CmaCh04G015870 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G015870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein LSM12 like
Location	Cma_Chr04 : 8033875 .. 8036827 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTGGACAGCGGCAATGGGGATGACTTCTCTGTTGGGTCATTCTTCTCAATCAAGACGACCTTAGGGGATGAATTTCAAGCACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAGCTTTTTGTGTTTATCAATCTGGTTTCTTGAATTCCTTAACTTCGTTTCTGTTCTCCTTGTCTTCGATTGATACAGGAAGGTTCGAAACCAGGACCTCGTAGGAACATAAGGCTGCTGAAAGCCAATTATATTAAAGAATTTTCGTTTTTGGGACATGGGGAAGATCCTCTTGATCTCAAAAACTGTTGCCTTGATCTCAATACTCTCCGTGCTAGAGAGGAACTCGCCATTAGGTACCTCAATAATCTGTTCTAAATTTTTGTGGGTTTTCGTTGCTTAATCGTGATTTTAGTTGTTTCTGTTCAATTACATGTTCTGTTTCTCCTTTGGTCGTACTGGGTTTTGCAGGCAAGCAGAAATAGAGGCGGAGAGAATAGGAGTGGGTGTGACCGGCGAGGCGCAAAGTATTTTTGACGCCTTGTCTAAAACGTAAGTTTAGTTGTACTCTGTTGGTAGGAATATTTGGAAAGTATATTTCGATTTATTTGAATCACGAAGATTTATTTTCTACTATTTTTAGTCCATGTCCACGCATTTATGTAACATGTGGCAATTTTATCAGTTTTCTTTGTCATGCAAAATTTTCCTATTGGTTTCACATAAAGAGAATCCATGAATGCGCTTATATGTTTCTTTATGTGTGTTGGGCTGGCAAACTTGTTTACGGGTCATTGCAAGCGGGCATTGGTTACAATGGAACGGAATCACTCCCTGCAGCTCTTCTCTTGAAGTTTTTTTTAAAAGCTTATGTTACAATGGAATGGAAAATATTTTGATTATTGTGATGAGTAATTGGATCATGGAACCAATATTTCTCATGAGTTTATGGCACTTTTATGGACGTTGTTAAGGTATTGATGATAACTAGGAAGTCTGATAATGGTCTGCTTGATGTTTTAATATCTTTGGCTAGTTATCATGTGAGATCCCACATGGTTTATAGAGAGGAACGAGTGCCAGCGAGGACGTTGGTCTCGAAGGGGTGGATTGTGAGATCCCATGTTGATTGGAGAGAGGAACGAGTGCCAGTGAGGATGCTGGGCTCTTAAGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGAGAACGAAACATTTTTTATAAGGATGTGGAAACCTCTTCCTAGCAGTTGCGTTTTAAAAACCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGGTTTGGGCTGTTACATATCACTTATCTTCAAAGGACCACGGTGCATTATTGTGCCATATATTTCCTATTGTGTTCACAATAGACAAGATGGAATTGATTCATTCTCTTAGGAGCATTGAAATATGAATATCGTTGTCCAAGTCGGTCGGCATAGTACTTTTTTCTCTCTGAACATTTGCCTCAGTGTTACTGGGGTAATGGAAAACAAAGAAATCATGTTATAACTCTTAAGAAGTCTTTGAATGATATAACATTAAGGCTTTACTTTTTTCCCTAAACTACGTATGGTAGTTCTTACATCTTTTGGTTCCTATGATATTGTTCTTGGTCCAAACTTTTTGAATGCCGTAATAGTTGTATACTAGCACCACTAGAGTAGTTTTACATATAATTGCTTTCCAACATTTATGGAACTTATTTACTTTTGTCATTCCCAATGCCAAAGTCATAGTTGGTATTATTGTGATGCAAGTTCCTTGATTTGAAGTTGGAATGACTATGCTAGTTTAAGTTCAATTAGGTATTTTAAAAACTTAATTTTTCAGCCCTGCCTGGTCTTTTTCTCCTGTTATGGAGTCTAAAAATTAGAGAATGGTTTGGGCACCTGGTGGGGTTGCAAACCCAAGTAAGCTCATCTGATGATCTAATTTTGTGAGGCATGTTCATACAGAATTTCAGATGCTACCGAAACGAATCGTGATAGGCTTTAATCTTAAACTTTCTATAGTATTGATCATTTTCTCTTGCTGTTTCAGCTGTATAATTTTTCTACTTCGTAGACTCTGCACTATTGTTTTGATATTCTGACTAAGGCGATCAGTGCAATCCTAGGCTTCCTGTTCGCTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTATCTACCAGAATCTGTTTCTGGAGGCACCCCTGCTGCCAATGAGCGGGTGAAGAAAGTGGTAAGCATCTATTAGTAATGTTCTTAACCATGAATATTACTAGCTTTTAACTTCTTTCCTTGCAATGCCTTGCACAAACCTCTTTACCTGTACATTCTTTTGTTCTCTTAAAGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGCGGAGGTGGTGGTCAGTGATGGTTATTCATCCTTATCCTTCTTTTCTGGGTGATAGGCGATTACCGGTACTGTACCGAGCCTTTTGCTAATGAGGGGAAGGTACAATCTCTTTTAGAGGCATCTCCATGTCAGCAATCATGAAGGGATTTAGTGTTTGAGTGGTACCTAATCTGTTGCCAAAGTTTTTATGTTTACTGGACTTCTGGTGGTCGATTTTTTCCTGTTTATGGACTGCACTGGACACACCCTGGCAAAGCTTTTTGGGTGTCCATGTTTAAGGTTTCCAAGATTTGCTCTGTTGCAATCTATCAAATTTGAAATGAGCAAAGTCAGATGTAATAACTGCCCACCTTTTATTCAACCATAATGTCTTACCTCTCAACTTTTTTGTGTTTACTATCAAACATCATGAACACGTGTTTGACGTAATTGATGCGCTGGGCGTCTAATCACCAGACATTGATATCGTTTGAGGCTTAAGATCATCTCTATATTTGTTATCTGCTCCTCTT

mRNA sequence

ATGGCACTGGACAGCGGCAATGGGGATGACTTCTCTGTTGGGTCATTCTTCTCAATCAAGACGACCTTAGGGGATGAATTTCAAGCACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAGCTTTTTGTGAAGGTTCGAAACCAGGACCTCGTAGGAACATAAGGCTGCTGAAAGCCAATTATATTAAAGAATTTTCGTTTTTGGGACATGGGGAAGATCCTCTTGATCTCAAAAACTGTTGCCTTGATCTCAATACTCTCCGTGCTAGAGAGGAACTCGCCATTAGGCAAGCAGAAATAGAGGCGGAGAGAATAGGAGTGGGTGTGACCGGCGAGGCGCAAAGTATTTTTGACGCCTTGTCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTATCTACCAGAATCTGTTTCTGGAGGCACCCCTGCTGCCAATGAGCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGCGGAGGTGGTGGTCAGTGATGGTTATTCATCCTTATCCTTCTTTTCTGGGTGATAGGCGATTACCGGTACTGTACCGAGCCTTTTGCTAATGAGGGGAAGGTACAATCTCTTTTAGAGGCATCTCCATGTCAGCAATCATGAAGGGATTTAGTGTTTGAGTGGTACCTAATCTGTTGCCAAAGTTTTTATGTTTACTGGACTTCTGGTGGTCGATTTTTTCCTGTTTATGGACTGCACTGGACACACCCTGGCAAAGCTTTTTGGGTGTCCATGTTTAAGGTTTCCAAGATTTGCTCTGTTGCAATCTATCAAATTTGAAATGAGCAAAGTCAGATGTAATAACTGCCCACCTTTTATTCAACCATAATGTCTTACCTCTCAACTTTTTTGTGTTTACTATCAAACATCATGAACACGTGTTTGACGTAATTGATGCGCTGGGCGTCTAATCACCAGACATTGATATCGTTTGAGGCTTAAGATCATCTCTATATTTGTTATCTGCTCCTCTT

Coding sequence (CDS)

ATGGCACTGGACAGCGGCAATGGGGATGACTTCTCTGTTGGGTCATTCTTCTCAATCAAGACGACCTTAGGGGATGAATTTCAAGCACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAGCTTTTTGTGAAGGTTCGAAACCAGGACCTCGTAGGAACATAAGGCTGCTGAAAGCCAATTATATTAAAGAATTTTCGTTTTTGGGACATGGGGAAGATCCTCTTGATCTCAAAAACTGTTGCCTTGATCTCAATACTCTCCGTGCTAGAGAGGAACTCGCCATTAGGCAAGCAGAAATAGAGGCGGAGAGAATAGGAGTGGGTGTGACCGGCGAGGCGCAAAGTATTTTTGACGCCTTGTCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTATCTACCAGAATCTGTTTCTGGAGGCACCCCTGCTGCCAATGAGCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGCGGAGGTGGTGGTCAGTGA

Protein sequence

MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGGGQ

Homology

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BLAST of CmaCh04G015870 vs. Swiss-Prot
Match: LS12A_DANRE (Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.4e-14
Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = 1


Query: 6   GNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPR-RNI 65
           G G+ FSVGS  S  T LG   Q +V+ FD PS +L L         C  S   P   ++
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLK--------CPSSSGKPNLSDV 64

Query: 66  RLLKANYIKEFSFLG-HGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEA 125
            L+   Y+ E   +    E P  L +  +     RAR E   + +  +A  I  GV+ E 
Sbjct: 65  ILINLAYVSEVDIINDRTETPPPLASLNISKLANRARTEKEDKLS--QAYAISAGVSIEG 124

Query: 126 QSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 177
           Q +F  + KT+   +W +  I+VM++V +S PY  E+  G   +A   ++K++E
Sbjct: 125 QQLFQTIHKTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVE 168

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BLAST of CmaCh04G015870 vs. Swiss-Prot
Match: LS12B_DANRE (Protein LSM12 homolog B OS=Danio rerio GN=lsm12b PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-13
Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 1


Query: 6   GNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPR-RNI 65
           G G+ FSVGS  S  T LG   Q +V+ FD PS +L L         C  S   P   ++
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLK--------CAPSSGKPNLSDV 64

Query: 66  RLLKANYIKEFSFL-GHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEA 125
            L+   Y+ E   +    E P  L +  L+ N L  R           A  +  GV+ E 
Sbjct: 65  MLVNLAYVSEVDIITDRAETPPPLAS--LNFNKLVNRARAEKEDKLSLAYAVSAGVSVEG 124

Query: 126 QSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 177
           Q +F  + KT+   +W +  I+VM++V +S PY  ++  G   +A   V+K++E
Sbjct: 125 QQLFQTIHKTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVE 168

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BLAST of CmaCh04G015870 vs. Swiss-Prot
Match: LSM12_CHICK (Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-12
Identity = 52/172 (30.23%), Postives = 82/172 (47.67%), Query Frame = 1


Query: 8   GDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPRR-NIRL 67
           G+ FSVGS  S +T      Q +V+ FD PS +L L         C  S   P   +I L
Sbjct: 5   GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALK--------CPSSSGKPNHADILL 64

Query: 68  LKANYIKEFSFLG-HGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEAQS 127
           +   Y+ E   +    E P  L +  L+++ L  +  +   +   +A  I  GV+ E Q 
Sbjct: 65  VNLQYVSEVEIINDRTETPPPLAS--LNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQ 124

Query: 128 IFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 177
           +F  + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 125 LFQTIHKTIKDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVE 166

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BLAST of CmaCh04G015870 vs. Swiss-Prot
Match: LSM12_XENLA (Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-12
Identity = 50/174 (28.74%), Postives = 84/174 (48.28%), Query Frame = 1


Query: 5   SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPRRNI 64
           +G G+ F++G++ S +T      Q +V+ FD PS +L L   S        S      +I
Sbjct: 2   AGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPS-------SSGKANHADI 61

Query: 65  RLLKANYIKEFSFLG-HGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEA 124
            LL  +Y+ +   +    + P  L +  L++  L +R  L   +   +A  I  GV+ + 
Sbjct: 62  LLLNLDYVSDVEVINERTQTPPPLAS--LNITKLASRARLEKEEKLSQAYAISAGVSLDG 121

Query: 125 QSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 177
           Q +F  + KT+   +W +  IVVM+EV +S PY  E+  G    A   V K++E
Sbjct: 122 QQLFQTIHKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVE 166

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BLAST of CmaCh04G015870 vs. Swiss-Prot
Match: LSM12_BOVIN (Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 51/172 (29.65%), Postives = 81/172 (47.09%), Query Frame = 1


Query: 8   GDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPRR-NIRL 67
           G+ FSVGS  S +T      Q +V+ FD  S +L L         C  S   P   +I L
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALK--------CPSSSGKPNHADILL 65

Query: 68  LKANYIKEFSFLG-HGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEAQS 127
           +   Y+ E   +    E P  L +  L+++ L ++      +   +A  I  GV+ E Q 
Sbjct: 66  INLQYVSEVEIINDRTETPPPLAS--LNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQ 125

Query: 128 IFDALSKTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 177
           +F  + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 LFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

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BLAST of CmaCh04G015870 vs. TrEMBL
Match: A0A0A0KQA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603270 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.3e-87
Identity = 173/189 (91.53%), Postives = 173/189 (91.53%), Query Frame = 1


Query: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPG 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVL          EGSKPG
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQ---------EGSKPG 60

Query: 61  PRRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGV 120
           PRRNIRLLKANYIKEFSFLGHGEDPLDLKNC LDLNTLRAREELAIRQAE EAERIGVGV
Sbjct: 61  PRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGV 120

Query: 121 TGEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELER 180
           T EAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ER
Sbjct: 121 TSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWER 180

Query: 181 KRLQVRGGG 189
           KRLQVRGGG
Sbjct: 181 KRLQVRGGG 180

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BLAST of CmaCh04G015870 vs. TrEMBL
Match: M5Y5P3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010406mg PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73
Identity = 145/188 (77.13%), Postives = 158/188 (84.04%), Query Frame = 1


Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGP 60
           MA+D  N ++ ++G F SIKTTL DEFQ QVITFDRPSNI+V+          EGSK G 
Sbjct: 71  MAMDGSNAEELAIGCFVSIKTTLSDEFQGQVITFDRPSNIVVIQ---------EGSKGGS 130

Query: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVT 120
           RRNIRLLKANYIKE S+LG  EDPLD+KNC LDLN+LRAREELAIRQAE E+ERIGVGVT
Sbjct: 131 RRNIRLLKANYIKELSYLGQAEDPLDVKNCYLDLNSLRAREELAIRQAEAESERIGVGVT 190

Query: 121 GEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERK 180
            +AQ+IFDALSKTLPVRWDKTVIVVMN VRVSSPY PESVSGGTPAANERVKKVLELERK
Sbjct: 191 SQAQNIFDALSKTLPVRWDKTVIVVMNAVRVSSPYTPESVSGGTPAANERVKKVLELERK 249

Query: 181 RLQVRGGG 189
           RLQ RG G
Sbjct: 251 RLQTRGSG 249

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BLAST of CmaCh04G015870 vs. TrEMBL
Match: A0A067JMS9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.6e-72
Identity = 143/182 (78.57%), Postives = 154/182 (84.62%), Query Frame = 1


Query: 5   SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPRRNI 64
           S N +DF+VG   SIKTTLG+EF+ QVITFDRPSNILVL          EGSK GPRRNI
Sbjct: 4   SNNSEDFAVGCLLSIKTTLGEEFEGQVITFDRPSNILVLQ---------EGSKTGPRRNI 63

Query: 65  RLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEAQ 124
           R LKANYIKEFSFLG  EDPLD+K C +DL++L+AREELA+RQAE EAERIGVGVT EAQ
Sbjct: 64  RFLKANYIKEFSFLGQAEDPLDVKKCYIDLHSLQAREELALRQAEAEAERIGVGVTAEAQ 123

Query: 125 SIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQV 184
           SIFDALSKTLPVRWDKTVIVVMNEVRV SPYLPE V GGTPAAN+RVKKVLE ERKRLQV
Sbjct: 124 SIFDALSKTLPVRWDKTVIVVMNEVRVGSPYLPECVIGGTPAANDRVKKVLEFERKRLQV 176

Query: 185 RG 187
           RG
Sbjct: 184 RG 176

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BLAST of CmaCh04G015870 vs. TrEMBL
Match: G7LFG2_MEDTR (Anticodon-binding domain protein OS=Medicago truncatula GN=MTR_8g063230 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.5e-70
Identity = 141/195 (72.31%), Postives = 160/195 (82.05%), Query Frame = 1


Query: 1   MALDSG-----NGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEG 60
           M ++SG     NGD+F+VG F SI+TTLGDEF+ QV+TFDR SN LVL          EG
Sbjct: 3   MTMESGSNNNNNGDEFAVGCFLSIRTTLGDEFEGQVVTFDRDSNYLVLQ---------EG 62

Query: 61  SKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERI 120
           SK GPRRNIRLLKA+YIK+F+FLG G+DPLD  +C LD+N L++REELAIRQAE +AERI
Sbjct: 63  SKHGPRRNIRLLKADYIKDFTFLGQGQDPLDPNHCLLDINALQSREELAIRQAEADAERI 122

Query: 121 GVGVTGEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVL 180
           GVGVT EAQ+IFDALSKTLPVRWDKTVIVVMNEVRVSSPY  E V GGTPAAN+RVKKVL
Sbjct: 123 GVGVTSEAQNIFDALSKTLPVRWDKTVIVVMNEVRVSSPYHSECVIGGTPAANDRVKKVL 182

Query: 181 ELERKRLQVRGGGGQ 191
           E ERKRLQ+RG GGQ
Sbjct: 183 EFERKRLQLRGSGGQ 188

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BLAST of CmaCh04G015870 vs. TrEMBL
Match: A0A068TVF6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032071001 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.4e-70
Identity = 140/184 (76.09%), Postives = 153/184 (83.15%), Query Frame = 1


Query: 7   NGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPG--PRRNI 66
           + +DF+VG   SIKT LG+EFQ QV+TFDR SNILVLHIL   L   EG   G  P+RNI
Sbjct: 6   SSEDFAVGCILSIKTNLGEEFQGQVLTFDRSSNILVLHIL--LLLIQEGLNSGSRPKRNI 65

Query: 67  RLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEAQ 126
           RLLKANYIKEF+FLG GEDPLDLK C +DLN L+ARE+ AIRQAE+EAER G+GVT EAQ
Sbjct: 66  RLLKANYIKEFTFLGQGEDPLDLKKCFIDLNNLQAREDSAIRQAELEAERFGIGVTAEAQ 125

Query: 127 SIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQV 186
           SIFDALSKTLPVRWDKT IVVMNEVRVSSPYLPESV GGTPAANERV+KVLE ERKRLQ 
Sbjct: 126 SIFDALSKTLPVRWDKTTIVVMNEVRVSSPYLPESVVGGTPAANERVRKVLEFERKRLQT 185

Query: 187 RGGG 189
           R  G
Sbjct: 186 RSAG 187

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BLAST of CmaCh04G015870 vs. TAIR10
Match: AT1G24050.1 (AT1G24050.1 RNA-processing, Lsm domain)

HSP 1 Score: 194.1 bits (492), Expect = 7.7e-50
Identity = 104/183 (56.83%), Postives = 131/183 (71.58%), Query Frame = 1


Query: 6   GNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGPR--RN 65
           G G+ F+VG+ +S+K   GDEF+  V+ +D   N         F+ F EG+KP P   +N
Sbjct: 14  GEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPN---------FVFFEEGTKPRPGHLKN 73

Query: 66  IRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEA 125
            R++ A++I   S+LG  EDPLD  N  +DLN LRA+E LAIRQAE +AER+GVGVT EA
Sbjct: 74  TRMVNASFITGLSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEA 133

Query: 126 QSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQ 185
           QSIFDALSKTLPV+W+ + I+VM EVRV SPYL + V GGT AAN RVKKVLELER+RLQ
Sbjct: 134 QSIFDALSKTLPVQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQ 187

Query: 186 VRG 187
           + G
Sbjct: 194 LFG 187

[Close]

BLAST of CmaCh04G015870 vs. TAIR10
Match: AT1G70220.1 (AT1G70220.1 RNA-processing, Lsm domain)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-27
Identity = 77/216 (35.65%), Postives = 109/216 (50.46%), Query Frame = 1


Query: 3   LDSGNGDD-FSVGSFFSIKTTLGDEFQAQVITFDRPSN---------------------- 62
           +DSG  D+ F VG  +++K T GD+F   V+ +D   N                      
Sbjct: 11  VDSGGEDEKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCY 70

Query: 63  ---------ILVLHILSGFLAFCEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLK 122
                    +     L G +   EG+KP P   +++R++  NYI E   LG  ++ L  K
Sbjct: 71  FAFLISSSCVCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AK 130

Query: 123 NCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEAQSIFDALSKTLPVRWDKTVIVVMNE 182
           N  ++L+ L  +E  AI   E    +IG GVT E Q IFDA+SKTLP+RW    ++VM +
Sbjct: 131 NTLVNLDGLIEKENHAISNVE----KIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGD 190

Query: 183 VRVSSPYLPESVSGGTPAANERVKKVLELERKRLQV 185
           V + SPY  + V GG    NERVK VL  ERK+LQ+
Sbjct: 191 VFIRSPYHSDCVYGGPRMVNERVKHVLGQERKKLQL 221

[Close]

BLAST of CmaCh04G015870 vs. NCBI nr
Match: gi|449434891|ref|XP_004135229.1| (PREDICTED: protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 3.3e-87
Identity = 173/189 (91.53%), Postives = 173/189 (91.53%), Query Frame = 1


Query: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPG 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVL          EGSKPG
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQ---------EGSKPG 60

Query: 61  PRRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGV 120
           PRRNIRLLKANYIKEFSFLGHGEDPLDLKNC LDLNTLRAREELAIRQAE EAERIGVGV
Sbjct: 61  PRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGV 120

Query: 121 TGEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELER 180
           T EAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ER
Sbjct: 121 TSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWER 180

Query: 181 KRLQVRGGG 189
           KRLQVRGGG
Sbjct: 181 KRLQVRGGG 180

[Close]

BLAST of CmaCh04G015870 vs. NCBI nr
Match: gi|659092318|ref|XP_008447009.1| (PREDICTED: uncharacterized protein LOC103489557 [Cucumis melo])

HSP 1 Score: 322.8 bits (826), Expect = 4.1e-85
Identity = 171/200 (85.50%), Postives = 175/200 (87.50%), Query Frame = 1


Query: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVL-------HIL-----S 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNIL          ++     S
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILTTLGDEFQGQVITFDRPS 60

Query: 61  GFLAFCEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQ 120
             L   EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNC LDLNTLRAREELAIRQ
Sbjct: 61  NILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQ 120

Query: 121 AEIEAERIGVGVTGEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAA 180
           AE EAERIGVGVT EAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAA
Sbjct: 121 AEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAA 180

Query: 181 NERVKKVLELERKRLQVRGG 188
           NERVKKVLELERKRLQVRGG
Sbjct: 181 NERVKKVLELERKRLQVRGG 200

[Close]

BLAST of CmaCh04G015870 vs. NCBI nr
Match: gi|720051218|ref|XP_010272019.1| (PREDICTED: protein LSM12 homolog A [Nelumbo nucifera])

HSP 1 Score: 285.4 bits (729), Expect = 7.2e-74
Identity = 145/186 (77.96%), Postives = 158/186 (84.95%), Query Frame = 1


Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGP 60
           MA D+ NGD+F+VG   +IKTTLG+EF+ Q+ITFDRPSNILVL          EGSK GP
Sbjct: 1   MATDTNNGDEFAVGCLLAIKTTLGEEFEGQIITFDRPSNILVLQ---------EGSKTGP 60

Query: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVT 120
           RRN+R LKANYIKEF+ LG  EDPLDLK C LDLN+L+AREE AIRQAEIEAERIGVGVT
Sbjct: 61  RRNVRFLKANYIKEFNLLGQAEDPLDLKKCYLDLNSLQAREESAIRQAEIEAERIGVGVT 120

Query: 121 GEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERK 180
            EAQSIFDALSKTLPV WDKT IVVMNEVRVSSPYLPE+V+GGTPAANERVKKVLELERK
Sbjct: 121 SEAQSIFDALSKTLPVHWDKTAIVVMNEVRVSSPYLPENVTGGTPAANERVKKVLELERK 177

Query: 181 RLQVRG 187
           RLQ RG
Sbjct: 181 RLQSRG 177

[Close]

BLAST of CmaCh04G015870 vs. NCBI nr
Match: gi|658009561|ref|XP_008339997.1| (PREDICTED: uncharacterized protein LOC103402983 [Malus domestica])

HSP 1 Score: 285.4 bits (729), Expect = 7.2e-74
Identity = 145/188 (77.13%), Postives = 159/188 (84.57%), Query Frame = 1


Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGP 60
           MA+D  N ++F++GSF  IKTTL DEFQ QVITFDRPSNI+V+          EGSK G 
Sbjct: 1   MAMDGSNTEEFAIGSFVKIKTTLSDEFQGQVITFDRPSNIVVIQ---------EGSKGGA 60

Query: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVT 120
           RRNIRLLKANYIKE S+ G  EDPLD+K C LDLN+LRAREELAIRQAE E+ERIGVGVT
Sbjct: 61  RRNIRLLKANYIKELSYSGQAEDPLDIKKCYLDLNSLRAREELAIRQAEAESERIGVGVT 120

Query: 121 GEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERK 180
            +AQ+IFDALSKTLPVRWDKTVIVVMNEVRVSSPY PESVSGGTPAANERVKKVLELER+
Sbjct: 121 AQAQNIFDALSKTLPVRWDKTVIVVMNEVRVSSPYTPESVSGGTPAANERVKKVLELERR 179

Query: 181 RLQVRGGG 189
           RLQ RGGG
Sbjct: 181 RLQTRGGG 179

[Close]

BLAST of CmaCh04G015870 vs. NCBI nr
Match: gi|596288960|ref|XP_007226021.1| (hypothetical protein PRUPE_ppa010406mg [Prunus persica])

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73
Identity = 145/188 (77.13%), Postives = 158/188 (84.04%), Query Frame = 1


Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCEGSKPGP 60
           MA+D  N ++ ++G F SIKTTL DEFQ QVITFDRPSNI+V+          EGSK G 
Sbjct: 71  MAMDGSNAEELAIGCFVSIKTTLSDEFQGQVITFDRPSNIVVIQ---------EGSKGGS 130

Query: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVT 120
           RRNIRLLKANYIKE S+LG  EDPLD+KNC LDLN+LRAREELAIRQAE E+ERIGVGVT
Sbjct: 131 RRNIRLLKANYIKELSYLGQAEDPLDVKNCYLDLNSLRAREELAIRQAEAESERIGVGVT 190

Query: 121 GEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERK 180
            +AQ+IFDALSKTLPVRWDKTVIVVMN VRVSSPY PESVSGGTPAANERVKKVLELERK
Sbjct: 191 SQAQNIFDALSKTLPVRWDKTVIVVMNAVRVSSPYTPESVSGGTPAANERVKKVLELERK 249

Query: 181 RLQVRGGG 189
           RLQ RG G
Sbjct: 251 RLQTRGSG 249

The following BLAST results are available for this feature:

BLAST of CmaCh04G015870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LS12A_DANRE	8.4e-14	31.03	Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1	[more]
LS12B_DANRE	9.3e-13	30.46	Protein LSM12 homolog B OS=Danio rerio GN=lsm12b PE=2 SV=1	[more]
LSM12_CHICK	3.5e-12	30.23	Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1	[more]
LSM12_XENLA	7.8e-12	28.74	Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1	[more]
LSM12_BOVIN	1.3e-11	29.65	Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2	[more]

BLAST of CmaCh04G015870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQA9_CUCSA	2.3e-87	91.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603270 PE=4 SV=1	[more]
M5Y5P3_PRUPE	1.1e-73	77.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010406mg PE=4 SV=1	[more]
A0A067JMS9_JATCU	3.6e-72	78.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1	[more]
G7LFG2_MEDTR	1.5e-70	72.31	Anticodon-binding domain protein OS=Medicago truncatula GN=MTR_8g063230 PE=2 SV=...	[more]
A0A068TVF6_COFCA	4.4e-70	76.09	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032071001 PE=4 SV=1	[more]

BLAST of CmaCh04G015870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24050.1	7.7e-50	56.83	RNA-processing, Lsm domain	[more]
AT1G70220.1	3.1e-27	35.65	RNA-processing, Lsm domain	[more]

BLAST of CmaCh04G015870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434891\|ref\|XP_004135229.1\|	3.3e-87	91.53	PREDICTED: protein LSM12 homolog A [Cucumis sativus]	[more]
gi\|659092318\|ref\|XP_008447009.1\|	4.1e-85	85.50	PREDICTED: uncharacterized protein LOC103489557 [Cucumis melo]	[more]
gi\|720051218\|ref\|XP_010272019.1\|	7.2e-74	77.96	PREDICTED: protein LSM12 homolog A [Nelumbo nucifera]	[more]
gi\|658009561\|ref\|XP_008339997.1\|	7.2e-74	77.13	PREDICTED: uncharacterized protein LOC103402983 [Malus domestica]	[more]
gi\|596288960\|ref\|XP_007226021.1\|	1.6e-73	77.13	hypothetical protein PRUPE_ppa010406mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019181	Anticodon-binding_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005215	transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G015870.1	CmaCh04G015870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 92..174 score: 3.2
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 88..174 score: 3.0
None	No IPR available	PANTHER	PTHR13542	UNCHARACTERIZED	coord: 1..185 score: 5.5
None	No IPR available	PANTHER	PTHR13542:SF0	PROTEIN LSM12 HOMOLOG	coord: 1..185 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G015870	Cucsa.285820	Cucumber (Gy14) v1	cgycmaB0804
CmaCh04G015870	Cla010110	Watermelon (97103) v1	cmawmB702
CmaCh04G015870	Csa5G603270	Cucumber (Chinese Long) v2	cmacuB724
CmaCh04G015870	MELO3C012019	Melon (DHL92) v3.5.1	cmameB653
CmaCh04G015870	ClCG05G025100	Watermelon (Charleston Gray)	cmawcgB658
CmaCh04G015870	CSPI05G22920	Wild cucumber (PI 183967)	cmacpiB731
CmaCh04G015870	CmoCh04G016590	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G015870	CmoCh04G003080	Cucurbita moschata (Rifu)	cmacmoB732
CmaCh04G015870	Lsi04G005200	Bottle gourd (USVL1VR-Ls)	cmalsiB678
CmaCh04G015870	Cp4.1LG01g13100	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G015870	Cp4.1LG01g04180	Cucurbita pepo (Zucchini)	cmacpeB724
CmaCh04G015870	MELO3C012019.2	Melon (DHL92) v3.6.1	cmamedB740
CmaCh04G015870	CsaV3_5G031800	Cucumber (Chinese Long) v3	cmacucB0861
CmaCh04G015870	Cla97C05G107210	Watermelon (97103) v2	cmawmbB762
CmaCh04G015870	Bhi07G001368	Wax gourd	cmawgoB0896
CmaCh04G015870	Carg01767	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G015870	CmaCh04G002950	Cucurbita maxima (Rimu)	cmacmaB532

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G015870	Cucumber (Gy14) v2	cgybcmaB648