Cp4.1LG01g10420 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAAAATTAAGAACTTCAACTAAACTACGATTTTTTATTAGTTTTTGTTAAAATGTTAAGTGAATACAAAAGCGATTACCCGCCCGAGACCTGAGAAGCCCAAAAAAGATGGTGAGAATTCACGTCAAACCTGGCGACGATTCCGGCGGCAACGAGTTTCTCTATGACTGTCAGACCAACTTGTTGATCGAAGAAGTTACTTCGGAAGTCGTTCAAATTTTCAATCTCCAATCTAAAATCCATCGGCTTGTTTCAGAACTCCAACCCCGTCTACTTCCCCTTTATGGCGATCCCAAAGGTTTGGAAATTAGCAATTCGAACAAATAATTTCTCTTTTTCCTGATTATGTTTCTTTCTCCTTTGTAATCATCTTATGATGGCTGTGATGTGAAGCTACGCCTCTTTTGAGAGCTTTATCAGAAGCAAAGTCGTACGCGTCTAAGGTTTCTTTCTATTCCCTTCTTGTTTGGATGATGAGAAAATCGTAGAAAGTTCTGTTGTTTAGTTAACCTAGATTGTGGAGCAGAATAAATGCAAAATCATCGCGATTCCAAATTGTTTTTTCTTGTTGGATTTTGTGATTGACGTCCAGGCATTCCATTTGAAATCAAAACTATTTTAGGTTTGAGTATTTTTTTTCTTCAGAAAAATGGAATGCTGTGCCTTGTAGCCTATTCTTTTGCATCTTTTAATGAATTGATTTGTTTTTTTTTAAATCTTTCCTCATTTGAAATCAGAACTGTTTGAGCTTTGAGAGAGAACTGTTCTCTATCTTTTTTTGCATCTTCTCATTAATTGATTTTCCCTTATTCGAAATCAGAACTGTTGCTATAGCTTTGAGAGTAGAATTTTCTTCTCTAGAGAAGGGAATATTGTAACTATTAGTCTACTGTTTTGCATCTTCTCATTGATTGATATCTATTTTCTCATTACAGGACATGGTTATCCACAATAGACCTTTATCATATCTTGTGTTGAGACACCATTTTGAAACTATTGAAAGGGAATTGGCTGCAAAGTTTGATTTATTGGGTGTTTCTGGTTCCACTCACTATCAACAACTTTTATCTGGTATTTTCATTTTTCTCCCTTTGCTTTTTAGTTCTTTACCTTTTATATTGTAACACATAGTGGTTCTGTTTTGGTTCCTATCAGTTCTATATTATTCGAGTTTCTGAACCTTAATCAAGCTCCCTTGTCAAGTTTGTTTGGTGTTCAAACTGACAAACTTTATCTCAACTGCAAATATGTGTGCTCAATCCAACATGTATCTTTTTTCTTTTTGTCAAATTGTTAGTTTAGTCCTTTAGCACAAAATTGCAACTGACTCAAAAAACAAGAGCCCATAGCATGCTTTCCCCATATTTTACTTGCAGTGCCCTTGAGATATGAACTTCTGTGCAATGTTAACATGAAGAATCTCTGGTTCATATCAATTCCCCAGGGGAACAATATTAAATTTCAAGGAAAATTATGTCGAAAGAAGTTTCTAGGGGTAGCTCTCTCTTGAGAATACATTTTCCAATGCTCTTGATAGAACTCGGATATATTGAAATATAAAAGATTACTGAATTACAATTGAACTCCTGGGTAGTATTAGGGGTACTTGGAACCTCCCCTCTCTTGAGATGCCACTCAAGCCTAAAGCCAGTGAACAATTGTGTACCTTCATTCCTTCCCTTTCACTCTATTTGTAACAAAACAACTCCTCCTCAGCTAAAATATTAATATACCCACAATACCTCATAATATTCCCACTTATGTCTGATACTTGGTGAAAGAGATCCATTCACACATCATGTTCACTAATTTTTTTTAACTGTTGCTCAGAAAATAAATTGCTTTGTTTTAGTCAACCTTATAATTCTCAATGAAAGTGACTAGAAACGAGATTGTCTATTATCTCATCTTTCAGATGTGGGACTTCTTAATGAGGATACGACTCAGCTAAAATTAGCAGGAAAAGAGCTTATGAGGGAGAAACAACTCAGTGATTACGCTGGAAGAAATGAGAAAACTAAGGTATTTCTACATTTAGACTGTTCAATCAATTCGTTTTCTTCATATAGAGGATTAATCACTCCAATTTACTATCAGATCGTTCTCAAACTACAACCAAAAATCATGCCCCCGAGTTGAATACTGGTACTTCGAAGATGGACATACGAGAGCACTGTGCTTGAAGGCGTTCTAATAAAACCAGAGTACCTCTCTGCATCCCCCACATGGTGTAGTCTAAATCTCTGCTTGTTAGATGGAACTAAGATTTTGGATGTGATGAAGTAAAAAGATCTAAATATTTTTGCTTTCTAGTTCTGCAACTCTTTGTTGGCTCATGTATTGTGTCATAAATCAGATGGATTTTGGATCCCTTTTATCATTGAGTAATCGCTGCTCTGATGAATTTATTATGTAAGATCCTAAGATG TTAAAATTAAGAACTTCAACTAAACTACGATTTTTTATTAGTTTTTGTTAAAATGTTAAGTGAATACAAAAGCGATTACCCGCCCGAGACCTGAGAAGCCCAAAAAAGATGGTGAGAATTCACGTCAAACCTGGCGACGATTCCGGCGGCAACGAGTTTCTCTATGACTGTCAGACCAACTTGTTGATCGAAGAAGTTACTTCGGAAGTCGTTCAAATTTTCAATCTCCAATCTAAAATCCATCGGCTTGTTTCAGAACTCCAACCCCGTCTACTTCCCCTTTATGGCGATCCCAAAGCTACGCCTCTTTTGAGAGCTTTATCAGAAGCAAAGTCGTACGCGTCTAAGGACATGGTTATCCACAATAGACCTTTATCATATCTTGTGTTGAGACACCATTTTGAAACTATTGAAAGGGAATTGGCTGCAAAGTTTGATTTATTGGGTGTTTCTGGTTCCACTCACTATCAACAACTTTTATCTGATGTGGGACTTCTTAATGAGGATACGACTCAGCTAAAATTAGCAGGAAAAGAGCTTATGAGGGAGAAACAACTCAGTGATTACGCTGGAAGAAATGAGAAAACTAAGATCGTTCTCAAACTACAACCAAAAATCATGCCCCCGAGTTGAATACTGGTACTTCGAAGATGGACATACGAGAGCACTGTGCTTGAAGGCGTTCTAATAAAACCAGAGTACCTCTCTGCATCCCCCACATGGTGTAGTCTAAATCTCTGCTTGTTAGATGGAACTAAGATTTTGGATGTGATGAAGTAAAAAGATCTAAATATTTTTGCTTTCTAGTTCTGCAACTCTTTGTTGGCTCATGTATTGTGTCATAAATCAGATGGATTTTGGATCCCTTTTATCATTGAGTAATCGCTGCTCTGATGAATTTATTATGTAAGATCCTAAGATG ATGGTGAGAATTCACGTCAAACCTGGCGACGATTCCGGCGGCAACGAGTTTCTCTATGACTGTCAGACCAACTTGTTGATCGAAGAAGTTACTTCGGAAGTCGTTCAAATTTTCAATCTCCAATCTAAAATCCATCGGCTTGTTTCAGAACTCCAACCCCGTCTACTTCCCCTTTATGGCGATCCCAAAGCTACGCCTCTTTTGAGAGCTTTATCAGAAGCAAAGTCGTACGCGTCTAAGGACATGGTTATCCACAATAGACCTTTATCATATCTTGTGTTGAGACACCATTTTGAAACTATTGAAAGGGAATTGGCTGCAAAGTTTGATTTATTGGGTGTTTCTGGTTCCACTCACTATCAACAACTTTTATCTGATGTGGGACTTCTTAATGAGGATACGACTCAGCTAAAATTAGCAGGAAAAGAGCTTATGAGGGAGAAACAACTCAGTGATTACGCTGGAAGAAATGAGAAAACTAAGATCGTTCTCAAACTACAACCAAAAATCATGCCCCCGAGTTGA MVRIHVKPGDDSGGNEFLYDCQTNLLIEEVTSEVVQIFNLQSKIHRLVSELQPRLLPLYGDPKATPLLRALSEAKSYASKDMVIHNRPLSYLVLRHHFETIERELAAKFDLLGVSGSTHYQQLLSDVGLLNEDTTQLKLAGKELMREKQLSDYAGRNEKTKIVLKLQPKIMPPS
BLAST of Cp4.1LG01g10420 vs. TrEMBL
Match: A0A0A0KS44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177690 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 3.3e-72 Identity = 140/174 (80.46%), Postives = 154/174 (88.51%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. TrEMBL
Match: M1C5V7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023509 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 9.3e-43 Identity = 96/176 (54.55%), Postives = 121/176 (68.75%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. TrEMBL
Match: K4C2G1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 3.9e-41 Identity = 95/175 (54.29%), Postives = 122/175 (69.71%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. TrEMBL
Match: A0A0V0HLT5_SOLCH (Putative UPF0769 protein C21orf59-like (Fragment) OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 7.4e-40 Identity = 91/174 (52.30%), Postives = 116/174 (66.67%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. TrEMBL
Match: B9SLC4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0626460 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 6.3e-39 Identity = 86/168 (51.19%), Postives = 116/168 (69.05%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. NCBI nr
Match: gi|449451677|ref|XP_004143588.1| (PREDICTED: UPF0769 protein C21orf59 homolog [Cucumis sativus]) HSP 1 Score: 279.3 bits (713), Expect = 4.7e-72 Identity = 140/174 (80.46%), Postives = 154/174 (88.51%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. NCBI nr
Match: gi|659123336|ref|XP_008461611.1| (PREDICTED: UPF0769 protein C21orf59 homolog [Cucumis melo]) HSP 1 Score: 275.0 bits (702), Expect = 8.9e-71 Identity = 136/172 (79.07%), Postives = 151/172 (87.79%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. NCBI nr
Match: gi|971547952|ref|XP_006345919.2| (PREDICTED: UPF0769 protein C21orf59 homolog isoform X2 [Solanum tuberosum]) HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42 Identity = 96/176 (54.55%), Postives = 121/176 (68.75%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. NCBI nr
Match: gi|698537518|ref|XP_009764848.1| (PREDICTED: UPF0769 protein C21orf59 homolog [Nicotiana sylvestris]) HSP 1 Score: 179.1 bits (453), Expect = 6.7e-42 Identity = 94/174 (54.02%), Postives = 119/174 (68.39%), Query Frame = 1
BLAST of Cp4.1LG01g10420 vs. NCBI nr
Match: gi|970027285|ref|XP_015074947.1| (PREDICTED: UPF0769 protein C21orf59 homolog isoform X2 [Solanum pennellii]) HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41 Identity = 96/175 (54.86%), Postives = 123/175 (70.29%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |