Cla020104 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020104
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 23707812 .. 23708027 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAATTCACGTCAAGTCCGGCGACGATTCCGGCCAGAACGAGTTTCTATTTGAGTGTCCGAGCGACTCATTGATCGAAGAAATTGCTTCGGAAGTTATTCAAATTTTCAATCTCCAATCTAAAATCCATCGGCTTGTTTCAGTGTTCGAACCCCGTCTACTTCCCTTCCATGGCGATCCCAAAGGTTTGAATATTAGCAATTTCGAATAA

mRNA sequence

ATGGTGAGAATTCACGTCAAGTCCGGCGACGATTCCGGCCAGAACGAGTTTCTATTTGAGTGTCCGAGCGACTCATTGATCGAAGAAATTGCTTCGGAAGTTATTCAAATTTTCAATCTCCAATCTAAAATCCATCGGCTTGTTTCAGTGTTCGAACCCCGTCTACTTCCCTTCCATGGCGATCCCAAAGGTTTGAATATTAGCAATTTCGAATAA

Coding sequence (CDS)

ATGGTGAGAATTCACGTCAAGTCCGGCGACGATTCCGGCCAGAACGAGTTTCTATTTGAGTGTCCGAGCGACTCATTGATCGAAGAAATTGCTTCGGAAGTTATTCAAATTTTCAATCTCCAATCTAAAATCCATCGGCTTGTTTCAGTGTTCGAACCCCGTCTACTTCCCTTCCATGGCGATCCCAAAGGTTTGAATATTAGCAATTTCGAATAA

Protein sequence

MVRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHGDPKGLNISNFE

Homology

[Close]

BLAST of Cla020104 vs. TrEMBL
Match: A0A0A0KS44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177690 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-19
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MVRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHG 60
          MVR+HVKSG DS + EFL+EC SD LI+EIASEVIQIFNLQSKIHRL+S FEP LLPF G
Sbjct: 1  MVRVHVKSGHDSCEFEFLYECQSDLLIDEIASEVIQIFNLQSKIHRLISEFEPLLLPFSG 60

Query: 61 DPKGLNI 68
          DPK  ++
Sbjct: 61 DPKATSL 67

[Close]

BLAST of Cla020104 vs. TrEMBL
Match: K4C2G1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-07
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 1  MVRIHVKSGDDS-GQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFH 60
          MVRIHVK G  S G  EFL++  + S I+EIA ++I+I NLQSKI      FE  L    
Sbjct: 1  MVRIHVKHGGGSDGDGEFLYDTETSSTIDEIAKDIIEIANLQSKIQCFAVEFESHLSKLQ 60

Query: 61 GDPKGLNI 68
          GDPK +++
Sbjct: 61 GDPKVMSL 68

[Close]

BLAST of Cla020104 vs. TrEMBL
Match: B9SLC4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0626460 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-06
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1  MVRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHG 60
          MVRI VK GD     EFL+EC +   I+EIA E+IQI NLQ KI  L+   EP L PF  
Sbjct: 1  MVRIQVKHGD----REFLYECQNTCQIDEIAPELIQISNLQYKIDHLLLRLEPLLSPFLK 59

Query: 61 DPK 64
          +PK
Sbjct: 61 NPK 59

[Close]

BLAST of Cla020104 vs. TrEMBL
Match: M1C5V7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023509 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-06
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 1  MVRIHVKSGD--DSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPF 60
          MVR+HVK GD    G  EFL++  + S I+EIA E+I+I N QSKI       E  L   
Sbjct: 29 MVRVHVKHGDGGSDGAGEFLYDTETTSTIDEIAKEIIEIANFQSKIQCFAVELESHLSKL 88

Query: 61 HGDPK 64
           GDPK
Sbjct: 89 QGDPK 93

[Close]

BLAST of Cla020104 vs. TrEMBL
Match: A0A0V0HLT5_SOLCH (Putative UPF0769 protein C21orf59-like (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-06
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 1


Query: 3  RIHVK--SGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHG 62
          R+HVK  +G   G  EFL++  + S I+EIA ++I+I N QSKI      FEP L    G
Sbjct: 1  RVHVKHGAGGSDGAGEFLYDTETTSKIDEIAKDIIEIANFQSKIQCFAVEFEPHLSKLQG 60

Query: 63 DPKGL 66
          DPK +
Sbjct: 61 DPKAM 65

[Close]

BLAST of Cla020104 vs. NCBI nr
Match: gi|659123336|ref|XP_008461611.1| (PREDICTED: UPF0769 protein C21orf59 homolog [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 5.3e-22
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 2  VRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHGD 61
          +R+HVKSGDDS QNEFL+EC SDSLIEEIASEVIQIFNLQSKIHRL+S FEPRLLPF GD
Sbjct: 1  MRLHVKSGDDSCQNEFLYECHSDSLIEEIASEVIQIFNLQSKIHRLISEFEPRLLPFSGD 60

Query: 62 PK 64
          PK
Sbjct: 61 PK 62

[Close]

BLAST of Cla020104 vs. NCBI nr
Match: gi|449451677|ref|XP_004143588.1| (PREDICTED: UPF0769 protein C21orf59 homolog [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MVRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHG 60
          MVR+HVKSG DS + EFL+EC SD LI+EIASEVIQIFNLQSKIHRL+S FEP LLPF G
Sbjct: 1  MVRVHVKSGHDSCEFEFLYECQSDLLIDEIASEVIQIFNLQSKIHRLISEFEPLLLPFSG 60

Query: 61 DPKGLNI 68
          DPK  ++
Sbjct: 61 DPKATSL 67

[Close]

BLAST of Cla020104 vs. NCBI nr
Match: gi|645255516|ref|XP_008233534.1| (PREDICTED: UPF0769 protein C21orf59 homolog [Prunus mume])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 1  MVRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHG 60
          MVRIHVK GD S Q EFL++C + S IEEIA E+ +I NLQS+I RLV   EP L P  G
Sbjct: 1  MVRIHVKHGDGSDQKEFLYDCSTTSPIEEIAPEISRISNLQSRIDRLVFELEPHLEPLQG 60

Query: 61 DPKGLNI 68
          D K +++
Sbjct: 61 DAKAVSL 67

[Close]

BLAST of Cla020104 vs. NCBI nr
Match: gi|658037093|ref|XP_008354107.1| (PREDICTED: UPF0769 protein C21orf59-like [Malus domestica])

HSP 1 Score: 74.7 bits (182), Expect = 7.2e-11
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 1  MVRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHG 60
          MVRIHVK G+ S Q EFL++C S S I+EIA+E+ +I NLQ+KI RL+   EPRL   HG
Sbjct: 1  MVRIHVKHGEGSEQKEFLYDCASTSPIDEIATEISRISNLQTKIDRLILELEPRLELLHG 60

Query: 61 DPKGLNI 68
          D K  ++
Sbjct: 61 DAKAASL 67

[Close]

BLAST of Cla020104 vs. NCBI nr
Match: gi|658016378|ref|XP_008343530.1| (PREDICTED: uncharacterized protein LOC103406311 [Malus domestica])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 1  MVRIHVKSGDDSGQNEFLFECPSDSLIEEIASEVIQIFNLQSKIHRLVSVFEPRLLPFHG 60
          MVRIHVK G+ S Q EFL++C S S I+EIA E+ +I NLQ+KI RL+   EPRL   HG
Sbjct: 1  MVRIHVKHGEGSEQKEFLYDCASTSPIDEIAPEISRISNLQTKIDRLILELEPRLDLLHG 60

Query: 61 DPKGLNI 68
          D K  ++
Sbjct: 61 DAKAASL 67

The following BLAST results are available for this feature:

BLAST of Cla020104 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS44_CUCSA	1.7e-19	74.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177690 PE=4 SV=1	[more]
K4C2G1_SOLLC	4.4e-07	48.53	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9SLC4_RICCO	3.7e-06	53.97	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0626460 PE=4 SV=1	[more]
M1C5V7_SOLTU	4.9e-06	47.69	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023509 PE=4 SV=1	[more]
A0A0V0HLT5_SOLCH	8.3e-06	44.62	Putative UPF0769 protein C21orf59-like (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Cla020104 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123336\|ref\|XP_008461611.1\|	5.3e-22	87.10	PREDICTED: UPF0769 protein C21orf59 homolog [Cucumis melo]	[more]
gi\|449451677\|ref\|XP_004143588.1\|	2.5e-19	74.63	PREDICTED: UPF0769 protein C21orf59 homolog [Cucumis sativus]	[more]
gi\|645255516\|ref\|XP_008233534.1\|	3.2e-11	56.72	PREDICTED: UPF0769 protein C21orf59 homolog [Prunus mume]	[more]
gi\|658037093\|ref\|XP_008354107.1\|	7.2e-11	55.22	PREDICTED: UPF0769 protein C21orf59-like [Malus domestica]	[more]
gi\|658016378\|ref\|XP_008343530.1\|	1.6e-10	55.22	PREDICTED: uncharacterized protein LOC103406311 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048858	cell projection morphogenesis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17174	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU48118	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020104	Cla020104.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU48118	WMU48118	transcribed_cluster
WMU17174	WMU17174	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13238	PROTEIN C21ORF59	coord: 2..52 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020104	Cla97C02G039230	Watermelon (97103) v2	wmwmbB316
Cla020104	Csa5G177690	Cucumber (Chinese Long) v2	cuwmB428
Cla020104	MELO3C023815	Melon (DHL92) v3.5.1	mewmB071
Cla020104	ClCG02G013580	Watermelon (Charleston Gray)	wcgwmB197
Cla020104	CSPI05G09180	Wild cucumber (PI 183967)	cpiwmB440
Cla020104	Cucsa.165720	Cucumber (Gy14) v1	cgywmB310
Cla020104	CmaCh04G012190	Cucurbita maxima (Rimu)	cmawmB723
Cla020104	CmoCh04G012920	Cucurbita moschata (Rifu)	cmowmB719
Cla020104	Lsi04G008430	Bottle gourd (USVL1VR-Ls)	lsiwmB331
Cla020104	Cp4.1LG01g10420	Cucurbita pepo (Zucchini)	cpewmB451
Cla020104	CsGy5G006520	Cucumber (Gy14) v2	cgybwmB401
Cla020104	MELO3C023815.2	Melon (DHL92) v3.6.1	medwmB070
Cla020104	Carg26898	Silver-seed gourd	carwmB0741
Cla020104	CsaV3_5G006590	Cucumber (Chinese Long) v3	cucwmB454

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020104	Cucumber (Chinese Long) v3	cucwmB278
Cla020104	Cucumber (Chinese Long) v3	cucwmB366
Cla020104	Watermelon (97103) v2	wmwmbB313
Cla020104	Watermelon (97103) v2	wmwmbB342
Cla020104	Wax gourd	wgowmB053
Cla020104	Wax gourd	wgowmB458
Cla020104	Wax gourd	wgowmB561
Cla020104	Watermelon (97103) v1	wmwmB053
Cla020104	Watermelon (97103) v1	wmwmB154
Cla020104	Cucumber (Gy14) v1	cgywmB556
Cla020104	Cucurbita maxima (Rimu)	cmawmB724
Cla020104	Cucurbita moschata (Rifu)	cmowmB720
Cla020104	Melon (DHL92) v3.5.1	mewmB383
Cla020104	Watermelon (Charleston Gray)	wcgwmB078
Cla020104	Cucumber (Chinese Long) v2	cuwmB268
Cla020104	Cucurbita pepo (Zucchini)	cpewmB452
Cla020104	Bottle gourd (USVL1VR-Ls)	lsiwmB273
Cla020104	Cucumber (Gy14) v2	cgybwmB252
Cla020104	Melon (DHL92) v3.6.1	medwmB376
Cla020104	Silver-seed gourd	carwmB0864