Cp4.1LG01g09910 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g09910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMediator of RNA polymerase II transcription subunit 15-like protein
LocationCp4.1LG01 : 7001663 .. 7006622 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCGTTAGAAAGTGAAAAGTGTGACAGACGTTTGGATTTTGTACGGGTTGTTGTAATGGCGCGGATGTGAGCTGTATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCACTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTATTTGTTTAATCGGTTTTTGTTGCGTTTTTTTTTGTTCTTTTTGCCTCAGTATCATCTCTCTGTCAATATCTCTGTAACGCCGGCGCTTGTCTCCGTTTTTTGTGGCATGTGAGTTGGATGATGGTTTTTTACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTCTTACTTGTGATGGTGTGATGGTGAGTGAAAGTTACCCTACAGTGAAGTTGTGGAACTTCGATTGAATCACATTTTTTAGCTATGTCTTTATGATTGATTGTGTTGCATGTTCAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACAGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGGTAAGGAATTGAGTACCGATTTCTGTTCCTTCAAAACAGTAAAATGAAATTGGATGGCTGTTGAAGTTTCTTTACATGAATGCCTCACTTAGTTATAACTCGATGAAGGCAATTGCTTAAGCCGGGTTTGATTATTATTTTTGTTCTTGGTTTTCTGTTTTCGAAATTAAGCCTATAAAGACTACTTACACTCATAGTTTTGTTACTTTTATCACCTACTTTCTGAAAACGTTTTAAAAACTAAGTCAATTTTTGAAAAATAATCAAAGTAGTTCTTAAATTTTGGCTTTGTTTTGAAATTTGATTTAGAATTCGAATGTGTTTAAAACAAAATGGTCATCGAATGGGGTATTAGTAGTAAAAGTTTTAGGTATCGAGAAATTTCAACTATATACTGTATTCATTCTTTGATCTGCTCAATTAAGTTTGTTCGCTGTGGAAAATTTTTGGAGAAATTGTTTTGAGTACGATGTCTTAGAAATGTTCCTTGTTCAGTAACTACTGGTTGTGACGTTTCTTGGTGGGTTATTGCAAAGAACAAGTTAACCAAGTCGAGGATTTCCAATTATTTTCTTGTATTATCCTGTTTACATTCTCAGCAACTTTTTTTCCTACTAAAGATATGTTTGGGAGTGGTTAAAAGTACTTTTGTCATTTTCATTTCAAAGCATGCCTTAAATTATCACTCCATAATTGTTTTTAAATGATTAAATGTATGTTTTGAAGTGATTTAGAAATGACATAAGTGATTTTAATCCTTTCTAAATCTCTCCCAAAAATGCCCTAAAGTTTTGCCATTGCTTTTGTTAGTTGACTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTTCGTTGGAAAAGGTTTTTCAGTTTCATTTCTCTTAAGAACAAATTTTTATGTACATCATAGAAATGCTGTTCTTGGCTCAATCTCAGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTACCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTAATGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAACTGAGGTGAGTGGCCATATATTTGCTTCTTTTTTTGTCCCGTTAAATTTTTTTGTGGAGAATCGAATCATCAACCCTTGGGATGGTAATTGGTGTTTCATTCACTGAGTTATGTTGGATTAACGACTATCTATTTGGTTTATATCTATGATTTGAACTTGAAAGATAAAATTGCATGAGGGAACCAATAAGTGCTTTTCGCAAATGTGATCATGAACTGCCAATTAGTAATAACTGTGAGCTTAATTTTGATAAATTTTGTAAATATTCTATTTGATTAATTTGAAAAAATAAAGTGTGAAGCACTTTACTCATGAATGTGAAATTAACTTTACACCTCAAAAGTGATTAACAAGATCCATCGATGATAGTTTTGACCCGATCCTTTATTTTATTTGATACATCTTGACTGATGCATAGAATCGATATATGAAGGATAAAATGTATGAGAAATTATAATGTCTAAATTATATATACCATATTCTTTCAAAAGTTGCAATATTACTCTTGACCTTTCATTAACATTTCGAAACTATCCTTACTTAGAAATACTTTGGAATTTCGAATGGAAATGGGGGCTAAGAAAGGTGTGGCAATGACCTAGAACAATTCGGTGATTCAAACTTTCATTTTAGGTCACCTCTCACCGTTTCATACTCCAACTTCCATTCAAATTTTAAAGGAATTCTACTCCAAAGGTAGGGTTGAAACGTTTGTGAAAGATGAAGTGTAATATTGTAACTTTTGAAAGAATAAATGTATTTTAATAGAAAATTTTAGGGGGTAATTTTTATATTTCATTGTTATAATATCTTGAACACAATTAGTCTTGTAGGATCAAACAACTACTTTGTTCAATTTCAGATAGATATTCTTTATAAACTTCCTATTATTGACGACATATTTCTTTGATATTCTTTCAAATGCATATGTTAATATAGACTCCCAAACATTCGAATTGGCATGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATTCTGCAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACCCCAAACTTCAGCTGTTCAGGTACTTGAGCCAATTTATATTTAATATGATTTGTTATTTCAAATATTATTTTGGTTCATGTACTTTTAGCTTTGATTCATTTGGTACATGTATGTTTAAAATGTTTATTTTGGTACATGTACTTTCAACTTTAGTTCATTTTGGTCCTATACTTTTAAAAAGCGATCATTTTGGTCCCTTCATTTTCATTTTTATCCTTTTTTTAATCAAAATTTTGGCATTACACTTTGTAAATTTGTATTAAAGAGTTTCTTTAATCTTCTTAAAGTATAGCCATAAATTCATAAATTTGTATTAAAGAGTTTCAATTGTGTATAAAATTTTTGTTAAAACTTTGAAATGGAATCAAAATGGTCACTATTCAAAAGTACATTGACTAAAATAAGCGTTTTGAGTGCACATGGACCAGAATGAGCAAAAGTTGAAAGTAAATATTTTAAAAGTAAACCAAAACTAAAGGTAAAAGGACCAAATTTGTACTTAAACCTAGTATTAATTACTCCACTCCATCTTTATTATTTTATTCATATGATATGCAGTTGGCAATGCATCCCTTAAAGTTGCTTGTTCCCATAGGCTATCCGCACATTTCTCCAATATTCAAGATGGAAGCTTGGTAAGAGGATTTATCCTTTCTCCTATTTAATAGCAAGAATTCACTTATGATACCATCATATGATTTGAGCTTTTATACTTGAGGTTCTTATTTCCCTTTTGCAACATCCAATCCTTCATTTGATTTTGGCTTTGCTATTCATGCATTGTCGTCGAGTCGGGTCACGCTTAAATGATTATTAGATGAGCCTTTTTTGGTTGATATTGATTTTCTAGTTTATTAGATTCACATTTTTTTGCAACCTTATTAATTTATGGGAACCACAATGAATCAAAAGGGCGCGCACACAAGAATGTGGTATACATCTAAAGATCTTGAATTTGAGTTGGACAACTCTGTCGATTAGGAGAGCAAGGCTTAACTAGTTTGGTCGAGGGTATATATCTCATTTAACTGGTTGAGTTATGCTCCTATTGACGTTCATGAAGTGTTTTCAATTGGTACTTTCGCTCAAATGCATTGATCATTCGACTTTTCGGCTATAAAAGTTTATAAGCCCATTAAGACCACTTAATATGTCCATTGGAAAACACTTCTAATAGTTGTACGAGAACTTTACTCTGAATTCGTAGTTTATTGGACTTTCTATTCTCAAGAATCTCAAACCATAACACATTTCATCCTTTAACTTATAAATTCACTTCTTTTTTTCAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAGAACGGAGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAACAAATAAGCATATAGCAACAACTGCCATTGAAGGATGGTTGTAATGGGTGAACTTCACTTCTCTAATCCTTTTATTTTAATGGCATTGAGAGAAAACTAAGTGAGAGACTTCATTTGAAATCTAATGGTTGGGTTTTGGGTTTGAGGGGTGAGGGAAGTTGCATCTCTTGCACATTTCGCTTCGGAAAAAGCCAAAAATCTTGTTAGGCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAATGTGTTCATCAAATTAGGGTCTGAGA

mRNA sequence

TGGGCGTTAGAAAGTGAAAAGTGTGACAGACGTTTGGATTTTGTACGGGTTGTTGTAATGGCGCGGATGTGAGCTGTATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCACTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACAGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTACCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTAATGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAGAACGGAGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAACAAATAAGCATATAGCAACAACTGCCATTGAAGGATGGTTGTAATGGGTGAACTTCACTTCTCTAATCCTTTTATTTTAATGGCATTGAGAGAAAACTAAGTGAGAGACTTCATTTGAAATCTAATGGTTGGGTTTTGGGTTTGAGGGGTGAGGGAAGTTGCATCTCTTGCACATTTCGCTTCGGAAAAAGCCAAAAATCTTGTTAGGCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAATGTGTTCATCAAATTAGGGTCTGAGA

Coding sequence (CDS)

ATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCACTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACAGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTACCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTAATGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAGAACGGAGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAA

Protein sequence

MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEIYLGDFWKLAYRKWRIMLPGLLENGSEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS
Homology
[Close]
BLAST of Cp4.1LG01g09910 vs. Swiss-Prot
Match: MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.7e-15
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1 

Query: 219  EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWE 278
            EDLS +A  +FN+ +RSL+ P S+ ++A+TWD CAR VI EYA+Q GGG+FSSKYG+WE
Sbjct: 1271 EDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGTWE 1329

[Close]
BLAST of Cp4.1LG01g09910 vs. Swiss-Prot
Match: MD15C_ARATH (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana GN=MED15C PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.8e-11
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 219 EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWED 278
           EDLS + R +F++S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE 
Sbjct: 871 EDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWET 930

Query: 279 CLHTA 284
            L  +
Sbjct: 931 VLRAS 935

[Close]
BLAST of Cp4.1LG01g09910 vs. Swiss-Prot
Match: MD15B_ARATH (Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis thaliana GN=MED15B PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-08
Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 1 

Query: 81  LENGSEKAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVM 140
           +  G  ++  + TPG+S S LL E+T  D +                 P++RLI+ +  +
Sbjct: 144 IRQGVLQSLEIGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSI 203

Query: 141 SPKALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRK 181
           SP+ALS++V DI S+V M DR+  S P   S+ + G+DL       L+ +
Sbjct: 204 SPQALSSAVCDIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

[Close]
BLAST of Cp4.1LG01g09910 vs. TrEMBL
Match: A0A0B2S019_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007050 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1 

Query: 201  DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
            +C    L     +S    EDLS++AR KF+ S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 1089 NCSPILLDKFPVESSKENEDLSVKARSKFSTSLRSLSQPMSLGEIARTWDVCARSVISEH 1148

Query: 261  ARQNGGGSFSSKYGSWEDCLHT 283
            A+Q+GGGSFSSKYG+WE+CL T
Sbjct: 1149 AQQSGGGSFSSKYGTWENCLTT 1170

[Close]
BLAST of Cp4.1LG01g09910 vs. TrEMBL
Match: K7L7Z4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G214900 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1 

Query: 201  DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
            +C    L     +S    EDLS++AR KF+ S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 1222 NCSPILLDKFPVESSKENEDLSVKARSKFSTSLRSLSQPMSLGEIARTWDVCARSVISEH 1281

Query: 261  ARQNGGGSFSSKYGSWEDCLHT 283
            A+Q+GGGSFSSKYG+WE+CL T
Sbjct: 1282 AQQSGGGSFSSKYGTWENCLTT 1303

[Close]
BLAST of Cp4.1LG01g09910 vs. TrEMBL
Match: B9SWU1_RICCO (Transcription cofactor, putative OS=Ricinus communis GN=RCOM_0011080 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1 

Query: 201  DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
            +C    L  L  +     EDLS++A+ +FN+S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 1300 NCSPILLDKLPVEVSKEYEDLSVKAKSRFNISLRSLSQPMSLGEIARTWDVCARAVISEH 1359

Query: 261  ARQNGGGSFSSKYGSWEDCLHTA 284
            A+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1360 AQQSGGGSFSSKYGTWENCLSAA 1382

[Close]
BLAST of Cp4.1LG01g09910 vs. TrEMBL
Match: Q8H6Q7_PONTR (CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 219  EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWED 278
            EDLS++A+ +F++S+RSL+ P S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+
Sbjct: 1341 EDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWEN 1400

Query: 279  CLHTA 284
            CL  A
Sbjct: 1401 CLSAA 1405

[Close]
BLAST of Cp4.1LG01g09910 vs. TrEMBL
Match: A0A067EAV8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000769mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 219  EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWED 278
            EDLS++A+ +F++S+RSL+ P S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+
Sbjct: 1187 EDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWEN 1246

Query: 279  CLHTA 284
            CL  A
Sbjct: 1247 CLSAA 1251

[Close]
BLAST of Cp4.1LG01g09910 vs. TAIR10
Match: AT1G15780.1 (AT1G15780.1 unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-16
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1 

Query: 219  EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWE 278
            EDLS +A  +FN+ +RSL+ P S+ ++A+TWD CAR VI EYA+Q GGG+FSSKYG+WE
Sbjct: 1271 EDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGTWE 1329

[Close]
BLAST of Cp4.1LG01g09910 vs. TAIR10
Match: AT2G10440.1 (AT2G10440.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-12
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 219 EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWED 278
           EDLS + R +F++S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE 
Sbjct: 871 EDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWET 930

Query: 279 CLHTA 284
            L  +
Sbjct: 931 VLRAS 935

[Close]
BLAST of Cp4.1LG01g09910 vs. TAIR10
Match: AT1G15770.1 (AT1G15770.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-09
Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 1 

Query: 81  LENGSEKAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVM 140
           +  G  ++  + TPG+S S LL E+T  D +                 P++RLI+ +  +
Sbjct: 144 IRQGVLQSLEIGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSI 203

Query: 141 SPKALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRK 181
           SP+ALS++V DI S+V M DR+  S P   S+ + G+DL       L+ +
Sbjct: 204 SPQALSSAVCDIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

[Close]
BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: gi|1012230693|ref|XP_015938307.1| (PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Arachis duranensis])

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 1 

Query: 201  DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
            +C    L     +S    EDLSL+A+ +F++S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 1219 NCSPLLLDKFPVESSKENEDLSLKAKARFSISLRSLSQPMSLGEIARTWDICARTVISEH 1278

Query: 261  ARQNGGGSFSSKYGSWEDCLHTA 284
            A+Q+GGGSFSSKYG+WEDCL +A
Sbjct: 1279 AQQSGGGSFSSKYGTWEDCLTSA 1301

[Close]
BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: gi|1021566711|ref|XP_016174596.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like [Arachis ipaensis])

HSP 1 Score: 103.6 bits (257), Expect = 5.8e-19
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 1 

Query: 201 DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
           +C    L     +S    EDLSL+A+ +F++S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 871 NCSPLLLDKFPVESSKENEDLSLKAKARFSISLRSLSQPMSLGEIARTWDICARTVISEH 930

Query: 261 ARQNGGGSFSSKYGSWEDCLHTA 284
           A+Q+GGGSFSSKYG+WEDCL +A
Sbjct: 931 AQQSGGGSFSSKYGTWEDCLTSA 953

[Close]
BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: gi|955336613|ref|XP_014634636.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Glycine max])

HSP 1 Score: 102.8 bits (255), Expect = 9.9e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1 

Query: 201  DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
            +C    L     +S    EDLS++AR KF+ S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 1155 NCSPILLDKFPVESSKENEDLSVKARSKFSTSLRSLSQPMSLGEIARTWDVCARSVISEH 1214

Query: 261  ARQNGGGSFSSKYGSWEDCLHT 283
            A+Q+GGGSFSSKYG+WE+CL T
Sbjct: 1215 AQQSGGGSFSSKYGTWENCLTT 1236

[Close]
BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: gi|734416080|gb|KHN38008.1| (hypothetical protein glysoja_007050 [Glycine soja])

HSP 1 Score: 102.8 bits (255), Expect = 9.9e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1 

Query: 201  DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
            +C    L     +S    EDLS++AR KF+ S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 1089 NCSPILLDKFPVESSKENEDLSVKARSKFSTSLRSLSQPMSLGEIARTWDVCARSVISEH 1148

Query: 261  ARQNGGGSFSSKYGSWEDCLHT 283
            A+Q+GGGSFSSKYG+WE+CL T
Sbjct: 1149 AQQSGGGSFSSKYGTWENCLTT 1170

[Close]
BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: gi|356528978|ref|XP_003533074.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Glycine max])

HSP 1 Score: 102.8 bits (255), Expect = 9.9e-19
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1 

Query: 201  DCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEY 260
            +C    L     +S    EDLS++AR KF+ S+RSL+ P S+ E+ARTWD+CAR VISE+
Sbjct: 1222 NCSPILLDKFPVESSKENEDLSVKARSKFSTSLRSLSQPMSLGEIARTWDVCARSVISEH 1281

Query: 261  ARQNGGGSFSSKYGSWEDCLHT 283
            A+Q+GGGSFSSKYG+WE+CL T
Sbjct: 1282 AQQSGGGSFSSKYGTWENCLTT 1303

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MD15A_ARATH6.7e-1561.02Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
MD15C_ARATH5.8e-1144.62Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ... [more]
MD15B_ARATH4.6e-0831.82Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis ... [more]
BLAST of Cp4.1LG01g09910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2S019_GLYSO6.9e-1957.32Uncharacterized protein OS=Glycine soja GN=glysoja_007050 PE=4 SV=1[more]
K7L7Z4_SOYBN6.9e-1957.32Uncharacterized protein OS=Glycine max GN=GLYMA_08G214900 PE=4 SV=1[more]
B9SWU1_RICCO1.2e-1855.42Transcription cofactor, putative OS=Ricinus communis GN=RCOM_0011080 PE=4 SV=1[more]
Q8H6Q7_PONTR2.0e-1866.15CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1[more]
A0A067EAV8_CITSI2.0e-1866.15Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000769mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g09910 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15780.13.7e-1661.02 unknown protein[more]
AT2G10440.13.3e-1244.62 unknown protein[more]
AT1G15770.12.6e-0931.82 unknown protein[more]
BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012230693|ref|XP_015938307.1|5.8e-1956.63PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subu... [more]
gi|1021566711|ref|XP_016174596.1|5.8e-1956.63PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like [Arachis... [more]
gi|955336613|ref|XP_014634636.1|9.9e-1957.32PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like isoform ... [more]
gi|734416080|gb|KHN38008.1|9.9e-1957.32hypothetical protein glysoja_007050 [Glycine soja][more]
gi|356528978|ref|XP_003533074.1|9.9e-1957.32PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like isoform ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09910.1Cp4.1LG01g09910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33137FAMILY NOT NAMEDcoord: 219..283
score: 9.0
NoneNo IPR availablePANTHERPTHR33137:SF4F7H2.13 PROTEIN-RELATEDcoord: 219..283
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g09910CmaCh04G012930Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g09910CmoCh04G013610Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g09910Cla022902Watermelon (97103) v1cpewmB456
Cp4.1LG01g09910ClCG11G012980Watermelon (Charleston Gray)cpewcgB357
Cp4.1LG01g09910Lsi04G007510Bottle gourd (USVL1VR-Ls)cpelsiB358
Cp4.1LG01g09910Bhi07G000961Wax gourdcpewgoB0556
Cp4.1LG01g09910Carg02024Silver-seed gourdcarcpeB1177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g09910Cucurbita pepo (Zucchini)cpecpeB036
Cp4.1LG01g09910Cucumber (Gy14) v1cgycpeB0124
Cp4.1LG01g09910Cucurbita maxima (Rimu)cmacpeB429
Cp4.1LG01g09910Cucurbita maxima (Rimu)cmacpeB434
Cp4.1LG01g09910Cucurbita moschata (Rifu)cmocpeB392
Cp4.1LG01g09910Cucurbita moschata (Rifu)cmocpeB399
Cp4.1LG01g09910Wild cucumber (PI 183967)cpecpiB417
Cp4.1LG01g09910Cucumber (Chinese Long) v2cpecuB418
Cp4.1LG01g09910Bottle gourd (USVL1VR-Ls)cpelsiB352
Cp4.1LG01g09910Melon (DHL92) v3.5.1cpemeB376
Cp4.1LG01g09910Cucumber (Gy14) v2cgybcpeB628
Cp4.1LG01g09910Melon (DHL92) v3.6.1cpemedB436
Cp4.1LG01g09910Silver-seed gourdcarcpeB1020
Cp4.1LG01g09910Silver-seed gourdcarcpeB1021
Cp4.1LG01g09910Cucumber (Chinese Long) v3cpecucB0520