CmoCh04G013610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G013610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMediator of RNA polymerase II transcription subunit 15a, putative
LocationCmo_Chr04 : 6934799 .. 6939399 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCAGTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTATTTGTTTAATCGGTTTTTGTTGCGTTTTTTTTTTTTTTTTTGTTCTTTGTTCTTTTTGCCTCAGTATCATCTCTCTGTCAGTAACTCTGTAACGCCGGCGCTTGTTTCCGTTTTTTGTGGCATGTGAGTTGGATGATGGTTTTTTACTTCTTTTTTTTCTTTATTTTTCTCTCTGTGTTGTGATTTATGCTTGTGATGATTGTTGTGGAACTGAGTTTTTTTTTTCTTTTTTCTTACTTGCGATGGTGTGATGGTGAGTGAAAGTTATCCTACAGTGAAGTTGTGGAACTTCGATTGAATCACATTTTTTAGCTATGTCTTTATGATTGATTGTGTTGCATGTTCAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACTGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGGTAAGGAATTGAGTACCGATTTCTGTTCCTTCAAAAGAGTAAAATGAAATTGGATGGCTGTTGAAGTTTCTTTACATGAATGCCTCACTTAGTTATAACTCGATGAAGGCAATTGCTTAGGCCGGGTTTGATTAATATTTTTGTTTAAGACTACTTACACTCTTAGTTTTGTTACTTTTATCACCTACTTTCTGAAAACGTTTTAAAAACTAAGTCAGTTTTTGAAAAATAATCAAAGTAGTTCTTAAAATTTTGGCTTTGTTTTGAAATTTGATTTAGAATTCGAATGTGTTCAAAACAAAATGGTCATCGAATGGGGTATTAGCAGTAAAAGTTTTAGGTATCGAGAAATTTCAACTATATACTGTATTCATTCTTTGATCTGCTCAATTAAGTTTGTTCGCTGTGGAAAATTTTTGGAGAAATTGTTTTGAGTACGATGTCTTAGAAATGTTCCTTGTTCAGTAATTACTGGTTGTGATGTTTCTTGGTGGGTTATTGCAAAGAACAAGTTAACCAAGTCGAGGATTTCCAATTATTTTCTTGTATTATCCTGTTTACATTCTCAGCAACTTTTTTTCCTACTAAAGATATGTTTGGGAGTGGTTAAAAGTACTTTTGTCATTTTCATTTCAAGGCATGCCTTAAATTATCACTCCATAATTGTTTTTTAAATGATTAAATGTATGTTTTGAAGTGATTTAGAAATGACACAAGTGATTTTAATCCTTTCTAAATCTCTCCCAAAAATGCCCTAAAGTTTTGCCATTGCTTTTGTTAGTTGATTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTTCGTTGGAAAAGGTTTTTCAGTTTCATTTCTCTTAAGAACAAATTTTTATGTACATCATAGAAATGCTGTTCTTGGCTCAATCTCAGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTATCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACAGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGGTTTGGAGGCACTATTGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAATTGAGGTGAGTGGCCATATATTTGCTTTTTTCTTTTTTGTCCCGTTCAATTTGTTTGTGGAGAATCGAATCATCAACCCTTGGGATGGTAATTGGTGTTTCATTCACTGAGTTATGTTGGATTAACGACTATCTATTTGGTTTATATCTATGATTTGAACTTGAAACATAAAATTGCATGAGGGAACCAAAAAGTGCTTTTCGCAAATGTGATCATGAACTGCCAATTAGTAGTAACTATGAGCTTAATTTTGATAAATTTTGTAAATATTCTATTTGATTAATTTGAGAAAATAAAGTGTGGAGCACTTTACTAATGAATATGAATTTAGCTTTACACCTCAAAAGTGATTAACAAGATCCATGGATGATAGTTTTGACCAGATCCTTTATTTTATTTGATACATCTTGACTGATGCATAGAATCGATATATGAAGGATAATATGTATGAGAAATTATAATGTCTAAATTATATATATCATATACTTTCAAAAGTTGCAATATTACTCTTGACCTTTCATTAACATTTCGAAACTATCCTTACTACTTTGGAATTTCGAACGGAAATGGGGGCTTAGAAAGGTGTGGCAATGACCTAGAACAATTTGGTGATTCAAATTTTCATTTTAGGTCACCCCTCACCGTTTCATACTCCAACTTCCATTCAAATTTTAAAGGAATTCTACTCCAAAGGTGGGTTCAAACGCTTGTGAAAGATGAAGTGTAATATTGTAACTTTTGAAAGAATAAGTGTATTTTTAAAAGAAAAATTTATGTGGTAATTTTATATTTCATGGTTATAATATCTTGAACACAATTAGTCTTGTAGTATCAAACAACTACTTTGTTCAATTTCAGATAGATATTCTTTATAAACTTCCTATTATTGACGACATATTTCTTTCATATTCTTTCAAATGCATATGTTAATATAGACTCCCAAACATTCGAATTGGCATGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATCCTGGAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACACCAAACTTCAGCTATTCAGGTACTTGAGCCAATTTATAATTAATATGATTCGTTATTTCAAATATTATTTTGGTTCATGTACTTTTAGCTTTGATTCATTTGGTACATGTATGTTTAAAATGTTTATTTTGGTACATGTACTTTCAACTTTAGTTCATTTTGGTCCTATACTTTTAAAAAGCGATCATTTTGGTCCCTTCATTTTCATTTTTATCCTTTTTTTTAATCAAAATTTTGGCATTACACTTTGTAAATTTGTATTAAAGAGTTTCTTTAATCTTCTTTAAAGTATAGCCATAAATTCATAAATTTGTATTAAATAGTTTCAATTGTGTATAAAATTTTTGTTAAAACTTTGAAATGGAATCAAAATGGTCACTATTCAAAAGTACATTGACTAAAATAAGCGTTCTGAGTGCACATGGACCAGACTGAACAAAAGTTGAAAGTAAATATTTTAAAAGTAAACCAAAACTAAAGGTAAAAGGACCAAATTTGTACTTAAACCTAGTATTAATTACTCCACTCCATCTTTCTTATTTTATTCATATGATATGCAGTTGGCAATGCATCCCTTAAAGTTGCTTGTTCCCATAGGCTATCCGCACATTTCTCCAATATTCAAGATGGAAGCTTGGTAAGAGGATTTATCCTTTCTCCTATTTAATAGCAAGAATTCTCTTATGATACCATCATATGATTTGAGCTTTTGTACTTGAGGTTCTTATTTCCCTTTTGCAACATCCAATCCTTCATTTGATTTTGGCTTTGCTATTCATGCATTGTAGTCGAGCTGGGTCACTCGTAACTGATATTATTAGATGAGCCTTTTTTGGTAGATATTGATTTTCTAGTTTATTAGATTCACATTTTTTTGCAACCTTATTAATTTATGGGAACCACAATGAATCAAAAGGGCGCGCACACAAGAATGTGGTATACATCTAAAGATCTTGAATTTGAGTTGGACAACTCTGTCGACTAGGAGAGAAAGGCTTAACTAGTTTGGTTGAGGGTATATATCTCATTTAACTGAGTTATGCTCATATTGACGTTCATGAAGTGTTTTCAATTGGTATTTAGCTCAAATGCATTGATGATTCGGACTTTTCGGCTATAAAAGTTTATAAGCCCATTAAGACCACTTAATATGTCCATTGGAAAACACTTCTAATAGTTGTACGAGAACTTTACTCTGAATTCATAGGTTATTCGACTTTCTATTCTCAAGAATCTCAAACCATTACACATTTCATCCTTTTAACTTATAAATTCACTTCTTTTTTTCAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAAAACGGCGGTGGCAGTTTTAGTTCAAAGTATGGCTCCTGGGAGGACTGTCTTCATACTGCTTGGTCATAA

mRNA sequence

ATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCAGTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACTGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGTTGATTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTATCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACAGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGGTTTGGAGGCACTATTGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAATTGAGACTCCCAAACATTCGAATTGGCATGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATCCTGGAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACACCAAACTTCAGCTATTCAGTTGGCAATGCATCCCTTAAAGTTGCTTGTTCCCATAGGCTATCCGCACATTTCTCCAATATTCAAGATGGAAGCTTGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAAAACGGCGGTGGCAGTTTTAGTTCAAAGTATGGCTCCTGGGAGGACTGTCTTCATACTGCTTGGTCATAA

Coding sequence (CDS)

ATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCAGTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACTGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGTTGATTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTATCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACAGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGGTTTGGAGGCACTATTGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAATTGAGACTCCCAAACATTCGAATTGGCATGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATCCTGGAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACACCAAACTTCAGCTATTCAGTTGGCAATGCATCCCTTAAAGTTGCTTGTTCCCATAGGCTATCCGCACATTTCTCCAATATTCAAGATGGAAGCTTGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAAAACGGCGGTGGCAGTTTTAGTTCAAAGTATGGCTCCTGGGAGGACTGTCTTCATACTGCTTGGTCATAA
Homology
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BLAST of CmoCh04G013610 vs. Swiss-Prot
Match: MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.0e-43
Identity = 123/329 (37.39%), Postives = 180/329 (54.71%), Query Frame = 1 

Query: 109  KAFIVSTPGMSPSSLLEEVTDSDRD--------NDKCCVT--PLQRLIKMVNVMSPKALS 168
            ++  + TPG+S S LL+E T  D +        + K   T  P++RLI+ V  +SP+ALS
Sbjct: 1004 QSLAIGTPGISASPLLQEFTSPDGNILNSSTITSGKPSATELPIERLIRAVKSISPQALS 1063

Query: 169  ASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRH 228
            ++VSDI S+V M DR++ SAP N S+ +VG DL      RL+ R      G + +++ + 
Sbjct: 1064 SAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKR 1123

Query: 229  YRCLMDCE--------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQ 288
            +   M           G +        +  +E+   S+        + +LLEEI+ IN++
Sbjct: 1124 HTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKKARTETEHALLEEIKEINQR 1183

Query: 289  LIYTEVSICDKDMVTTDPG----ATIGRSEGILVECSFGAVCTLSHLISHQTSAIQLAMH 348
            LI T V I D D    DP     ++IG  EG  V  SF AV     L +H +S     + 
Sbjct: 1184 LIDTVVEISD-DEDAADPSEVAISSIG-CEGTTVRFSFIAVSLSPALKAHLSSTQMSPIQ 1243

Query: 349  PLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHPFSISEVART 408
            PL+LLVP  YP+ SP   ++  P       EDLS +A  +FN+ +RSL+ P S+ ++A+T
Sbjct: 1244 PLRLLVPCSYPNGSPSL-LDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKT 1303

Query: 409  WDMCARDVISEYARQNGGGSFSSKYGSWE 411
            WD CAR VI EYA+Q GGG+FSSKYG+WE
Sbjct: 1304 WDACARAVICEYAQQFGGGTFSSKYGTWE 1329

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BLAST of CmoCh04G013610 vs. Swiss-Prot
Match: MD15C_ARATH (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana GN=MED15C PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.1e-29
Identity = 89/293 (30.38%), Postives = 139/293 (47.44%), Query Frame = 1 

Query: 141 PLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR 200
           P+ RLIK     SPK+L+ SVS+I S++ M D +  S P   S G     L   ++ R R
Sbjct: 659 PIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFP---SSGGSRAGLGEDLSERTR 718

Query: 201 RKCSRFGGTIGSRRTRHYRCL---MDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQ 260
              +     +  R  R    +   M  +      L +  S ++ T   S     ++    
Sbjct: 719 NFTTHEETNLSKRMKRSINIVPPDMSSQIDSYEQLSSLESEVVSTTS-SGLKVNNIAPGY 778

Query: 261 SLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQT 320
           +LL+EI+  N +L+ T V ICD+D            S G +V C++  V   +    H  
Sbjct: 779 ALLQEIKETNGRLVETVVEICDED------------SLGTIVTCTYAPVALSATFKDHYK 838

Query: 321 SA----------IQLAMHPLKLLVPIGYPHISPI----FKMEACPTGCEDLSLQAREKFN 380
           S           +Q  + PL+LL P+ YP+ SPI       +      EDLS + R +F+
Sbjct: 839 SGKIIFYVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEEISFDTSVHKYEDLSARTRSRFS 898

Query: 381 MSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
           +S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE  L  +
Sbjct: 899 LSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWETVLRAS 935

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BLAST of CmoCh04G013610 vs. Swiss-Prot
Match: MD15B_ARATH (Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis thaliana GN=MED15B PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-07
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 113 VSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPKALSASVS 172
           + TPG+S S LL E+T  D +                 P++RLI+ +  +SP+ALS++V 
Sbjct: 154 IGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSISPQALSSAVC 213

Query: 173 DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRK 203
           DI S+V M DR++ S P   S+ + G+DL       L+ +
Sbjct: 214 DIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

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BLAST of CmoCh04G013610 vs. TrEMBL
Match: B9SWU1_RICCO (Transcription cofactor, putative OS=Ricinus communis GN=RCOM_0011080 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 150/327 (45.87%), Postives = 195/327 (59.63%), Query Frame = 1 

Query: 113  VSTPGMSPSSLLEEVTDSD--------RDNDKCCVT--PLQRLIKMVNVMSPKALSASVS 172
            + TPG+S S LL E T SD          + K  VT  PL+RLIK V  MSPKALSASVS
Sbjct: 1057 IGTPGISASPLLAEFTGSDVGLANTLTTASGKSTVTEQPLERLIKAVKSMSPKALSASVS 1116

Query: 173  DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRHYRCL 232
            DI S+V M DR++SSAP N S+ AVG DL      RL+ R      G  G+R+ R Y   
Sbjct: 1117 DIGSVVSMIDRIASSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGMSGTRKMRRYTSA 1176

Query: 233  MDCE----GFDLSSLFTQ----RSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYT 292
            M          +S  F Q     +  +E+   S+     L    +LLEEIR IN++LI T
Sbjct: 1177 MPLNVVSSASSISDSFKQFNGAETSELESTATSSVKRPRLEANHALLEEIREINQRLIDT 1236

Query: 293  EVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQLAMHPLKLLVPI 352
             V I ++D+  T   AT G  EG +V+CSF AV    +L S   SA    + PL+LLVP 
Sbjct: 1237 VVDISEEDVDPTAGAATAGGGEGTIVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPT 1296

Query: 353  GYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDV 412
             YP+ SPI  ++  P       EDLS++A+ +FN+S+RSL+ P S+ E+ARTWD+CAR V
Sbjct: 1297 NYPNCSPIL-LDKLPVEVSKEYEDLSVKAKSRFNISLRSLSQPMSLGEIARTWDVCARAV 1356

Query: 413  ISEYARQNGGGSFSSKYGSWEDCLHTA 417
            ISE+A+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1357 ISEHAQQSGGGSFSSKYGTWENCLSAA 1382

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BLAST of CmoCh04G013610 vs. TrEMBL
Match: A0A067EEL3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000769mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 148/346 (42.77%), Postives = 195/346 (56.36%), Query Frame = 1 

Query: 102  NDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDND--------KCCVT--PLQRLIKMVNV 161
            + A  A  +  + TPG+S S LL E T  D  +         K  VT  PL+RLIK V  
Sbjct: 929  SSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKS 988

Query: 162  MSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTI 221
            MSPKALSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R      G+ 
Sbjct: 989  MSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSS 1048

Query: 222  GSRRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGFSLP 281
            G R+ R Y   M                   G + S L +  +  I+ P+        + 
Sbjct: 1049 GPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPR--------IE 1108

Query: 282  VKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLIS 341
               +LLEEIR IN++LI T V I D+D   T  G+     EG +V+CSF AV    +L S
Sbjct: 1109 ANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKS 1168

Query: 342  HQTSAIQLAMHPLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLA 401
               SA    + PL+LLVP  YP+ SPI  ++  P       EDLS++A+ +F++S+RSL+
Sbjct: 1169 QYASAQMSPIQPLRLLVPTNYPNCSPIL-LDKFPVEISKEYEDLSVKAKSRFSISLRSLS 1228

Query: 402  HPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             P S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1229 QPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1265

[Close]
BLAST of CmoCh04G013610 vs. TrEMBL
Match: V4SUA9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024717mg PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 148/344 (43.02%), Postives = 194/344 (56.40%), Query Frame = 1 

Query: 104  AAQAEKAFIVSTPGMSPSSLLEEVTDSDRDND--------KCCVT--PLQRLIKMVNVMS 163
            A  A  +  + TPG+S S LL E T  D  +         K  VT  PL+RLIK V  MS
Sbjct: 1049 AQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMS 1108

Query: 164  PKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGS 223
            PKALSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R      G+ G 
Sbjct: 1109 PKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGP 1168

Query: 224  RRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVK 283
            R+ R Y   M                   G + S L +  +  I+ P+        +   
Sbjct: 1169 RKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPR--------IEAN 1228

Query: 284  QSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQ 343
             +LLEEIR IN++LI T V I D+D   T  G+     EG +V+CSF AV    +L S  
Sbjct: 1229 HALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQY 1288

Query: 344  TSAIQLAMHPLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHP 403
             SA    + PL+LLVP  YP+ SPI  ++  P       EDLS++A+ +F++S+RSL+ P
Sbjct: 1289 ASAQMSPIQPLRLLVPTNYPNCSPIL-LDKFPVEISKEYEDLSVKAKSRFSISLRSLSQP 1348

Query: 404  FSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1349 MSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1383

[Close]
BLAST of CmoCh04G013610 vs. TrEMBL
Match: Q8H6Q7_PONTR (CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 148/344 (43.02%), Postives = 194/344 (56.40%), Query Frame = 1 

Query: 104  AAQAEKAFIVSTPGMSPSSLLEEVTDSDRDND--------KCCVT--PLQRLIKMVNVMS 163
            A  A  +  + TPG+S S LL E T  D  +         K  VT  PL+RLIK V  MS
Sbjct: 1071 AQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMS 1130

Query: 164  PKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGS 223
            PKALSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R      G+ G 
Sbjct: 1131 PKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGP 1190

Query: 224  RRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVK 283
            R+ R Y   M                   G + S L +  +  I+ P+        +   
Sbjct: 1191 RKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPR--------MEAN 1250

Query: 284  QSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQ 343
             +LLEEIR IN++LI T V I D+D   T  G+     EG +V+CSF AV    +L S  
Sbjct: 1251 HALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQY 1310

Query: 344  TSAIQLAMHPLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHP 403
             SA    + PL+LLVP  YP+ SPI  ++  P       EDLS++A+ +F++S+RSL+ P
Sbjct: 1311 ASAQMSPIQPLRLLVPTNYPNCSPIL-LDKFPVEISKEYEDLSVKAKSRFSISLRSLSQP 1370

Query: 404  FSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1371 MSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1405

[Close]
BLAST of CmoCh04G013610 vs. TrEMBL
Match: U5GHX4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s02320g PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 144/346 (41.62%), Postives = 193/346 (55.78%), Query Frame = 1 

Query: 94   NFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVT----------PLQ 153
            N ++ P V  A     A  + TPG+S S LL E T  D  +     T          PL+
Sbjct: 951  NIVHQPSVAQAPAPSLA--IGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQPLE 1010

Query: 154  RLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RK 213
            RLIK V  +SPKALSASV DI S+V M DR++ SAP N S+ A G DL      RL+ R 
Sbjct: 1011 RLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAPGNGSRAAAGEDLVAMTKCRLQARN 1070

Query: 214  CSRFGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFS--------LP 273
                 G  GSR+ R +   M       +   +   +    P+ S+    +        + 
Sbjct: 1071 YITQDGMTGSRKMRRHTSAMPLNVVSSAGSVSDSFKQFTGPETSDLESTATSSVKRPRIE 1130

Query: 274  VKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLIS 333
               +LLEEIR IN++LI T V I D+D+ +T   AT    EG +V+CSF AV    +L S
Sbjct: 1131 ANHALLEEIREINQRLIDTVVDISDEDVDSTAVAATAEGGEGTIVKCSFSAVALSQNLKS 1190

Query: 334  HQTSAIQLAMHPLKLLVPIGYPHISPI----FKMEACPTGCEDLSLQAREKFNMSVRSLA 393
               SA    + PL+LLVP  YP  SPI    F +E      EDLS++A+ +F++S+RSL+
Sbjct: 1191 QYASAQMSPIQPLRLLVPTNYPSCSPILLDRFPVEVSKE-YEDLSIKAKSRFSISLRSLS 1250

Query: 394  HPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             P S+ E+ARTWD+CAR VISE+A+Q+GGG+FSSKYGSWE+CL  A
Sbjct: 1251 QPMSLGEIARTWDVCARVVISEHAQQSGGGTFSSKYGSWENCLSAA 1293

[Close]
BLAST of CmoCh04G013610 vs. TAIR10
Match: AT1G15780.1 (AT1G15780.1 unknown protein)

HSP 1 Score: 176.8 bits (447), Expect = 2.8e-44
Identity = 123/329 (37.39%), Postives = 180/329 (54.71%), Query Frame = 1 

Query: 109  KAFIVSTPGMSPSSLLEEVTDSDRD--------NDKCCVT--PLQRLIKMVNVMSPKALS 168
            ++  + TPG+S S LL+E T  D +        + K   T  P++RLI+ V  +SP+ALS
Sbjct: 1004 QSLAIGTPGISASPLLQEFTSPDGNILNSSTITSGKPSATELPIERLIRAVKSISPQALS 1063

Query: 169  ASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRH 228
            ++VSDI S+V M DR++ SAP N S+ +VG DL      RL+ R      G + +++ + 
Sbjct: 1064 SAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKR 1123

Query: 229  YRCLMDCE--------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQ 288
            +   M           G +        +  +E+   S+        + +LLEEI+ IN++
Sbjct: 1124 HTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKKARTETEHALLEEIKEINQR 1183

Query: 289  LIYTEVSICDKDMVTTDPG----ATIGRSEGILVECSFGAVCTLSHLISHQTSAIQLAMH 348
            LI T V I D D    DP     ++IG  EG  V  SF AV     L +H +S     + 
Sbjct: 1184 LIDTVVEISD-DEDAADPSEVAISSIG-CEGTTVRFSFIAVSLSPALKAHLSSTQMSPIQ 1243

Query: 349  PLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHPFSISEVART 408
            PL+LLVP  YP+ SP   ++  P       EDLS +A  +FN+ +RSL+ P S+ ++A+T
Sbjct: 1244 PLRLLVPCSYPNGSPSL-LDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKT 1303

Query: 409  WDMCARDVISEYARQNGGGSFSSKYGSWE 411
            WD CAR VI EYA+Q GGG+FSSKYG+WE
Sbjct: 1304 WDACARAVICEYAQQFGGGTFSSKYGTWE 1329

[Close]
BLAST of CmoCh04G013610 vs. TAIR10
Match: AT2G10440.1 (AT2G10440.1 unknown protein)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-30
Identity = 89/293 (30.38%), Postives = 139/293 (47.44%), Query Frame = 1 

Query: 141 PLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR 200
           P+ RLIK     SPK+L+ SVS+I S++ M D +  S P   S G     L   ++ R R
Sbjct: 659 PIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFP---SSGGSRAGLGEDLSERTR 718

Query: 201 RKCSRFGGTIGSRRTRHYRCL---MDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQ 260
              +     +  R  R    +   M  +      L +  S ++ T   S     ++    
Sbjct: 719 NFTTHEETNLSKRMKRSINIVPPDMSSQIDSYEQLSSLESEVVSTTS-SGLKVNNIAPGY 778

Query: 261 SLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQT 320
           +LL+EI+  N +L+ T V ICD+D            S G +V C++  V   +    H  
Sbjct: 779 ALLQEIKETNGRLVETVVEICDED------------SLGTIVTCTYAPVALSATFKDHYK 838

Query: 321 SA----------IQLAMHPLKLLVPIGYPHISPI----FKMEACPTGCEDLSLQAREKFN 380
           S           +Q  + PL+LL P+ YP+ SPI       +      EDLS + R +F+
Sbjct: 839 SGKIIFYVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEEISFDTSVHKYEDLSARTRSRFS 898

Query: 381 MSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
           +S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE  L  +
Sbjct: 899 LSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWETVLRAS 935

[Close]
BLAST of CmoCh04G013610 vs. TAIR10
Match: AT1G15770.1 (AT1G15770.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-08
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 113 VSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPKALSASVS 172
           + TPG+S S LL E+T  D +                 P++RLI+ +  +SP+ALS++V 
Sbjct: 154 IGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSISPQALSSAVC 213

Query: 173 DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRK 203
           DI S+V M DR++ S P   S+ + G+DL       L+ +
Sbjct: 214 DIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

[Close]
BLAST of CmoCh04G013610 vs. NCBI nr
Match: gi|255579228|ref|XP_002530460.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Ricinus communis])

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 150/327 (45.87%), Postives = 195/327 (59.63%), Query Frame = 1 

Query: 113  VSTPGMSPSSLLEEVTDSD--------RDNDKCCVT--PLQRLIKMVNVMSPKALSASVS 172
            + TPG+S S LL E T SD          + K  VT  PL+RLIK V  MSPKALSASVS
Sbjct: 1057 IGTPGISASPLLAEFTGSDVGLANTLTTASGKSTVTEQPLERLIKAVKSMSPKALSASVS 1116

Query: 173  DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRHYRCL 232
            DI S+V M DR++SSAP N S+ AVG DL      RL+ R      G  G+R+ R Y   
Sbjct: 1117 DIGSVVSMIDRIASSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGMSGTRKMRRYTSA 1176

Query: 233  MDCE----GFDLSSLFTQ----RSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYT 292
            M          +S  F Q     +  +E+   S+     L    +LLEEIR IN++LI T
Sbjct: 1177 MPLNVVSSASSISDSFKQFNGAETSELESTATSSVKRPRLEANHALLEEIREINQRLIDT 1236

Query: 293  EVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQLAMHPLKLLVPI 352
             V I ++D+  T   AT G  EG +V+CSF AV    +L S   SA    + PL+LLVP 
Sbjct: 1237 VVDISEEDVDPTAGAATAGGGEGTIVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPT 1296

Query: 353  GYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDV 412
             YP+ SPI  ++  P       EDLS++A+ +FN+S+RSL+ P S+ E+ARTWD+CAR V
Sbjct: 1297 NYPNCSPIL-LDKLPVEVSKEYEDLSVKAKSRFNISLRSLSQPMSLGEIARTWDVCARAV 1356

Query: 413  ISEYARQNGGGSFSSKYGSWEDCLHTA 417
            ISE+A+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1357 ISEHAQQSGGGSFSSKYGTWENCLSAA 1382

[Close]
BLAST of CmoCh04G013610 vs. NCBI nr
Match: gi|641833314|gb|KDO52330.1| (hypothetical protein CISIN_1g000769mg [Citrus sinensis])

HSP 1 Score: 228.0 bits (580), Expect = 3.0e-56
Identity = 148/346 (42.77%), Postives = 195/346 (56.36%), Query Frame = 1 

Query: 102  NDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDND--------KCCVT--PLQRLIKMVNV 161
            + A  A  +  + TPG+S S LL E T  D  +         K  VT  PL+RLIK V  
Sbjct: 929  SSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKS 988

Query: 162  MSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTI 221
            MSPKALSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R      G+ 
Sbjct: 989  MSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSS 1048

Query: 222  GSRRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGFSLP 281
            G R+ R Y   M                   G + S L +  +  I+ P+        + 
Sbjct: 1049 GPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPR--------IE 1108

Query: 282  VKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLIS 341
               +LLEEIR IN++LI T V I D+D   T  G+     EG +V+CSF AV    +L S
Sbjct: 1109 ANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKS 1168

Query: 342  HQTSAIQLAMHPLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLA 401
               SA    + PL+LLVP  YP+ SPI  ++  P       EDLS++A+ +F++S+RSL+
Sbjct: 1169 QYASAQMSPIQPLRLLVPTNYPNCSPIL-LDKFPVEISKEYEDLSVKAKSRFSISLRSLS 1228

Query: 402  HPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             P S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1229 QPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1265

[Close]
BLAST of CmoCh04G013610 vs. NCBI nr
Match: gi|568821583|ref|XP_006465237.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Citrus sinensis])

HSP 1 Score: 228.0 bits (580), Expect = 3.0e-56
Identity = 148/346 (42.77%), Postives = 195/346 (56.36%), Query Frame = 1 

Query: 102  NDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDND--------KCCVT--PLQRLIKMVNV 161
            + A  A  +  + TPG+S S LL E T  D  +         K  VT  PL+RLIK V  
Sbjct: 1042 SSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKS 1101

Query: 162  MSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTI 221
            MSPKALSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R      G+ 
Sbjct: 1102 MSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSS 1161

Query: 222  GSRRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGFSLP 281
            G R+ R Y   M                   G + S L +  +  I+ P+        + 
Sbjct: 1162 GPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPR--------IE 1221

Query: 282  VKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLIS 341
               +LLEEIR IN++LI T V I D+D   T  G+     EG +V+CSF AV    +L S
Sbjct: 1222 ANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKS 1281

Query: 342  HQTSAIQLAMHPLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLA 401
               SA    + PL+LLVP  YP+ SPI  ++  P       EDLS++A+ +F++S+RSL+
Sbjct: 1282 QYASAQMSPIQPLRLLVPTNYPNCSPIL-LDKFPVEISKEYEDLSVKAKSRFSISLRSLS 1341

Query: 402  HPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             P S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1342 QPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1378

[Close]
BLAST of CmoCh04G013610 vs. NCBI nr
Match: gi|24461867|gb|AAN62354.1|AF506028_23 (CTV.22 [Citrus trifoliata])

HSP 1 Score: 227.6 bits (579), Expect = 3.9e-56
Identity = 148/344 (43.02%), Postives = 194/344 (56.40%), Query Frame = 1 

Query: 104  AAQAEKAFIVSTPGMSPSSLLEEVTDSDRDND--------KCCVT--PLQRLIKMVNVMS 163
            A  A  +  + TPG+S S LL E T  D  +         K  VT  PL+RLIK V  MS
Sbjct: 1071 AQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMS 1130

Query: 164  PKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGS 223
            PKALSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R      G+ G 
Sbjct: 1131 PKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGP 1190

Query: 224  RRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVK 283
            R+ R Y   M                   G + S L +  +  I+ P+        +   
Sbjct: 1191 RKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPR--------MEAN 1250

Query: 284  QSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQ 343
             +LLEEIR IN++LI T V I D+D   T  G+     EG +V+CSF AV    +L S  
Sbjct: 1251 HALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQY 1310

Query: 344  TSAIQLAMHPLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHP 403
             SA    + PL+LLVP  YP+ SPI  ++  P       EDLS++A+ +F++S+RSL+ P
Sbjct: 1311 ASAQMSPIQPLRLLVPTNYPNCSPIL-LDKFPVEISKEYEDLSVKAKSRFSISLRSLSQP 1370

Query: 404  FSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1371 MSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1405

[Close]
BLAST of CmoCh04G013610 vs. NCBI nr
Match: gi|567869749|ref|XP_006427496.1| (hypothetical protein CICLE_v10024717mg [Citrus clementina])

HSP 1 Score: 227.6 bits (579), Expect = 3.9e-56
Identity = 148/344 (43.02%), Postives = 194/344 (56.40%), Query Frame = 1 

Query: 104  AAQAEKAFIVSTPGMSPSSLLEEVTDSDRDND--------KCCVT--PLQRLIKMVNVMS 163
            A  A  +  + TPG+S S LL E T  D  +         K  VT  PL+RLIK V  MS
Sbjct: 1049 AQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMS 1108

Query: 164  PKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGS 223
            PKALSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R      G+ G 
Sbjct: 1109 PKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGP 1168

Query: 224  RRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVK 283
            R+ R Y   M                   G + S L +  +  I+ P+        +   
Sbjct: 1169 RKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPR--------IEAN 1228

Query: 284  QSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQ 343
             +LLEEIR IN++LI T V I D+D   T  G+     EG +V+CSF AV    +L S  
Sbjct: 1229 HALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQY 1288

Query: 344  TSAIQLAMHPLKLLVPIGYPHISPIFKMEACPTGC----EDLSLQAREKFNMSVRSLAHP 403
             SA    + PL+LLVP  YP+ SPI  ++  P       EDLS++A+ +F++S+RSL+ P
Sbjct: 1289 ASAQMSPIQPLRLLVPTNYPNCSPIL-LDKFPVEISKEYEDLSVKAKSRFSISLRSLSQP 1348

Query: 404  FSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 417
             S+ E+ARTWD+CAR VISEYA+Q+GGGSFSSKYG+WE+CL  A
Sbjct: 1349 MSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1383

The following BLAST results are available for this feature:
BLAST of CmoCh04G013610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MD15A_ARATH5.0e-4337.39Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
MD15C_ARATH4.1e-2930.38Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ... [more]
MD15B_ARATH2.6e-0734.00Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis ... [more]
BLAST of CmoCh04G013610 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SWU1_RICCO1.0e-5845.87Transcription cofactor, putative OS=Ricinus communis GN=RCOM_0011080 PE=4 SV=1[more]
A0A067EEL3_CITSI2.1e-5642.77Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000769mg PE=4 SV=1[more]
V4SUA9_9ROSI2.7e-5643.02Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024717mg PE=4 SV=1[more]
Q8H6Q7_PONTR2.7e-5643.02CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1[more]
U5GHX4_POPTR1.0e-5541.62Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s02320g PE=4 SV=1[more]
BLAST of CmoCh04G013610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15780.12.8e-4437.39 unknown protein[more]
AT2G10440.12.3e-3030.38 unknown protein[more]
AT1G15770.11.5e-0834.00 unknown protein[more]
BLAST of CmoCh04G013610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|255579228|ref|XP_002530460.1|1.4e-5845.87PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Ricinus comm... [more]
gi|641833314|gb|KDO52330.1|3.0e-5642.77hypothetical protein CISIN_1g000769mg [Citrus sinensis][more]
gi|568821583|ref|XP_006465237.1|3.0e-5642.77PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [C... [more]
gi|24461867|gb|AAN62354.1|AF506028_233.9e-5643.02CTV.22 [Citrus trifoliata][more]
gi|567869749|ref|XP_006427496.1|3.9e-5643.02hypothetical protein CICLE_v10024717mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G013610.1CmoCh04G013610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33137FAMILY NOT NAMEDcoord: 113..416
score: 1.8
NoneNo IPR availablePANTHERPTHR33137:SF4F7H2.13 PROTEIN-RELATEDcoord: 113..416
score: 1.8