Carg02024 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02024
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit 15a like
Location	Cucurbita_argyrosperma_scaffold_003 : 1778606 .. 1784816 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCAGGAAGGATCAAGTACCAGAAGTAAGGGCTAGGAAGATGAACACCACAATTTTGAGATTTCTCAAGCTTTGTCCCGCCATTCTTTTCTTCTCTTATTCCTTGCTACAATGGAATGCTTGGGTATCAGTTCCCCATTTTATATCCGTGAAACGCCTCATCTTTGTAACGTCTTCTTTATTTCCTTGCGATTTCAAGGAAAGAATAATCACGTTTTGTAACGTCTATGCTGGCCGTTCTTGATTTAAAAGGAAGTTGTTTTATTTTATTCTTGTCTAGTCATGCGGTTAACATTGATTGATGGACGTAAATTATACTATTATTAAAAGTAACCTATTTCTTAAATACAAATTTAAAGCATGAGCCCAACCTTATTTGTATTAATTATCTTTCATAATCTGTATAAAAGGTAGGAATTTAGGTGTACTATTGCTATACCTCTTTTCCTATGCGAGAAATTTAAGATGATAAGCGCAACGATTAGCATGTAGTATAGCCCGGTTTATAAAATCTTCAACTGGAAAGCTTAAGTTAATTATGGTTTTTGTGATGGTTAAAGATTACCGTTTAATTGGTGGGTGTGAAATTCAGTTGTTGATATCTTCGGTGCATTGAAATCATAAAGATTGCAGATATCAAAAATAGTTTTGATGATTTGGATTTAGAACATGGCCTGTTTCCTTGTCGTATTAATTTATAATAACCTTCTTTCCACATTTTTATTTTTTAATATTTTAGTCTCAATTATACAAATATCTAAATATTTTAATTAGTTTTTTTATTATGTCAATTATTTTTTAACTCGTGAGCGACTATGTGTAGAGTATATGGTACATTGAAGTACGTCATGTGTTGCATGCTGAGTAATTTTGTTAATAGCATGATATGATGCTTAGCATGATGAATGTTTACTTCTTTGGCGTTACGATGTATTGTATAGTGTGCGTATTGATATATGCATAGTATTAAGGCCTTAGACTTAAGCAACCTTATATTGGTTTATAGAACCATGCCCGGAGGACGAGGAAGAGGAAGAGGAAAAGGAAGAGGAAGACGAGGAAGGGGGCGACTCCGTCATAGAGAAGTAGGACGAGGTGTGGCAGTAGAGGGCCCACCTCAAGAAAGATCAGAGATTGGGCCGGTAACAGTTACGCCGCCCCAGTCTTACCACGAGTTGAGCTACCTCCTCTAGCTCCACTACAAGTTGAGCCTCCACCACCAGTACAACCTCCACCACAAGTAGAACCTCCACCCCAGCCTACCCTACCACTCCAAGTCACACCTGAAGCTGCACCCCCAGTGGGTGGAGTAGATGCTAATACTAGGTTAATGTGTGACTCCATCCAAGCCCTAATTCAAACCTTGGTAACCAATCAGCAAGCCAGTCTACAACAGGCCCAGGAACAAGCCCAAGCACAGGCCCAGGCACAGGCGTTGGCACTGGCACAGGTACAGGCACAGGCACAGGCACAGGCACAGGCCATTGCTCAGGCCAATGCCCCAGTAAACCCTCCACAACCGGTTAGATGTTCAAACTGGATAAGGGATTTCAAGAGATACGACCCTCGACCATTCACTGGTTCCCTGGTAGACCCCATAGAAGCCCAAATGTGGATTGCAGCGGTGGAAACCACCTTTGAGACTATGGAGTGCCCAGAGAACCAAAAGGTCGCCTGTGCAATCTTCGTCCTACAAAAGGACGCAGAGATATGGTGGAGAGATAACAAAACCCTCCTTAACCCAGAAGGGGGACCAATGAACTTGGAACGATTTAAGGAGACCTTCCTTAAAGAATATTATCCTAAGTCAGAGCGACTTAAAAGGCAGCAGGAGTTCGCTCACCTGGTACAGGGAGGACTCACAGTGGAGAAGTACAACAGAGAGTTTAATAGACTCAAGAGATTTGCACCGTCCATGGTGGACACTGAGGATTGCTCAAGAAGTGGCAGTAAACCAAAGGTAGGGCATCGAGAAACACGTGTGAAAGAGCAGTTATAATTGGGGCAGAATGCGTCCTCATGAATCAGGCAGCTTTGATGATCCTGACCGTCCACCCACCAGGCACGTAGGCACCTTCCAATAATTAGAGTACATTCGTCTTCTCTAGATTGTGGGTTCTCGTGAAAATAGCCTATGGAAACTACTATGAGCGACTAGCACTCCTCTCCCGGTAAGTCTAGTAACCTGCATGGAACCCTATCAGGAATACTACAAAGATGGCCGGTGCACAGAGCGTGACGTGAAAAGAACAATGTGTTGAACTATCTGTGCGAAACACTTACACAGGCAAGGTGGATGTGCATTATGATGGCAAGACCAGTAAGCGTAGTTATAATATCAGATGGTCAGGAAGGGGTCTACATCGCTGTTGCACTTTTACAATAACGCCGGAAATGCTGGGCTCTGCAGCATCATGATTTGCAACCCGGACCCAGAGTTGAGTAGAGCAACCGGATCACACCAGCACCACGCGAAGCTCAAGCTAGGGCATGACTCGTGAACCAGAAGGGACACTGGTGAGGTTCCGACGCCGTGGTTGACAGGACACTATCCATTTTAGGTCATTTGCTTTTAGTCCTTTAGCAGTAAAAGTTTTAGGTATCGAGAAATTTCAACTATATACTGTATTCATTCTTTGATCTGCTCAATTAAGTTTGTTCGCTGTGGAAAATTTTGGGAGAAATTGTTTTGAGTACGACGTCTTAGAAATGTTTCTTGTTCAGTAACTACTGGTTGTGATGTTTCTTGGTGGGTTATTGCAAAGAACAAGTTAACCAAGTCGAGGATTTCCAATTATTTTCTTGTATTATCCTGTTTACATTCTCAGCAACTTTTTTTCCTACTAAAGATATGTTTGGGAGTGGTTAAAAGTACTTCTGTCATTTTCATTTCAAAGCATGCCTTAAATTATCACTCCATAATTGTTTTTTAAATGATTAAATGTCTGTTTTGAAGTGATTTAGAAATGACATAAGTGATTTTAATCCTTTCTAAATCTCTCCCAAAAATGCCCTAAAGTTTTGCCATTGCTTTTGTTAGTTGATTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTTCGTTGGAAAAGGTTTTTCAGTTTCATTTCTCTTAAGAACAAATTTTTATGTACATCATAGAAATGCTGTTCTTGGCTCAATCTCAGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTATCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTATTGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAATTGAGGTGAGTGGCCATATATTTGCTTTTTTCTTTTTTGTCCCGTTCAATTTGTTTGTGGAGAATCGAATCATCAACCCTTGGGATGGTAATTGGTGTTTCATTCACTGAGTTATGTTGGATTAACGACTATCTATTTGGTTTATATCTATGATTTGAACTTGAAACATAAAATTGCATGAGGGAACCAAAAAGTGCTTTTCGCAAATGTGATCATGAACTGCCAATTAGTAGTAACTATGAGCTTAATTTTGATAAATTTTGTTAATATTCTATTTGATTAATTTGAGAAAATAAAGTGTGGAGCACTTTACTAATGAATATGAATTTAGCTTTACACCTCAAAAATGATTAACAAGATCCATGGATGATAGTTTTGACCAGATCCTTTATTTTATTTGATACATCTTGACTGATGCATAGAATCGATATATGAAGGATAATATGTATGAGAAATTATAATGTCTAAATTATATATACCATATTCTTTCAAAAGTTGCAATATTACTCTTGACCTTTCATTAACATTTCGAAACTATCCTTACTATAGAAATACTTTCGAATTTCGAATGGAAATGGGGGCTTAGAAAGGTGTGGCAATGACCTAGAACAATTTGGTGATTCAAATTTTCATTTTAGGTCACCCGGGTTCAAACGCTTGTGAAAGATGAAGTGTAATGTTGTAACTTTTGAAAGAATAAGTGTATTTTTAAAAGAAAAATTTATGTGGTAATTTTATATTTCATGGTTATAATATCTCGAACACAATTAGTCTTGTAGTATCAAACAACTACTTTGTTCAATTTCAGATAGATATTCTTTATAAACTTCCTATTATTGACGACATATTTCTTTCATATTCTTACAAATGCATATGTTAATATAGACTCCCAAACATTCGAATTGGCACGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATCCTGGAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACACCAAACTTCAGCTATTCAGGTACTTGAGCCAATTTATAATTAATATGATTCGTTATTTCAAATATTATTTTGGTTCATGTACTTTTAGCTTGGATTCATTTGGTACATGTATGTTTTAAATGTTTATTTTGGTCCATGTACTTTCAACCTTAGTTCATTTTGGTCCTATACTTTTAAAAAGTGATCATTTTGGTCCCTTCATTTTCATTTTTATCTTTTTTTTTTTTAATTCAGAATTTGGCATTACACTTTGTAAATATGTATTAAAAGAGTTTCTTTAAATTTCTTAAAGTATAGCCATAAATTCATAAATTTGTATTAAAGAGTTTCAATTTTGTATAAATTTTTTTAAAACTTTGAAATGGAATCAAAATGGTCACTATTCAAAAGTACATCGACTAAAATAAGCCTTTTGAGTGCACATGGACCAGAATGAACAAATGAAAGTAAATATTTTAAAAGTAAACCAAAACTAAAGGTAAAAGGACCAAATTTGTACTTAAACCTAGTATTAATTACTCCACTCCATCTTTCTTATTTTATTCATATGATATGCAGTTGGCAATGCATCCCTTAAAGTTGCTTGTTCCCATAGGCTATCCGCACATTTCTCCAATATTCAAGATGGAAGCTTGGTAAGAGGATTTATCCTTTCTCCTATTTAATAGCAAGAATTCTCTTATGATACCATCATATGATTTGAGCTTTTATACTTGAGGTTCTTATTTCCCTTTTGCAACATCCAATCCTTCATTTGATTTTGGCTTTGCTATTCATGCATTGTGGTCGAGTTGGGTCACTCGTAACAGATATTATTAGATGAGCCTTTTTTGGTTGATTTTGATTTTCTAGTTTATTCGATTCACATTTTTTTGCAACCTTATTAATTTATGGGAACCACAATGAATCAAAAGGGCGCGCACACAAGAATGTGGTATACATCTAAAGATCTTGAATTTGAGTTGGACAACTCTGTCGATTAGGAGAGAAAGGCTTAACTAGTTTGGTCGAGGGTATATATCTCATTTAACTGATTGAGTTATGCTCATATTGACGTTCATGAAGTGTTTTCAATTGGTATTTAGCTCAAATGCATTGATGATTCGGACTTTTCGGCTATAAAAGTTTATAAGCCCACTAAGACCACTTAATATGTCCATTGGAAAACACTTCTAATAGTTGTACGAGAACTTTACTCTGAATTCATAGGTTATTCGACTTTCTATTCTCAAGAATCTCAAACCATTACACATTTCATCCTTTAACTTATAAATTCACTTCTTTTTTTCAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATTAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAAAACGGCGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAA

mRNA sequence

ATGGAGAAGCAGGAAGGATCAAGTACCAGAATTGATTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTATCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTATTGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAATTGAGACTCCCAAACATTCGAATTGGCACGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATCCTGGAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACACCAAACTTCAGCTATTCAGAATTTGGCATTACACTTTGTAAATATTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATTAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAAAACGGCGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAA

Coding sequence (CDS)

ATGGAGAAGCAGGAAGGATCAAGTACCAGAATTGATTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTATCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTATTGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAATTGAGACTCCCAAACATTCGAATTGGCACGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATCCTGGAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACACCAAACTTCAGCTATTCAGAATTTGGCATTACACTTTGTAAATATTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATTAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAAAACGGCGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAA

Protein sequence

MEKQEGSSTRIDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQNLALHFVNIPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS

Homology

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BLAST of Carg02024 vs. NCBI nr
Match: XP_022956517.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >XP_022956518.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata])

HSP 1 Score: 608.6 bits (1568), Expect = 1.2e-170
Identity = 309/334 (92.51%), Postives = 313/334 (93.71%), Query Frame = 0


Query: 11  IDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL 70
           +DFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL
Sbjct: 86  VDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL 145

Query: 71  IKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSR 130
           IKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSR
Sbjct: 146 IKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSR 205

Query: 131 FGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRR 190
           FGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRR
Sbjct: 206 FGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRR 265

Query: 191 INEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQNLAL 250
           INEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQ LA+
Sbjct: 266 INEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQ-LAM 325

Query: 251 HFVNI------------------PTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDM 310
           H + +                  PTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDM
Sbjct: 326 HPLKLLVPIGYPHISPIFKMEACPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDM 385

Query: 311 CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS 327
           CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS
Sbjct: 386 CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS 418

[Close]

BLAST of Carg02024 vs. NCBI nr
Match: XP_022984739.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita maxima])

HSP 1 Score: 599.0 bits (1543), Expect = 9.8e-168
Identity = 304/334 (91.02%), Postives = 311/334 (93.11%), Query Frame = 0


Query: 11  IDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL 70
           +DFEKALE+FLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL
Sbjct: 86  VDFEKALEDFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL 145

Query: 71  IKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSR 130
           IKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSR
Sbjct: 146 IKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSR 205

Query: 131 FGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRR 190
           FGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRR
Sbjct: 206 FGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRR 265

Query: 191 INEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQNLAL 250
           INEQLIYTEVSICDKDMVTTDP ATIG+SEGILVECSFGAVCTLSHLISHQTSAIQ LA+
Sbjct: 266 INEQLIYTEVSICDKDMVTTDPAATIGKSEGILVECSFGAVCTLSHLISHQTSAIQ-LAM 325

Query: 251 HFVNI------------------PTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDM 310
             + +                  PTGCEDLSLQAREKFNMSVRSLAHPFSISE+ARTWDM
Sbjct: 326 QPLKLLVPIGYPHISPIFKMEACPTGCEDLSLQAREKFNMSVRSLAHPFSISEMARTWDM 385

Query: 311 CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS 327
           CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS
Sbjct: 386 CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS 418

[Close]

BLAST of Carg02024 vs. NCBI nr
Match: XP_023526658.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo] >XP_023526666.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 592.4 bits (1526), Expect = 9.2e-166
Identity = 302/334 (90.42%), Postives = 307/334 (91.92%), Query Frame = 0


Query: 11  IDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL 70
           +DFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL
Sbjct: 86  VDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRL 145

Query: 71  IKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSR 130
           IKMVNVMSPKALSASVSDIDSIVCMTDRV SSAPLNKSKGAVGMDLAGTVASRLRRKCSR
Sbjct: 146 IKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRKCSR 205

Query: 131 FGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRR 190
           FGGT GSRRTRHYRCLMDCEGFDLSSLFTQRSRI ETPKHSNWHGFSLPVKQSLLEEIRR
Sbjct: 206 FGGTNGSRRTRHYRCLMDCEGFDLSSLFTQRSRITETPKHSNWHGFSLPVKQSLLEEIRR 265

Query: 191 INEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQNLAL 250
           INEQLIYTEVSICDKDMVTTD  ATIGRSEGILVECSFGAVCTLSHLIS QTSA+Q LA+
Sbjct: 266 INEQLIYTEVSICDKDMVTTDSAATIGRSEGILVECSFGAVCTLSHLISPQTSAVQ-LAM 325

Query: 251 HFVNI------------------PTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDM 310
           H + +                  PTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDM
Sbjct: 326 HPLKLLVPIGYPHISPIFKMEACPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDM 385

Query: 311 CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS 327
           CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS
Sbjct: 386 CARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS 418

[Close]

BLAST of Carg02024 vs. NCBI nr
Match: XP_022138947.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Momordica charantia])

HSP 1 Score: 412.9 bits (1060), Expect = 1.0e-111
Identity = 222/348 (63.79%), Postives = 259/348 (74.43%), Query Frame = 0


Query: 14  EKALENFLYP-------PIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTP 73
           E A ++FL+         IVNDA Q EK FI+STPGMSPS+LLEEV++SDRDND C VTP
Sbjct: 15  EDAWDDFLFSQRGKVSHQIVNDAVQEEKPFIISTPGMSPSALLEEVSESDRDNDICSVTP 74

Query: 74  LQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRR 133
           LQRL+KMVNVMSPKALSAS+SDIDSIVCMTDRV+SSAPLNKSK  +  DL GTV SRLR+
Sbjct: 75  LQRLLKMVNVMSPKALSASISDIDSIVCMTDRVASSAPLNKSKAEISEDLVGTVTSRLRK 134

Query: 134 KCSRFGGTIGSRRTRHYR---------CLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFS 193
           +CS FGG+ GSRRTRH R              E +DL+S FT+RSR IETP+HS+W GFS
Sbjct: 135 RCSIFGGSTGSRRTRHCRNTRMXXXXXXXXXXESYDLNSTFTERSR-IETPEHSHWRGFS 194

Query: 194 LPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHL 253
           LP KQ LLEEIR+INEQLI T VS+CDKDM+TTD  AT  RSEGI+VECSF A+   S+ 
Sbjct: 195 LPFKQYLLEEIRKINEQLIDTVVSVCDKDMITTDNAATNDRSEGIIVECSFAAMRISSNK 254

Query: 254 ISHQTSAIQNLALHFVNI---------------------PTGCEDLSLQAREKFNMSVRS 313
           IS Q SA+Q L +H + +                     PT CE+LSL+ REKFNM VRS
Sbjct: 255 ISQQASALQ-LTVHPLKLLVPKGYPHCSPIFNKLKLEACPTDCEELSLKTREKFNMCVRS 314

Query: 314 LAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 325
           L HPFSISEVARTWD CAR+V+SE+A++NGGGSF+SKYGSWEDCLH A
Sbjct: 315 LPHPFSISEVARTWDACAREVVSEFAQRNGGGSFTSKYGSWEDCLHHA 360

[Close]

BLAST of Carg02024 vs. NCBI nr
Match: XP_022138948.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Momordica charantia])

HSP 1 Score: 304.7 bits (779), Expect = 3.8e-79
Identity = 167/254 (65.75%), Postives = 194/254 (76.38%), Query Frame = 0


Query: 14  EKALENFLYP-------PIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTP 73
           E A ++FL+         IVNDA Q EK FI+STPGMSPS+LLEEV++SDRDND C VTP
Sbjct: 15  EDAWDDFLFSQRGKVSHQIVNDAVQEEKPFIISTPGMSPSALLEEVSESDRDNDICSVTP 74

Query: 74  LQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRR 133
           LQRL+KMVNVMSPKALSAS+SDIDSIVCMTDRV+SSAPLNKSK  +  DL GTV SRLR+
Sbjct: 75  LQRLLKMVNVMSPKALSASISDIDSIVCMTDRVASSAPLNKSKAEISEDLVGTVTSRLRK 134

Query: 134 KCSRFGGTIGSRRTRHYR---------CLMDCEGFDLSSLFTQRSRIIETPKHSNWHGFS 193
           +CS FGG+ GSRRTRH R              E +DL+S FT+RSR IETP+HS+W GFS
Sbjct: 135 RCSIFGGSTGSRRTRHCRNTRMXXXXXXXXXXESYDLNSTFTERSR-IETPEHSHWRGFS 194

Query: 194 LPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHL 252
           LP KQ LLEEIR+INEQLI T VS+CDKDM+TTD  AT  RSEGI+VECSF A+   S+ 
Sbjct: 195 LPFKQYLLEEIRKINEQLIDTVVSVCDKDMITTDNAATNDRSEGIIVECSFAAMRISSNK 254

[Close]

BLAST of Carg02024 vs. TAIR10
Match: AT1G15780.1 (unknown protein)

HSP 1 Score: 159.1 bits (401), Expect = 4.7e-39
Identity = 118/328 (35.98%), Postives = 169/328 (51.52%), Query Frame = 0


Query: 34   KAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPKALS 93
            ++  + TPG+S S LL+E T  D +                 P++RLI+ V  +SP+ALS
Sbjct: 1004 QSLAIGTPGISASPLLQEFTSPDGNILNSSTITSGKPSATELPIERLIRAVKSISPQALS 1063

Query: 94   ASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRH 153
            ++VSDI S+V M DR++ SAP N S+ +VG DL      RL+ R      G + +++ + 
Sbjct: 1064 SAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKR 1123

Query: 154  YRCLMDCE--------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQ 213
            +   M           G +        +  +E+   S+        + +LLEEI+ IN++
Sbjct: 1124 HTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKKARTETEHALLEEIKEINQR 1183

Query: 214  LIYTEVSICDKDMVTTDPG----ATIGRSEGILVECSFGAV----CTLSHLISHQTSAIQ 273
            LI T V I D D    DP     ++IG  EG  V  SF AV       +HL S Q S IQ
Sbjct: 1184 LIDTVVEISD-DEDAADPSEVAISSIG-CEGTTVRFSFIAVSLSPALKAHLSSTQMSPIQ 1243

Query: 274  NLALHF-VNIPTGC---------------EDLSLQAREKFNMSVRSLAHPFSISEVARTW 319
             L L    + P G                EDLS +A  +FN+ +RSL+ P S+ ++A+TW
Sbjct: 1244 PLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKTW 1303

[Close]

BLAST of Carg02024 vs. TAIR10
Match: AT2G10440.1 (unknown protein)

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-24
Identity = 84/293 (28.67%), Postives = 130/293 (44.37%), Query Frame = 0


Query: 66  PLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR 125
           P+ RLIK     SPK+L+ SVS+I S++ M D +  S P   S G     L   ++ R R
Sbjct: 659 PIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFP---SSGGSRAGLGEDLSERTR 718

Query: 126 RKCSRFGGTIGSRRTRHYRCL---MDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQ 185
              +     +  R  R    +   M  +      L +  S ++ T   S     ++    
Sbjct: 719 NFTTHEETNLSKRMKRSINIVPPDMSSQIDSYEQLSSLESEVVSTTS-SGLKVNNIAPGY 778

Query: 186 SLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQT 245
           +LL+EI+  N +L+ T V ICD+D            S G +V C++  V   +    H  
Sbjct: 779 ALLQEIKETNGRLVETVVEICDED------------SLGTIVTCTYAPVALSATFKDHYK 838

Query: 246 SA--------------IQNLALHF--------------VNIPTGC---EDLSLQAREKFN 305
           S               IQ L L F              ++  T     EDLS + R +F+
Sbjct: 839 SGKIIFYVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEEISFDTSVHKYEDLSARTRSRFS 898

Query: 306 MSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 325
           +S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE  L  +
Sbjct: 899 LSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWETVLRAS 935

[Close]

BLAST of Carg02024 vs. TAIR10
Match: AT1G15770.1 (unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 38  VSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPKALSASVS 97
           + TPG+S S LL E+T  D +                 P++RLI+ +  +SP+ALS++V 
Sbjct: 154 IGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSISPQALSSAVC 213

Query: 98  DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRK 128
           DI S+V M DR++ S P   S+ + G+DL       L+ +
Sbjct: 214 DIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

[Close]

BLAST of Carg02024 vs. Swiss-Prot
Match: sp|F4I171|MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.5e-38
Identity = 118/328 (35.98%), Postives = 169/328 (51.52%), Query Frame = 0


Query: 34   KAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPKALS 93
            ++  + TPG+S S LL+E T  D +                 P++RLI+ V  +SP+ALS
Sbjct: 1004 QSLAIGTPGISASPLLQEFTSPDGNILNSSTITSGKPSATELPIERLIRAVKSISPQALS 1063

Query: 94   ASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRH 153
            ++VSDI S+V M DR++ SAP N S+ +VG DL      RL+ R      G + +++ + 
Sbjct: 1064 SAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKR 1123

Query: 154  YRCLMDCE--------GFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQ 213
            +   M           G +        +  +E+   S+        + +LLEEI+ IN++
Sbjct: 1124 HTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKKARTETEHALLEEIKEINQR 1183

Query: 214  LIYTEVSICDKDMVTTDPG----ATIGRSEGILVECSFGAV----CTLSHLISHQTSAIQ 273
            LI T V I D D    DP     ++IG  EG  V  SF AV       +HL S Q S IQ
Sbjct: 1184 LIDTVVEISD-DEDAADPSEVAISSIG-CEGTTVRFSFIAVSLSPALKAHLSSTQMSPIQ 1243

Query: 274  NLALHF-VNIPTGC---------------EDLSLQAREKFNMSVRSLAHPFSISEVARTW 319
             L L    + P G                EDLS +A  +FN+ +RSL+ P S+ ++A+TW
Sbjct: 1244 PLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKTW 1303

[Close]

BLAST of Carg02024 vs. Swiss-Prot
Match: sp|Q9SHV7|MD15C_ARATH (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana OX=3702 GN=MED15C PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-22
Identity = 84/293 (28.67%), Postives = 130/293 (44.37%), Query Frame = 0


Query: 66  PLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR 125
           P+ RLIK     SPK+L+ SVS+I S++ M D +  S P   S G     L   ++ R R
Sbjct: 659 PIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFP---SSGGSRAGLGEDLSERTR 718

Query: 126 RKCSRFGGTIGSRRTRHYRCL---MDCEGFDLSSLFTQRSRIIETPKHSNWHGFSLPVKQ 185
              +     +  R  R    +   M  +      L +  S ++ T   S     ++    
Sbjct: 719 NFTTHEETNLSKRMKRSINIVPPDMSSQIDSYEQLSSLESEVVSTTS-SGLKVNNIAPGY 778

Query: 186 SLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHLISHQT 245
           +LL+EI+  N +L+ T V ICD+D            S G +V C++  V   +    H  
Sbjct: 779 ALLQEIKETNGRLVETVVEICDED------------SLGTIVTCTYAPVALSATFKDHYK 838

Query: 246 SA--------------IQNLALHF--------------VNIPTGC---EDLSLQAREKFN 305
           S               IQ L L F              ++  T     EDLS + R +F+
Sbjct: 839 SGKIIFYVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEEISFDTSVHKYEDLSARTRSRFS 898

Query: 306 MSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTA 325
           +S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE  L  +
Sbjct: 899 LSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWETVLRAS 935

[Close]

BLAST of Carg02024 vs. Swiss-Prot
Match: sp|F4I169|MD15B_ARATH (Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis thaliana OX=3702 GN=MED15B PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-07
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 38  VSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPKALSASVS 97
           + TPG+S S LL E+T  D +                 P++RLI+ +  +SP+ALS++V 
Sbjct: 154 IGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSISPQALSSAVC 213

Query: 98  DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRK 128
           DI S+V M DR++ S P   S+ + G+DL       L+ +
Sbjct: 214 DIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

[Close]

BLAST of Carg02024 vs. TrEMBL
Match: tr|A0A2C9UYW6|A0A2C9UYW6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G061900 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.0e-51
Identity = 135/323 (41.80%), Postives = 181/323 (56.04%), Query Frame = 0


Query: 38   VSTPGMSPSSLLEEVTDSDRDNDKCCVT----------PLQRLIKMVNVMSPKALSASVS 97
            + TPG+S S LL E T SD  +     T          PL+RLIK V  MSPKALSASVS
Sbjct: 1020 IGTPGISASPLLAECTGSDGAHGNALTTASGKSSVTEQPLERLIKAVKSMSPKALSASVS 1079

Query: 98   DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRHYRCL 157
            DI S+V M DR++ SAP N S+ AVG DL      R++ R C    G  G+R+ R Y   
Sbjct: 1080 DIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTNCRIQARNCITQDGVNGTRKMRRYTSA 1139

Query: 158  MDCEGFDLSSLFTQRSRIIETPKHSNWHGFS--------LPVKQSLLEEIRRINEQLIYT 217
            M       +S  +   + +  P+ S+    +        +    +LLEEIR IN++LI T
Sbjct: 1140 MPLNVVSSASSISDSFKQLNGPETSDLESTATSTVKKPRIEANHALLEEIREINQRLIDT 1199

Query: 218  EVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHL----ISHQTSAIQNLALHF-- 277
             V I ++D+  T  G+  G  EG +V+CSF AV    +L     S Q S IQ L L    
Sbjct: 1200 VVDISEEDVDPTAAGSAAGGGEGTIVKCSFSAVALSPNLKSQYASSQMSPIQPLRLFVPT 1259

Query: 278  --------------VNIPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVI 322
                          V I    EDLS++A+ +F++S+RSL+ P S+ E+ARTWD+CAR VI
Sbjct: 1260 NYPNCSPILLDVLPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARAVI 1319

[Close]

BLAST of Carg02024 vs. TrEMBL
Match: tr|B9SWU1|B9SWU1_RICCO (Transcription cofactor, putative OS=Ricinus communis OX=3988 GN=RCOM_0011080 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.8e-51
Identity = 143/326 (43.87%), Postives = 184/326 (56.44%), Query Frame = 0


Query: 38   VSTPGMSPSSLLEEVTDSD--------RDNDKCCVT--PLQRLIKMVNVMSPKALSASVS 97
            + TPG+S S LL E T SD          + K  VT  PL+RLIK V  MSPKALSASVS
Sbjct: 1057 IGTPGISASPLLAEFTGSDVGLANTLTTASGKSTVTEQPLERLIKAVKSMSPKALSASVS 1116

Query: 98   DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRHYRCL 157
            DI S+V M DR++SSAP N S+ AVG DL      RL+ R      G  G+R+ R Y   
Sbjct: 1117 DIGSVVSMIDRIASSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGMSGTRKMRRYTSA 1176

Query: 158  MD----CEGFDLSSLFTQ----RSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYT 217
            M          +S  F Q     +  +E+   S+     L    +LLEEIR IN++LI T
Sbjct: 1177 MPLNVVSSASSISDSFKQFNGAETSELESTATSSVKRPRLEANHALLEEIREINQRLIDT 1236

Query: 218  EVSICDKDMVTTDPGATIGRSEGILVECSFGAVCTLSHL----ISHQTSAIQNLALHF-- 277
             V I ++D+  T   AT G  EG +V+CSF AV    +L     S Q S IQ L L    
Sbjct: 1237 VVDISEEDVDPTAGAATAGGGEGTIVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPT 1296

Query: 278  --------------VNIPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVI 325
                          V +    EDLS++A+ +FN+S+RSL+ P S+ E+ARTWD+CAR VI
Sbjct: 1297 NYPNCSPILLDKLPVEVSKEYEDLSVKAKSRFNISLRSLSQPMSLGEIARTWDVCARAVI 1356

[Close]

BLAST of Carg02024 vs. TrEMBL
Match: tr|A0A2P2MQK0|A0A2P2MQK0_RHIMU (Transcription cofactor OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.7e-49
Identity = 132/327 (40.37%), Postives = 181/327 (55.35%), Query Frame = 0


Query: 38   VSTPGMSPSSLLEEVTDSDRDNDKCCVT----------PLQRLIKMVNVMSPKALSASVS 97
            + TPG+S S LL E T +D  +     T          PL+RL+K V  MSPKA  A++S
Sbjct: 1010 IGTPGISASPLLAEFTGTDGAHGTALTTVSSKSSVTEQPLERLMKAVKSMSPKARDAAIS 1069

Query: 98   DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRHYRCL 157
            DI S+VCMTDR++ SAP N S+ AVG DL      RL+ R      G  G+R+ R Y   
Sbjct: 1070 DISSVVCMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMSGTRKMRRYTSA 1129

Query: 158  MDCEGFDLSSLFTQRSRIIETPKHSNWHGFS--------LPVKQSLLEEIRRINEQLIYT 217
            M       +   +   + +  P+ S+    +        + V Q+LLEEIR IN++LI T
Sbjct: 1130 MPLNVLSSAGSMSDGYKQLNGPEASDLESTATSGIKRPRIEVNQALLEEIREINQRLIDT 1189

Query: 218  EVSICDKDM-VTTDPGATIGRSEGILVECSFGAVCTLSHL----ISHQTSAIQNLALHF- 277
             + I D+D+  +T   A     EG +V+CSF AV    +L     S Q S IQ L L   
Sbjct: 1190 VIDISDEDVDPSTAAAAAAEGGEGTIVKCSFIAVALSPNLKSQYASAQMSPIQPLRLLVP 1249

Query: 278  ---------------VNIPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDV 325
                           V +    EDLS++A+ +F++S+RSL+ P S+SE+ RTWD+CAR V
Sbjct: 1250 TNYPNCSPILLDKLPVEVNKDYEDLSVKAKSRFSVSLRSLSQPMSLSEIVRTWDVCARAV 1309

[Close]

BLAST of Carg02024 vs. TrEMBL
Match: tr|A0A2P2MQI7|A0A2P2MQI7_RHIMU (Transcription cofactor OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.7e-49
Identity = 132/327 (40.37%), Postives = 181/327 (55.35%), Query Frame = 0


Query: 38   VSTPGMSPSSLLEEVTDSDRDNDKCCVT----------PLQRLIKMVNVMSPKALSASVS 97
            + TPG+S S LL E T +D  +     T          PL+RL+K V  MSPKA  A++S
Sbjct: 972  IGTPGISASPLLAEFTGTDGAHGTALTTVSSKSSVTEQPLERLMKAVKSMSPKARDAAIS 1031

Query: 98   DIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTIGSRRTRHYRCL 157
            DI S+VCMTDR++ SAP N S+ AVG DL      RL+ R      G  G+R+ R Y   
Sbjct: 1032 DISSVVCMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMSGTRKMRRYTSA 1091

Query: 158  MDCEGFDLSSLFTQRSRIIETPKHSNWHGFS--------LPVKQSLLEEIRRINEQLIYT 217
            M       +   +   + +  P+ S+    +        + V Q+LLEEIR IN++LI T
Sbjct: 1092 MPLNVLSSAGSMSDGYKQLNGPEASDLESTATSGIKRPRIEVNQALLEEIREINQRLIDT 1151

Query: 218  EVSICDKDM-VTTDPGATIGRSEGILVECSFGAVCTLSHL----ISHQTSAIQNLALHF- 277
             + I D+D+  +T   A     EG +V+CSF AV    +L     S Q S IQ L L   
Sbjct: 1152 VIDISDEDVDPSTAAAAAAEGGEGTIVKCSFIAVALSPNLKSQYASAQMSPIQPLRLLVP 1211

Query: 278  ---------------VNIPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDV 325
                           V +    EDLS++A+ +F++S+RSL+ P S+SE+ RTWD+CAR V
Sbjct: 1212 TNYPNCSPILLDKLPVEVNKDYEDLSVKAKSRFSVSLRSLSQPMSLSEIVRTWDVCARAV 1271

[Close]

BLAST of Carg02024 vs. TrEMBL
Match: tr|A0A2R6Q1D0|A0A2R6Q1D0_ACTCH (Mediator of RNA polymerase II transcription subunit 15a like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc24175 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.7e-49
Identity = 143/346 (41.33%), Postives = 190/346 (54.91%), Query Frame = 0


Query: 24   PIVNDAAQAEKAFIVSTPGMSPSSLLEEVTDSDRD--------NDKCCVT--PLQRLIKM 83
            P    A    ++  + TPG+S S LL E T  D +        + K  VT  PL+RLIK+
Sbjct: 1014 PQTAGAVTPVQSLAIGTPGISASPLLAEFTSPDGNHGNASTVVSGKSSVTEQPLERLIKV 1073

Query: 84   VNVMSPKALSASVSDIDSIVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFG 143
            V  MSPK+LSASVSDI S+V M DR++ SAP N S+ AVG DL      RL+ R  +   
Sbjct: 1074 VKSMSPKSLSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNIATQD 1133

Query: 144  GTIGSRRTRHYRCLMDCE----------------GFDLSSLFTQRSRIIETPKHSNWHGF 203
              IG+R+ R Y   +                   G + S L +  +  I+ P+       
Sbjct: 1134 TNIGTRKMRRYTSAIPLNVASSAGSGNDSFKHLTGSEASDLESTATSSIKRPR------- 1193

Query: 204  SLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGA-TIGRSEGILVECSFGAVCTLS 263
             +    +LLEEIR IN +LI T VSI ++D+  T   A T    EG +V+CSF AV    
Sbjct: 1194 -IEANHALLEEIRGINLRLIDTVVSISEEDVDPTAAAAITTEGGEGTVVQCSFSAVALSP 1253

Query: 264  HLISH----QTSAIQNLALHFVN------------IPTGC----EDLSLQAREKFNMSVR 322
            +L SH    Q S+IQ L L   N             PT      EDLS++A+ +F++S+R
Sbjct: 1254 NLKSHYASTQMSSIQPLRLFVPNSYPNSSPALLDKFPTEVSKEYEDLSVKAKSRFSISLR 1313

The following BLAST results are available for this feature:

BLAST of Carg02024 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956517.1	1.2e-170	92.51	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata...	[more]
XP_022984739.1	9.8e-168	91.02	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita maxima]	[more]
XP_023526658.1	9.2e-166	90.42	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub...	[more]
XP_022138947.1	1.0e-111	63.79	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Momordi...	[more]
XP_022138948.1	3.8e-79	65.75	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Momordi...	[more]

BLAST of Carg02024 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15780.1	4.7e-39	35.98	unknown protein	[more]
AT2G10440.1	9.5e-24	28.67	unknown protein	[more]
AT1G15770.1	1.1e-08	34.00	unknown protein	[more]

BLAST of Carg02024 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4I171\|MD15A_ARATH	8.5e-38	35.98	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]
sp\|Q9SHV7\|MD15C_ARATH	1.7e-22	28.67	Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ...	[more]
sp\|F4I169\|MD15B_ARATH	2.0e-07	34.00	Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis ...	[more]

BLAST of Carg02024 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2C9UYW6\|A0A2C9UYW6_MANES	1.0e-51	41.80	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G061900 PE=4 SV=...	[more]
tr\|B9SWU1\|B9SWU1_RICCO	3.8e-51	43.87	Transcription cofactor, putative OS=Ricinus communis OX=3988 GN=RCOM_0011080 PE=...	[more]
tr\|A0A2P2MQK0\|A0A2P2MQK0_RHIMU	4.7e-49	40.37	Transcription cofactor OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A2P2MQI7\|A0A2P2MQI7_RHIMU	4.7e-49	40.37	Transcription cofactor OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A2R6Q1D0\|A0A2R6Q1D0_ACTCH	4.7e-49	41.33	Mediator of RNA polymerase II transcription subunit 15a like OS=Actinidia chinen...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02024-RA	Carg02024-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33137	FAMILY NOT NAMED	coord: 29..322

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02024	Cla022902	Watermelon (97103) v1	carwmB0845
Carg02024	ClCG11G012980	Watermelon (Charleston Gray)	carwcgB0810
Carg02024	CmaCh04G012930	Cucurbita maxima (Rimu)	carcmaB1170
Carg02024	CmoCh04G013610	Cucurbita moschata (Rifu)	carcmoB1138
Carg02024	Lsi04G007510	Bottle gourd (USVL1VR-Ls)	carlsiB765
Carg02024	Cp4.1LG01g09910	Cucurbita pepo (Zucchini)	carcpeB1177
Carg02024	Cla97C11G218880	Watermelon (97103) v2	carwmbB0873
Carg02024	Bhi07G000961	Wax gourd	carwgoB0984

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02024	Melon (DHL92) v3.6.1	carmedB0844
Carg02024	Silver-seed gourd	carcarB591
Carg02024	Silver-seed gourd	carcarB592
Carg02024	Cucumber (Gy14) v2	carcgybB0834
Carg02024	Cucumber (Gy14) v1	carcgyB0962
Carg02024	Cucurbita maxima (Rimu)	carcmaB1166
Carg02024	Cucurbita maxima (Rimu)	carcmaB1167
Carg02024	Cucurbita moschata (Rifu)	carcmoB1134
Carg02024	Cucurbita moschata (Rifu)	carcmoB1135
Carg02024	Cucurbita pepo (Zucchini)	carcpeB1169
Carg02024	Cucurbita pepo (Zucchini)	carcpeB1172
Carg02024	Wild cucumber (PI 183967)	carcpiB0881
Carg02024	Cucumber (Chinese Long) v2	carcuB0861
Carg02024	Cucumber (Chinese Long) v3	carcucB0885
Carg02024	Melon (DHL92) v3.5.1	carmeB0832