Cp4.1LG01g04330 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g04330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG01 : 1353506 .. 1358571 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCGTGCTAAAGACGAAAAAGTTCTAATTTGTATGCGTTTTGGGGAAGAATGCTTGCAACGCTCATTTGAGATGTTATAGTACAACGTATAGATGCTTGTGTATGTACGTGAATTAGCTTGATTAACTATAGTTTGAGCGTCTAAATGTTAGTGAAGTGTCTCAATGTTGAAACCTTGAGAAATTTTGACTTGGACACCGTCTTCTCTTTCACTTGGTGATGATATTTGGTGATAAGGATGAAGCCCCTATTAATTATAGACCTTCATTCCGAGTTGTGGAACTAAGTTCTTTCGTTTTAAGTGAGCTAGACAAAAATACCAGATTAACCCAATATTATTGAAAATACCGTTAAAGCTACGAGCTAATAAACCAATTTGAACACTGCTCTACTGGAATTAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGATTTAAGAAGCTAGAGCTTAGTGGAAGGATGAATTACTCATACTATTATTGATATTTTTATTTTGAAAGTTTGAGATATTTTTGAATGTTTTTATAATTAATTATATATATATATATAAATAGTTTAACCTAATTGATTCATGGAGGAAGGAGGTGAAAGATGAATTTGATCCCATATAAATTATTTGAAATTATAATTACCAAACCAAAATTAGGGGAACAAAAAAGAATGTTAATTCGAAGACGAATTGGGATTGAATTGTTTTTCAGTGGGTTACAAGAAACAGAACAGTTTTCTTTCGAATCGTAAGCACGATGGCGATTCTCCTCAGTTTCAACAATTATGGGGTCCATCTTCGCCGGCCGCCGCCATATCCCCTCCGTCTCTCAAGCTGCTGCAATCGTACAGCTTCGTCGGTACTTGCTTCTCCGGAGAACTTCATCAGCAGGAAGATAGGGATTTGACGGAGCTGGCCTTTGCAGCTCCTCGGACTTCCAGCCATGTCTTTGCATTCATTTTCGCTCTCTCTCTCCTTGTCGTCGCTATCTACAGCTCTCTCAAAGGCGGCGGCAACCTCACAGGAGGCTTTATTGAGGAGGTATTTCACTTTCAGTTTCTATTTTCAAGGCCATTTTCTGTGATTGGAAGTATCAGCGTTTGTGGTTTGAATTCGCTCGCCTAGCTTTGGCTCGTGTTTAGGTTATAGAGAAAGGGTAATATATATTGAATATTAGTTATCTTATTAGCTTCGTTGGATTGAGATTTTCAGCTAACTTTATACCATTTTAGGTTAGAAATCAGCTGTATATTTAGTATTTTTAGTAGATGACCATCTTGTGATTTCATATATGACTTCGAAACACTGTTTTGGTGAGATTCCACGTTGATTGGGGAGGAGAACGAAACATTTCTTTTATAAGGATGTGGAAACCTCTCCATGCGTTTTAAAAACTTTGAGGGTAAGCCCAAATAGGACAATATCTACTAGTGGTGAGCTTGAGCCGTTACAAATGGTATTAGAGCCAAATACCGGACGGTGTGTCAGCAAACACGTTGGGCCTCGAGGGGTGGATTGAGGGGTCTCACATTGATTGGAGAAGGAAACGAGTGCCAGCAAGGATGCTGGGCCTCGAAGGGGGTGGATTCTGAGATCCCACATCGATTGGGGAGGAAAACAAAACATTCTTTATCAAGGTGTTGAAACCTCTCCCTAACAGGCGTTTTAAAAACCTTGAGGAGAAGTCCGAAAGGAAAATCCTAAAGAGAACAATATTTGCTAGCGATGGGTTTGGGCCGTTACAGTTTTTCTAGAGCTATTGCCTTCAACAATAGTGGTATAGCTCGTTTGTATCAGAAATTTTTACCCTGTCATCGTGTTTCCAAACCCCACATGAATGATGACGATCTTCACTTCAACTTCAATTCCCTCGTCTTCTTTTTGCACTTCTAAGCTGTAACTCATCCTGTAGGAAGCATTTGGATCAATTATACGTCCAGTTAACTGTGTCTGGGCTATACAAGTGTGGTTTCTTGGTTATCAAATTTATCAATGCATGTTTGCATCTCAGAGATGTTAACTACGCACATAAGGTTTTTCGTGAAGTCTTAGAACCAGATATCTTGTTGTGGAATGGCATCATAAAGGGCTACACTCAGAACAATATTTTTGCTGGTGCTATCAGAATGTATAAGGATATGCAAGTGTCAGGGGTGAACCCAGATTGCTTCACATTTTTGTATGTGCTTAAAGCGTGCAGTGGAATGTCGGTCGAAGGAATAGGTAAACAGATGCATAGCCAGACGTTTAAATATGGCCTTGGATCAAATGTGTTTGTGCAGAACAGTCTTGTGTCAATGTATGCTAGATTTGGCCAAACCTCATCTGCTAGGCTCGTCTTTGATAAGTTACATAATAGAACTGTTGTTTCGTGGACGTCCATCATTTCTGGGTATGTTCAAAATGGCGATCCCGTGGACGCGTTGAGAGTTTTCAAAGATATGAGGCGAAGTACTGTGAAACTTGATTGGATTGTCCTTGTTAGTGTTGTGACAGCCTACACAGACATGGAGGATTTGGGGCAAGGAAAAGCCATTCATAGCTTAGTGACTAAATTAGGTCTAGAATTCGAACCCGACATAGTGGTCTCGCTCACTAACATGTATGCTAAATGTGGACGGGTGGAAGTTGCTAGATTTTTCTTTAATCAGATGGAAAAACCAAATTTACTTTTGTGGAATGCTATGATTTCTGGTTATGCAAAAAATGGATATGGTGAAGAAGCAATCGAGCTATTCCGTAAGATGATTTCAAAGAATATCGGGGTCGATTCTGTTACTGTGAGGTCTGCTATTCTAGCCGTTGCCCAAGCGGGGTCTCTTGAACTAGCAAGATGGTTGGATGGTTATATCTCTAAGAGTGAGTACCGAGATGATGTTTTTGTGAACACAGCCCTTATAGATATGCATGCAAAATGTGGAAGCATATGTTTTGCTCGTAGTGTTTTCGATAGAATGGTCGATAAAGACGTTGTCTTATGGAGTGCTATGATTATGGGGTATGGATTACACGGTCATGGACAAGAAGCCATCGACCTTTACAACAGAATGAAGCAATCAGGAGTTCGTCCGAACGACGTTACTTTTGTTGGCCTTCTCACAGCATGTAAAAACTCGGGTCTTGTAAAAGAGGGATGGGAGCTTTTCCACCAGATGCGAGACTACGGGATTGAACCGCATCACCAGCATTACTCTTGCGTGGTCGATCTTCTGGGACGTGCAGGCTATTTGAATCGAGCTTATGATTTTATTATGAGCATGCCCATTAAACCTGGAGTTAGTGTTTGGGGGGCACTTTTAAGTGGATGTAAGATCCATCGTCAAGTGAGGTTGGGAGAGATAGCTGCAGAACAGCTTTTCTTATTAGATCCATATAATACAGGTCATTATGTACAACTCTCAAACTTATATGCTTCTGCCCATTTATGGAACCACGTGGGGAACGTTCGATTAATGATGACACAGAAAGGATTGAACAAGGACCTCGGACATAGTTCGATTGAGATCAATGGAAATCTCGAAACGTTCCATGTTGGAGATAGATCACATCCGAGATCGAAGGAAATCTTTGAAGAACTTGATAGATTGGAGAGGAGATTAAAGGCAGCTGGTTATGTTGCTCATATGGAATCTGTTCTACATGACTTGAATGATGAGGAGATTGAGGAAACTCTTTGTAACCATAGTGAGAGGTTAGCAGTTGCTTATGGCATCATCAGTACTGCTCCTGGAACTACACTTAGAATAACGAAAAATCTCCGTGCATGCGTTAATTGTCATTCGGCGATAAAGCTAATATCGAAGCTTGTCGATAGGGAAATAATTGTTCGAGATGCGAAACGCTTTCATCATTTCAAAGATGGAGTTTGTTCGTGCGGAGATTTTTGGTGAAGCTTGGTTAGTATTCTTTACTTACATCAACCTTACACGTAATGAATTTGCTGATTTTCTTTTGGCCTATACTAACCATCATTGATTCTGATGTGAAATTGAAGAAAGTCCAATTTTTCTGTGAAATGGTAACCAATCCATTGCCCCTTCATGTGCCTTTTTTTCAATGTTCAAGTTTGATCTATTATAATTTTCTGTTTGAGATGCTTCCGAACATTCTATTTTAGTTATATTGGAGAAAAACATGTCAAACTTCTGTTATGCATTTTAATAAGAATTCTACGTGGCATCACATGAATTTATGTGATAATTTTTCTTGAAGTTAATGATTATAAATCAATAAAGATGGTTGAAGTTAATTGATTCACTCGCGAAGTTTAGGATTTAGAACGATAGAACTCTGTGGTGATTTAGAACGATAGAACTCTTAAAGTTTAGGATTTAGATTGATAGAACTCTGTGGTGGTGCCTAACGGCGCCCTAACCTAGATCTCAAAAAGGGCCCTAACCTAGATCCCACAAAGGGCCCTAACCTAGATCCCACAAAGGGTTTTGGTCAATTAAGACAACAGACCAGTGGTTATGGAAGTTGAAATTTGCTAAAAAGTGTGTAACAACTCACCTACCGAATCAACTAGCTCAAAAAATGGATGGTCTCGCGATCTATACCCGACTCTTTGTACAAATTAGTTTATCAATCTATTGAGCCATCCAACCATCTATCTTTTGATTTTACAATAACATAAGAAGTAGTCTCTCTAAACTTTTCTTAAATTTTTGGTTTGCAAGAATTAATGTCATTATTTCTTTAAATTTAATCACAAGTTTTACAATTTACAACCTCTTAGTATTAAAAATCATCCAGCGAAATAAGTTGCAAACAACTTTTCAAGTTCTTAAAATCTTAAAAGTGGAAGGTGGTGGGATTGTCAACATTTAGCAATGGCTAATGGATACTCATTGACCAATTGAGATTGAATGGCTCACAACATGAAAGCTGGTGTTGGGTAATATGATTGAACTCTTCCAAAGATTCAAAGGGAAAATAATGGGTTTAGTTAATGATGAAGAAGATTGTGGTTTTGTGGTTAAAGGAGCTGCAACTCAAACACTGTTCACTGAAATTTCAAGTGTTCAAAACCACTATGTCCTAATCAAAGCGTAG

mRNA sequence

ATGGTGGGTTACAAGAAACAGAACAGTTTTCTTTCGAATCGTAAGCACGATGGCGATTCTCCTCAGTTTCAACAATTATGGGGTCCATCTTCGCCGGCCGCCGCCATATCCCCTCCGTCTCTCAAGCTGCTGCAATCGTACAGCTTCGTCGGTACTTGCTTCTCCGGAGAACTTCATCAGCAGGAAGATAGGGATTTGACGGAGCTGGCCTTTGCAGCTCCTCGGACTTCCAGCCATGTCTTTGCATTCATTTTCGCTCTCTCTCTCCTTGTCGTCGCTATCTACAGCTCTCTCAAAGGCGGCGGCAACCTCACAGGAGGCTTTATTGAGGAGTTAACTGTGTCTGGGCTATACAAGTGTGGTTTCTTGGTTATCAAATTTATCAATGCATGTTTGCATCTCAGAGATGTTAACTACGCACATAAGGTTTTTCGTGAAGTCTTAGAACCAGATATCTTGTTGTGGAATGGCATCATAAAGGGCTACACTCAGAACAATATTTTTGCTGGTGCTATCAGAATGTATAAGGATATGCAAGTGTCAGGGGTGAACCCAGATTGCTTCACATTTTTGTATGTGCTTAAAGCGTGCAGTGGAATGTCGGTCGAAGGAATAGGTAAACAGATGCATAGCCAGACGTTTAAATATGGCCTTGGATCAAATGTGTTTGTGCAGAACAGTCTTGTGTCAATGTATGCTAGATTTGGCCAAACCTCATCTGCTAGGCTCGTCTTTGATAAGTTACATAATAGAACTGTTGTTTCGTGGACGTCCATCATTTCTGGGTATGTTCAAAATGGCGATCCCGTGGACGCGTTGAGAGTTTTCAAAGATATGAGGCGAAGAGCTGCAACTCAAACACTGTTCACTGAAATTTCAAGTGTTCAAAACCACTATGTCCTAATCAAAGCGTAG

Coding sequence (CDS)

ATGGTGGGTTACAAGAAACAGAACAGTTTTCTTTCGAATCGTAAGCACGATGGCGATTCTCCTCAGTTTCAACAATTATGGGGTCCATCTTCGCCGGCCGCCGCCATATCCCCTCCGTCTCTCAAGCTGCTGCAATCGTACAGCTTCGTCGGTACTTGCTTCTCCGGAGAACTTCATCAGCAGGAAGATAGGGATTTGACGGAGCTGGCCTTTGCAGCTCCTCGGACTTCCAGCCATGTCTTTGCATTCATTTTCGCTCTCTCTCTCCTTGTCGTCGCTATCTACAGCTCTCTCAAAGGCGGCGGCAACCTCACAGGAGGCTTTATTGAGGAGTTAACTGTGTCTGGGCTATACAAGTGTGGTTTCTTGGTTATCAAATTTATCAATGCATGTTTGCATCTCAGAGATGTTAACTACGCACATAAGGTTTTTCGTGAAGTCTTAGAACCAGATATCTTGTTGTGGAATGGCATCATAAAGGGCTACACTCAGAACAATATTTTTGCTGGTGCTATCAGAATGTATAAGGATATGCAAGTGTCAGGGGTGAACCCAGATTGCTTCACATTTTTGTATGTGCTTAAAGCGTGCAGTGGAATGTCGGTCGAAGGAATAGGTAAACAGATGCATAGCCAGACGTTTAAATATGGCCTTGGATCAAATGTGTTTGTGCAGAACAGTCTTGTGTCAATGTATGCTAGATTTGGCCAAACCTCATCTGCTAGGCTCGTCTTTGATAAGTTACATAATAGAACTGTTGTTTCGTGGACGTCCATCATTTCTGGGTATGTTCAAAATGGCGATCCCGTGGACGCGTTGAGAGTTTTCAAAGATATGAGGCGAAGAGCTGCAACTCAAACACTGTTCACTGAAATTTCAAGTGTTCAAAACCACTATGTCCTAATCAAAGCGTAG

Protein sequence

MVGYKKQNSFLSNRKHDGDSPQFQQLWGPSSPAAAISPPSLKLLQSYSFVGTCFSGELHQQEDRDLTELAFAAPRTSSHVFAFIFALSLLVVAIYSSLKGGGNLTGGFIEELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRRAATQTLFTEISSVQNHYVLIKA
Homology
[Close]
BLAST of Cp4.1LG01g04330 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.4e-41
Identity = 80/172 (46.51%), Postives = 119/172 (69.19%), Query Frame = 1 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           L V GL   GFL+ K I+A     D+ +A +VF ++  P I  WN II+GY++NN F  A
Sbjct: 44  LLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDA 103

Query: 172 IRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSM 231
           + MY +MQ++ V+PD FTF ++LKACSG+S   +G+ +H+Q F+ G  ++VFVQN L+++
Sbjct: 104 LLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIAL 163

Query: 232 YARFGQTSSARLVFD--KLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
           YA+  +  SAR VF+   L  RT+VSWT+I+S Y QNG+P++AL +F  MR+
Sbjct: 164 YAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

[Close]
BLAST of Cp4.1LG01g04330 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-28
Identity = 59/159 (37.11%), Postives = 103/159 (64.78%), Query Frame = 1 

Query: 137 VNYAHKVFREVLEP-DILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG-VNPDCFTFLYVL 196
           ++YAHKVF ++ +P ++ +WN +I+GY +      A  +Y++M+VSG V PD  T+ +++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 197 KACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVV 256
           KA + M+   +G+ +HS   + G GS ++VQNSL+ +YA  G  +SA  VFDK+  + +V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 257 SWTSIISGYVQNGDPVDALRVFKDMRRRAATQTLFTEIS 294
           +W S+I+G+ +NG P +AL ++ +M  +      FT +S
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 227

[Close]
BLAST of Cp4.1LG01g04330 vs. Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 58/166 (34.94%), Postives = 101/166 (60.84%), Query Frame = 1 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           + + GL +  F+V K ++ C  + D++YA ++F +V  P++ L+N II+ YT N+++   
Sbjct: 33  IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92

Query: 172 IRMYKDM-QVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 231
           IR+YK + + S   PD FTF ++ K+C+ +    +GKQ+H    K+G   +V  +N+L+ 
Sbjct: 93  IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152

Query: 232 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVF 277
           MY +F     A  VFD+++ R V+SW S++SGY + G    A  +F
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLF 198

[Close]
BLAST of Cp4.1LG01g04330 vs. Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 1 

Query: 123 LVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG 182
           L +K + A   L+DV  A KVF E+ E ++++ N +I+ Y  N  +   ++++  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 183 VNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSAR 242
           V PD +TF  VLKACS      IG+++H    K GL S +FV N LVSMY + G  S AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195

Query: 243 LVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDM 280
           LV D++  R VVSW S++ GY QN    DAL V ++M
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

[Close]
BLAST of Cp4.1LG01g04330 vs. Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-26
Identity = 69/189 (36.51%), Postives = 108/189 (57.14%), Query Frame = 1 

Query: 109 IEELTVS-GLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEP-DILLWNGIIKGYTQNN 168
           I  L +S GL    F   K I+   H R+   +  VFR V    ++ LWN II+ +++N 
Sbjct: 26  IHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNG 85

Query: 169 IFAGAIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQN 228
           +F  A+  Y  ++ S V+PD +TF  V+KAC+G+    +G  ++ Q    G  S++FV N
Sbjct: 86  LFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGN 145

Query: 229 SLVSMYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRRAATQ 288
           +LV MY+R G  + AR VFD++  R +VSW S+ISGY  +G   +AL ++ +++      
Sbjct: 146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205

Query: 289 TLFTEISSV 296
             FT +SSV
Sbjct: 206 DSFT-VSSV 213

[Close]
BLAST of Cp4.1LG01g04330 vs. TrEMBL
Match: A0A0A0KLB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175830 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.6e-74
Identity = 144/207 (69.57%), Postives = 166/207 (80.19%), Query Frame = 1 

Query: 85  FALSLLVVAIYSSLKGG------GNLTGGFIEE----LTVSGLYKCGFLVIKFINACLHL 144
           F+LSLL+ ++ S+L          +L    +++    L VSGL+KC FL+IKFINACLH 
Sbjct: 6   FSLSLLLSSLSSALSKSTITLHEASLRRKHLDQVYVQLIVSGLHKCRFLMIKFINACLHF 65

Query: 145 RDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSGVNPDCFTFLYVL 204
            DVNYAHK FREV EPDILLWN IIKGYTQ NI    IRMY DMQ+S V+P+CFTFLYVL
Sbjct: 66  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 125

Query: 205 KACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVV 264
           KAC G SVEGIGKQ+H QTFKYG GSNVFVQNSLVSMYA+FGQ S AR+VFDKLH+RTVV
Sbjct: 126 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 185

Query: 265 SWTSIISGYVQNGDPVDALRVFKDMRR 282
           SWTSIISGYVQNGDP++AL VFK+MR+
Sbjct: 186 SWTSIISGYVQNGDPMEALNVFKEMRQ 212

[Close]
BLAST of Cp4.1LG01g04330 vs. TrEMBL
Match: D7SQP8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0134g00210 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-48
Identity = 95/172 (55.23%), Postives = 125/172 (72.67%), Query Frame = 1 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGL + GFLV KF+NA  ++ ++ YA KVF E  EP + LWN II+GY+ +N F  
Sbjct: 93  QLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGD 152

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AI MY  MQ SGVNPD FT   VLKACSG+ V  +GK++H Q F+ G  S+VFVQN LV+
Sbjct: 153 AIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVA 212

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRR 283
           +YA+ G+   AR+VF+ L +R +VSWTS+ISGY QNG P++ALR+F  MR+R
Sbjct: 213 LYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQR 264

[Close]
BLAST of Cp4.1LG01g04330 vs. TrEMBL
Match: A0A059BTM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02828 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 6.4e-47
Identity = 84/171 (49.12%), Postives = 129/171 (75.44%), Query Frame = 1 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L V GL+K  FL+ K +N   +L ++ Y+ KVF E  +PD+ LWN II+GY+++N+F+ 
Sbjct: 95  KLLVLGLHKDSFLITKLVNWSSNLGEIRYSRKVFDEFSDPDVFLWNAIIRGYSRHNMFSD 154

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           A+ +Y +M  +GV+PD FTF Y+L+AC+G+   GIG+ +H Q +++G  S+VFVQN +V+
Sbjct: 155 AVELYSEMLGTGVSPDGFTFPYILRACTGLPALGIGRCVHGQVYRHGFESDVFVQNGVVT 214

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
           +YA+ G+   AR+VFD+L +RTVVSWTS+ISGY QNG P+++LR+F  MR+
Sbjct: 215 LYAKCGKVKHARIVFDQLRDRTVVSWTSMISGYAQNGQPMESLRIFSQMRK 265

[Close]
BLAST of Cp4.1LG01g04330 vs. TrEMBL
Match: W9S3H1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007616 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-45
Identity = 86/171 (50.29%), Postives = 122/171 (71.35%), Query Frame = 1 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L +SGL + GFL+ K +N    +    YA K+F E  +PD+ LWN I++GY+++N+F  
Sbjct: 85  QLLISGLQQNGFLITKLVNVSSDIGCNFYARKLFDEFTDPDVFLWNAIVRGYSKHNMFGD 144

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           A+ MY  MQ  GV+PD FTF +VLKACSG+     G+++H QTF+Y    + FVQNSLV+
Sbjct: 145 ALEMYSRMQAMGVSPDAFTFPHVLKACSGLQALEFGRRVHGQTFRYRSACDAFVQNSLVA 204

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
            YA+  Q   AR+VF++L +R++VSWTSIISGY QNG+P++ALR+F  MRR
Sbjct: 205 FYAKCCQIGRARMVFERLCDRSIVSWTSIISGYAQNGEPMEALRIFSQMRR 255

[Close]
BLAST of Cp4.1LG01g04330 vs. TrEMBL
Match: A0A0D2TXW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G055100 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 87/188 (46.28%), Postives = 129/188 (68.62%), Query Frame = 1 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L + G+ + GFLV K +NA ++L +++YA KVF +  +PD+ LWN II+GY++ N+FA 
Sbjct: 83  KLLLLGIQQNGFLVSKLVNAAVNLGEISYARKVFDKFPDPDVFLWNAIIRGYSKYNLFAS 142

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           A+ MY  MQV  V+PD +T  +VLKAC G+    +G+Q+H Q F+ G   +VFVQN +V+
Sbjct: 143 AVEMYSRMQVLWVSPDGYTLPHVLKACGGIPSFRMGQQVHGQIFRLGFEKDVFVQNGVVA 202

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRRAATQTLFT 290
            YA+ G+ +SA++VFD+L  R VVSWTS+ISGY QNG P++ALR F +MR          
Sbjct: 203 FYAKCGKIASAKVVFDRLEIRNVVSWTSMISGYAQNGQPIEALRFFDEMRSTGVMPDWIA 262

Query: 291 EISSVQNH 299
            +S ++ H
Sbjct: 263 LVSVIRAH 270

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-42
Identity = 80/172 (46.51%), Postives = 119/172 (69.19%), Query Frame = 1 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           L V GL   GFL+ K I+A     D+ +A +VF ++  P I  WN II+GY++NN F  A
Sbjct: 44  LLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDA 103

Query: 172 IRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSM 231
           + MY +MQ++ V+PD FTF ++LKACSG+S   +G+ +H+Q F+ G  ++VFVQN L+++
Sbjct: 104 LLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIAL 163

Query: 232 YARFGQTSSARLVFD--KLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
           YA+  +  SAR VF+   L  RT+VSWT+I+S Y QNG+P++AL +F  MR+
Sbjct: 164 YAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 8.3e-30
Identity = 59/159 (37.11%), Postives = 103/159 (64.78%), Query Frame = 1 

Query: 137 VNYAHKVFREVLEP-DILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG-VNPDCFTFLYVL 196
           ++YAHKVF ++ +P ++ +WN +I+GY +      A  +Y++M+VSG V PD  T+ +++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 197 KACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVV 256
           KA + M+   +G+ +HS   + G GS ++VQNSL+ +YA  G  +SA  VFDK+  + +V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 257 SWTSIISGYVQNGDPVDALRVFKDMRRRAATQTLFTEIS 294
           +W S+I+G+ +NG P +AL ++ +M  +      FT +S
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 227

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR10
Match: AT2G20540.1 (AT2G20540.1 mitochondrial editing factor 21)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-29
Identity = 58/166 (34.94%), Postives = 101/166 (60.84%), Query Frame = 1 

Query: 112 LTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGA 171
           + + GL +  F+V K ++ C  + D++YA ++F +V  P++ L+N II+ YT N+++   
Sbjct: 33  IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92

Query: 172 IRMYKDM-QVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 231
           IR+YK + + S   PD FTF ++ K+C+ +    +GKQ+H    K+G   +V  +N+L+ 
Sbjct: 93  IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152

Query: 232 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVF 277
           MY +F     A  VFD+++ R V+SW S++SGY + G    A  +F
Sbjct: 153 MYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLF 198

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR10
Match: AT3G49142.1 (AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 9.2e-29
Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 1 

Query: 123 LVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSG 182
           L +K + A   L+DV  A KVF E+ E ++++ N +I+ Y  N  +   ++++  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 183 VNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSAR 242
           V PD +TF  VLKACS      IG+++H    K GL S +FV N LVSMY + G  S AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195

Query: 243 LVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDM 280
           LV D++  R VVSW S++ GY QN    DAL V ++M
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

[Close]
BLAST of Cp4.1LG01g04330 vs. TAIR10
Match: AT3G03580.1 (AT3G03580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-27
Identity = 69/189 (36.51%), Postives = 108/189 (57.14%), Query Frame = 1 

Query: 109 IEELTVS-GLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEP-DILLWNGIIKGYTQNN 168
           I  L +S GL    F   K I+   H R+   +  VFR V    ++ LWN II+ +++N 
Sbjct: 26  IHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNG 85

Query: 169 IFAGAIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQN 228
           +F  A+  Y  ++ S V+PD +TF  V+KAC+G+    +G  ++ Q    G  S++FV N
Sbjct: 86  LFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGN 145

Query: 229 SLVSMYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRRAATQ 288
           +LV MY+R G  + AR VFD++  R +VSW S+ISGY  +G   +AL ++ +++      
Sbjct: 146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205

Query: 289 TLFTEISSV 296
             FT +SSV
Sbjct: 206 DSFT-VSSV 213

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: gi|778700750|ref|XP_011654911.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 5.2e-74
Identity = 144/207 (69.57%), Postives = 166/207 (80.19%), Query Frame = 1 

Query: 85  FALSLLVVAIYSSLKGG------GNLTGGFIEE----LTVSGLYKCGFLVIKFINACLHL 144
           F+LSLL+ ++ S+L          +L    +++    L VSGL+KC FL+IKFINACLH 
Sbjct: 6   FSLSLLLSSLSSALSKSTITLHEASLRRKHLDQVYVQLIVSGLHKCRFLMIKFINACLHF 65

Query: 145 RDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSGVNPDCFTFLYVL 204
            DVNYAHK FREV EPDILLWN IIKGYTQ NI    IRMY DMQ+S V+P+CFTFLYVL
Sbjct: 66  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 125

Query: 205 KACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVV 264
           KAC G SVEGIGKQ+H QTFKYG GSNVFVQNSLVSMYA+FGQ S AR+VFDKLH+RTVV
Sbjct: 126 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 185

Query: 265 SWTSIISGYVQNGDPVDALRVFKDMRR 282
           SWTSIISGYVQNGDP++AL VFK+MR+
Sbjct: 186 SWTSIISGYVQNGDPMEALNVFKEMRQ 212

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: gi|659090152|ref|XP_008445864.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 3.1e-71
Identity = 140/207 (67.63%), Postives = 165/207 (79.71%), Query Frame = 1 

Query: 85  FALSLLVVAIYSSLKGG------GNLTGGFIEE----LTVSGLYKCGFLVIKFINACLHL 144
           F+LSLL+ ++ S+L          +L    +++    L VSGL+KC +LVIKF+NACLH 
Sbjct: 6   FSLSLLLSSLSSALSKSTITSHEASLRRKHLDQVYVQLIVSGLHKCRYLVIKFVNACLHF 65

Query: 145 RDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAGAIRMYKDMQVSGVNPDCFTFLYVL 204
            DVNYAHK F EV EPDI LWN IIKGY Q NI  G IRMY DMQ+S V+P+CFTFLYVL
Sbjct: 66  GDVNYAHKAFCEVSEPDIPLWNAIIKGYAQKNIVGGPIRMYMDMQISQVHPNCFTFLYVL 125

Query: 205 KACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVSMYARFGQTSSARLVFDKLHNRTVV 264
           KAC G SVE +GKQ+H  TFKYG GSNVFVQNSLVSMYA+FGQTSSAR+VFDKLH+RTVV
Sbjct: 126 KACGGTSVE-LGKQIHGHTFKYGFGSNVFVQNSLVSMYAKFGQTSSARIVFDKLHDRTVV 185

Query: 265 SWTSIISGYVQNGDPVDALRVFKDMRR 282
           SWTSIISGYVQNGDP++AL+VFK+MR+
Sbjct: 186 SWTSIISGYVQNGDPMEALKVFKEMRQ 211

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: gi|225447423|ref|XP_002276196.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Vitis vinifera])

HSP 1 Score: 201.8 bits (512), Expect = 1.7e-48
Identity = 95/172 (55.23%), Postives = 125/172 (72.67%), Query Frame = 1 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L VSGL + GFLV KF+NA  ++ ++ YA KVF E  EP + LWN II+GY+ +N F  
Sbjct: 93  QLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGD 152

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           AI MY  MQ SGVNPD FT   VLKACSG+ V  +GK++H Q F+ G  S+VFVQN LV+
Sbjct: 153 AIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVA 212

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRRR 283
           +YA+ G+   AR+VF+ L +R +VSWTS+ISGY QNG P++ALR+F  MR+R
Sbjct: 213 LYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQR 264

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: gi|720093617|ref|XP_010246108.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Nelumbo nucifera])

HSP 1 Score: 197.6 bits (501), Expect = 3.2e-47
Identity = 87/171 (50.88%), Postives = 128/171 (74.85%), Query Frame = 1 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L V+G     +L  KF++A  +  +++YA  +F E+ EP++ LWN I++GY+QNN+F+ 
Sbjct: 88  QLIVAGFQNSNYLATKFVHASSNAGEIHYARSLFEEIPEPNVFLWNAIVRGYSQNNLFSD 147

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           A+ MY  MQV  +NPD FTF YVLKACS +S   +G ++H+Q F++G  S+VFVQN LV+
Sbjct: 148 ALEMYSRMQVERMNPDRFTFPYVLKACSSLSDLRMGFRIHAQIFRHGFESDVFVQNGLVA 207

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
           +YA+ G+ S AR VFD+L +RT+VSWTSIISGY QN  P++ALR+F++MR+
Sbjct: 208 LYAKCGEISRARAVFDRLSDRTIVSWTSIISGYAQNSQPLEALRIFREMRQ 258

[Close]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match: gi|629103875|gb|KCW69344.1| (hypothetical protein EUGRSUZ_F02828 [Eucalyptus grandis])

HSP 1 Score: 196.1 bits (497), Expect = 9.2e-47
Identity = 84/171 (49.12%), Postives = 129/171 (75.44%), Query Frame = 1 

Query: 111 ELTVSGLYKCGFLVIKFINACLHLRDVNYAHKVFREVLEPDILLWNGIIKGYTQNNIFAG 170
           +L V GL+K  FL+ K +N   +L ++ Y+ KVF E  +PD+ LWN II+GY+++N+F+ 
Sbjct: 95  KLLVLGLHKDSFLITKLVNWSSNLGEIRYSRKVFDEFSDPDVFLWNAIIRGYSRHNMFSD 154

Query: 171 AIRMYKDMQVSGVNPDCFTFLYVLKACSGMSVEGIGKQMHSQTFKYGLGSNVFVQNSLVS 230
           A+ +Y +M  +GV+PD FTF Y+L+AC+G+   GIG+ +H Q +++G  S+VFVQN +V+
Sbjct: 155 AVELYSEMLGTGVSPDGFTFPYILRACTGLPALGIGRCVHGQVYRHGFESDVFVQNGVVT 214

Query: 231 MYARFGQTSSARLVFDKLHNRTVVSWTSIISGYVQNGDPVDALRVFKDMRR 282
           +YA+ G+   AR+VFD+L +RTVVSWTS+ISGY QNG P+++LR+F  MR+
Sbjct: 215 LYAKCGKVKHARIVFDQLRDRTVVSWTSMISGYAQNGQPMESLRIFSQMRK 265

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g04330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP224_ARATH4.4e-4146.51Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN... [more]
PP330_ARATH1.5e-2837.11Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
PP165_ARATH1.9e-2834.94Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN... [more]
PP271_ARATH1.6e-2741.40Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
PP210_ARATH2.4e-2636.51Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG01g04330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLB9_CUCSA3.6e-7469.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175830 PE=4 SV=1[more]
D7SQP8_VITVI1.2e-4855.23Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0134g00210 PE=4 SV=... [more]
A0A059BTM6_EUCGR6.4e-4749.12Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02828 PE=4 SV=1[more]
W9S3H1_9ROSA1.6e-4550.29Uncharacterized protein OS=Morus notabilis GN=L484_007616 PE=4 SV=1[more]
A0A0D2TXW8_GOSRA1.0e-4446.28Uncharacterized protein OS=Gossypium raimondii GN=B456_008G055100 PE=4 SV=1[more]
BLAST of Cp4.1LG01g04330 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12770.12.5e-4246.51 mitochondrial editing factor 22[more]
AT4G21065.18.3e-3037.11 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G20540.11.1e-2934.94 mitochondrial editing factor 21[more]
AT3G49142.19.2e-2941.40 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G03580.11.3e-2736.51 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG01g04330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778700750|ref|XP_011654911.1|5.2e-7469.57PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativu... [more]
gi|659090152|ref|XP_008445864.1|3.1e-7167.63PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Cucumis melo][more]
gi|225447423|ref|XP_002276196.1|1.7e-4855.23PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Vitis vinifera... [more]
gi|720093617|ref|XP_010246108.1|3.2e-4750.88PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Nelumbo nucife... [more]
gi|629103875|gb|KCW69344.1|9.2e-4749.12hypothetical protein EUGRSUZ_F02828 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04330.1Cp4.1LG01g04330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 226..250
score: 0.22coord: 254..282
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 150..197
score: 1.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 155..187
score: 4.5E-6coord: 254..282
score: 6.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 151..185
score: 10.282coord: 221..251
score: 7.454coord: 252..286
score: 10
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 121..282
score: 2.0
NoneNo IPR availablePANTHERPTHR24015:SF477SUBFAMILY NOT NAMEDcoord: 121..282
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g04330CmaCh04G002740Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g04330CmoCh04G002790Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g04330Lsi04G008080Bottle gourd (USVL1VR-Ls)cpelsiB359
Cp4.1LG01g04330MELO3C011735.2Melon (DHL92) v3.6.1cpemedB438
Cp4.1LG01g04330Bhi07G000887Wax gourdcpewgoB0558
Cp4.1LG01g04330CsGy5G006170Cucumber (Gy14) v2cgybcpeB647
Cp4.1LG01g04330Carg25673Silver-seed gourdcarcpeB1186
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g04330Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g04330Cucumber (Gy14) v1cgycpeB0457
Cp4.1LG01g04330Cucurbita maxima (Rimu)cmacpeB723
Cp4.1LG01g04330Cucurbita moschata (Rifu)cmocpeB675
Cp4.1LG01g04330Wild cucumber (PI 183967)cpecpiB445
Cp4.1LG01g04330Wild cucumber (PI 183967)cpecpiB438
Cp4.1LG01g04330Cucumber (Chinese Long) v2cpecuB438
Cp4.1LG01g04330Cucumber (Chinese Long) v2cpecuB444
Cp4.1LG01g04330Watermelon (Charleston Gray)cpewcgB377
Cp4.1LG01g04330Watermelon (97103) v1cpewmB379
Cp4.1LG01g04330Watermelon (97103) v1cpewmB452
Cp4.1LG01g04330Melon (DHL92) v3.5.1cpemeB378
Cp4.1LG01g04330Silver-seed gourdcarcpeB1179
Cp4.1LG01g04330Cucumber (Chinese Long) v3cpecucB0508
Cp4.1LG01g04330Cucumber (Chinese Long) v3cpecucB0542
Cp4.1LG01g04330Cucumber (Chinese Long) v3cpecucB0550