Cp4.1LG01g03360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMediator of RNA polymerase II transcription subunit 31
LocationCp4.1LG01 : 1885723 .. 1889266 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTTTTTTTAAAAAAAAAAAAATATATATATATATATATATATATACTTGCACCAAAGCATAGTTAGTGGGCATATTTCATTATTTTGAGTTAATTTCTCTCTGGGTTGTGAATGTAGCCATTGCCGCGAAGAACTTTGAAGGAGATCAGACCGCTAGCAAGTTCATCAATCTTTTGGGGTTCGAATTTTGACTTCTAGTCAACGAGCTTCCAGTTCGACGAGTCAGATATTCCATGGCTTCTAATTATGGATTAAACGAAGAAGCAGCTGATTCTCCATCATCGTAAGTGTGTTATTTGATCGTTCTCGTGTTCTGTCGTTTTTACTCTTTGTTTAGTACTGTTTTCATTTTGATTATAGCTTCAATTCGTTTTTTCTACTTTGTCGACGGATTGATTATAGGACTGCCTGTTGATTGATGGATTATTTTTTGTTTGGTAAATAACTATCAGGCCTACGAATGTGTACAAGGATCCAGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTCGTTCAATGTCTCGCCAATCCGACCTACATTCACTGTACGTTCTTCCAAAATTTAGGGTTTCTGTGCGATTGAAAATATCAGTTGCCTGAAACTTCAACTTGGAGTGTGCGATTGTATACTAACTCTGTGGCATAGAGGGAAAAGCTATTAGATGTCTCAAAACGATGGGATTAAGAAAATGAAACAATCAAAATATCAAAAAGTAATTAAGAAAAGGAAAAAAAAAAAAAAATCCATTAGATTCGTTTCGTTGTAGTTAAAGAATTACTTCAATCTGTAACTGAAGACAACAGCGAATCTGAAGACAGATTCTGGAAGAAAATGGCTCAAAGAAAAAGATCACTACTAAATATCAGATTTGGCATTAAGAGCCAATGTTCCTTTTAAATTTGCATCTTTATGAGCTAGATTTTTCACTTTTAGGCCTGATTACTGCTGTAACTTACTGTTGTTCCTACAAAATCATCATATAATTTATCTAATGAGCCTAATCAACTCAGAGGTCGATGCTCGTCTTGTTGATCTTTCTGCCTTGTAAGACGTGTTAGCATTGTACAATTCCATAATGTGGTTCGACATATAATCGTTCCATAAATTTTATTCTTTTGATGATATGATATGGTCTCTTATGACGGAAGTTGTGAGATCCCACATTGGTTGGAGAGAGTAATGAGTCCTTGCTTATAAGGGTGTGACAACCTCTCCCTAGTAGACGGGTTTAAATCCGTAAGGTTGACGGCGATACGTAACGGACCAAAGCGGACAATATCTGCTAGTGGTGGGCTTGGGTTGTTACAAATGGTATGCTAACGAGGATGCTGGGCCCCCAAGGGGGTGGATTGTGAGATCTCACATTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCCTCCTAGTAGACGCGTTTTAGAATTGTGAGGCTAACAACGATATGTAACGGGCTAAAGTGGACAATATCCGCTAGTGGTGGGTTTGGGCTATATACTTCTGAAGTATGACACAAAATTTTAGGGTAGTATCTTCATGTACTCACTTGGATTTGCATCTTAATGAATAATGCATGCACACTGGCATTGAATTGTTGGAACAAATGCTTTTTATGCTGATCATCTAGTTTTATGCAGATCTGGCTCAGAATCGTTACCTCGAGGACGAAGCTTTTATCGGTTACTTGAAGTACCTTCAATATTGGCAACAGCCGGAGTATATTAAGTATATAATGTGAGTCGGATCTTTCCCTCTCGTGTTAAGCTTTTCGTGAACTGATTACGCTATTGGTATTAACATCAATGTTTTCTAGGTATCCTCATTGTCTCTTTTTTCTTGAACTTCTACAAAATGCGAACTTCCGAAGTGCAATGGCTCATCCTGCCAACAAGGTTAACTTCTGCTGTTTTGTTCAACTTCCCTTTTGAGATCTGAATGTTATTATTGCAAATGGCATGAACTTGCTGATGAGATAAAATTTAATGATAGATACTTTTTTGCTTCCTGACCTGTTTGATCTTTATGAGCTGATATTTCCAGTTCCTTTTTCTTAGTATTTTAACACAGTTGCATTGTTGGGAATGCCTTAGGAATTGGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACATATTTTACCGCGATCATTTCCCGAACCTGCTGCGCTACCACCCCCAGTTTCTGCTCCATCTCAGGCACCTGTGCCTACCACAGCCCCTGCCATGGCAGCTTCTCCTGCTGCTACACCTGCCCTTTCGCCGATGCAGTATGGTATTCCCCCTGGATCCGGACTTTCAAAGAACGACATGAAGAATGCAGCAATTGATCGACGAAAGAGAAAACATGTAATCTGTTGCATTTCATTTGTTTATTTATTTGGTTCTTTTTTAAAATCTTATTAGTGTTCTGTGAGATCTCACATCGGTTGGAGAGAAAAACGAAGCATTCCTTATAAGGGTGTGTAAACCTCTCCCTAACAGATGCGTTTTAAAACCCTGAGGCTGACGGCTATACGTAACGGGCCAAAACGGACAATATCTACTAGCAGTGAGCTTGGACTTGGGCTGTTACAAATGGTATAAGAGCCAGACACCGAGCGGTGTGCCAGTTAAGACGTTGTGCTCCCAAGGGGAGTGGATTATGAGATCCCACATCGGTTGGAGAGGAGAATAAAGCATTCTGTATAAAGATGTGGAAACCTCTCCCTAACATATATGTTTTAAAATCGTGAGGCTGACGGCGATACATACGTAAAGGGCCAAAGCGGACAATATCTGTTAACAGTGGGCTTAGGCTGTTACATAGTGCGTTTAGAATACATGCATTTTCCTTTGCCCCTTAAAAACTCTCTTTTCTTTTGCTTTTTGACAGGAAAGAAGTATGTAGTTTAGCCAAAACTAGGCTGGATGCGGGAGCAGCTCGTGAGGTAATCTGCATTGATGTCAAAACTTAAGTACTTTCCATGAATTTTCCTGTTACTTGGGGTCGTGCAAAATATCTCCATTGTGAAGCTCATAAACACAGGCTACACGAGCTCGATGTTTTTCGGTTCGAGTAATATGTTCATGGAAGAAGCTCTACATGTTATTAGTATGAAATGTTCCGAAGCAATCCTTAAAAAAACTGCCTACCGATATGTCGGGTTATTATATCCACCTATAATCCGTGGTAAGCAGTTCCTTCCCTAACTTTCGCTCTCTCCTTCTTTAACTGACTTGACATGAAACATTGTGGTTGTATGTGGTTCGAATGGTATTAGGATAGAATTAGTAACATTACGACGGTTGTAAGGATATATTAGTAATTAGCTAGAAAAGTCGTGAAGGTAGTTTGTTATAAGTAGGGAGATCGTTTAGCGGTTTCGGCTCGAGTGGCATCTCAAGGAGAGGTTTTAGGTACCTCGATTACTTTGGAAGTTATCTTGTTGTAATGTTATTTTTCGTATTGGTATGATATGCCCAAATGAGGTCTCTTAGATATCGGTATTCTCTTGGTCTTTAAAT

mRNA sequence

AATTTTTTTTTAAAAAAAAAAAAATATATATATATATATATATATATACTTGCACCAAAGCATAGTTAGTGGGCATATTTCATTATTTTGAGTTAATTTCTCTCTGGGTTGTGAATGTAGCCATTGCCGCGAAGAACTTTGAAGGAGATCAGACCGCTAGCAAGTTCATCAATCTTTTGGGGTTCGAATTTTGACTTCTAGTCAACGAGCTTCCAGTTCGACGAGTCAGATATTCCATGGCTTCTAATTATGGATTAAACGAAGAAGCAGCTGATTCTCCATCATCGCCTACGAATGTGTACAAGGATCCAGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTCGTTCAATGTCTCGCCAATCCGACCTACATTCACTATCTGGCTCAGAATCGTTACCTCGAGGACGAAGCTTTTATCGGTTACTTGAAGTACCTTCAATATTGGCAACAGCCGGAGTATATTAAGTATATAATGTATCCTCATTGTCTCTTTTTTCTTGAACTTCTACAAAATGCGAACTTCCGAAGTGCAATGGCTCATCCTGCCAACAAGGAATTGGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACATATTTTACCGCGATCATTTCCCGAACCTGCTGCGCTACCACCCCCAGTTTCTGCTCCATCTCAGGCACCTGTGCCTACCACAGCCCCTGCCATGGCAGCTTCTCCTGCTGCTACACCTGCCCTTTCGCCGATGCAGTATGGTATTCCCCCTGGATCCGGACTTTCAAAGAACGACATGAAGAATGCAGCAATTGATCGACGAAAGAGAAAACATGAAAGAAGTATGTAGTTTAGCCAAAACTAGGCTGGATGCGGGAGCAGCTCGTGAGGTAATCTGCATTGATGTCAAAACTTAAGTACTTTCCATGAATTTTCCTGTTACTTGGGGTCGTGCAAAATATCTCCATTGTGAAGCTCATAAACACAGGCTACACGAGCTCGATGTTTTTCGGTTCGAGTAATATGTTCATGGAAGAAGCTCTACATGTTATTAGTATGAAATGTTCCGAAGCAATCCTTAAAAAAACTGCCTACCGATATGTCGGGTTATTATATCCACCTATAATCCGTGGTAAGCAGTTCCTTCCCTAACTTTCGCTCTCTCCTTCTTTAACTGACTTGACATGAAACATTGTGGTTGTATGTGGTTCGAATGGTATTAGGATAGAATTAGTAACATTACGACGGTTGTAAGGATATATTAGTAATTAGCTAGAAAAGTCGTGAAGGTAGTTTGTTATAAGTAGGGAGATCGTTTAGCGGTTTCGGCTCGAGTGGCATCTCAAGGAGAGGTTTTAGGTACCTCGATTACTTTGGAAGTTATCTTGTTGTAATGTTATTTTTCGTATTGGTATGATATGCCCAAATGAGGTCTCTTAGATATCGGTATTCTCTTGGTCTTTAAAT

Coding sequence (CDS)

ATGGCTTCTAATTATGGATTAAACGAAGAAGCAGCTGATTCTCCATCATCGCCTACGAATGTGTACAAGGATCCAGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTCGTTCAATGTCTCGCCAATCCGACCTACATTCACTATCTGGCTCAGAATCGTTACCTCGAGGACGAAGCTTTTATCGGTTACTTGAAGTACCTTCAATATTGGCAACAGCCGGAGTATATTAAGTATATAATGTATCCTCATTGTCTCTTTTTTCTTGAACTTCTACAAAATGCGAACTTCCGAAGTGCAATGGCTCATCCTGCCAACAAGGAATTGGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACATATTTTACCGCGATCATTTCCCGAACCTGCTGCGCTACCACCCCCAGTTTCTGCTCCATCTCAGGCACCTGTGCCTACCACAGCCCCTGCCATGGCAGCTTCTCCTGCTGCTACACCTGCCCTTTCGCCGATGCAGTATGGTATTCCCCCTGGATCCGGACTTTCAAAGAACGACATGAAGAATGCAGCAATTGATCGACGAAAGAGAAAACATGAAAGAAGTATGTAG

Protein sequence

MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKNDMKNAAIDRRKRKHERSM
Homology
[Close]
BLAST of Cp4.1LG01g03360 vs. Swiss-Prot
Match: MED31_ARATH (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.2e-73
Identity = 144/202 (71.29%), Postives = 161/202 (79.70%), Query Frame = 1 

Query: 1   MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCL+FLELLQN NFR+AMAHPANKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 121 NYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPG 180
           NYRNNRLKHILPR  PEP    PPV     AP  +  PA +A+ A +PALSPMQY     
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPV-----APSTSLPPAPSATAALSPALSPMQY----N 180

Query: 181 SGLSKNDMKN---AAIDRRKRK 200
           + LSKND +N     IDRRKRK
Sbjct: 181 NMLSKNDTRNMGATGIDRRKRK 193

[Close]
BLAST of Cp4.1LG01g03360 vs. Swiss-Prot
Match: MED31_DICDI (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum GN=med31 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.1e-31
Identity = 56/97 (57.73%), Postives = 76/97 (78.35%), Query Frame = 1 

Query: 31  RFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFL 90
           RF++ELEF+QCL+NP Y++YLAQNRY +D+AF+ YL YLQYW++PEY K+I+YP  L+FL
Sbjct: 55  RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFL 114

Query: 91  ELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 128
           +LLQ   FR  + H  + +  H QQFY W+ YRNNR+
Sbjct: 115 DLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRM 151

[Close]
BLAST of Cp4.1LG01g03360 vs. Swiss-Prot
Match: MED31_BOVIN (Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW++PEY KY+ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 84  PHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114

[Close]
BLAST of Cp4.1LG01g03360 vs. Swiss-Prot
Match: MED31_MOUSE (Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW++PEY KY+ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 84  PHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114

[Close]
BLAST of Cp4.1LG01g03360 vs. Swiss-Prot
Match: MED31_HUMAN (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-24
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW+ PEY KY+ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKY 69

Query: 84  PHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114

[Close]
BLAST of Cp4.1LG01g03360 vs. TrEMBL
Match: A0A0A0KZ88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025160 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 7.7e-97
Identity = 182/206 (88.35%), Postives = 191/206 (92.72%), Query Frame = 1 

Query: 1   MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASN+GL EE AD+PSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLKEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCLFFLELLQN+NFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRSFPEPAALPPPVSAPSQA--PVPTTAPAMAASPAATPALSPMQYGIP 180
           NYRNNRLKHILPR  PEPAALPPPV+AP QA  P PT+AP MAASPAA PALSP+QYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAA-PALSPIQYGIP 180

Query: 181 PGSGLSKNDMKNAAIDRRKRKHERSM 205
           PG GL KNDMK A IDRRKRKHERSM
Sbjct: 181 PGPGLPKNDMKGAGIDRRKRKHERSM 205

[Close]
BLAST of Cp4.1LG01g03360 vs. TrEMBL
Match: V4TKG6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032791mg PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.9e-83
Identity = 154/194 (79.38%), Postives = 170/194 (87.63%), Query Frame = 1 

Query: 8   NEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67
           NEEA+D+PSSP  VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 7   NEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 66

Query: 68  YLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 127
           YLQYWQ+PEYIK+IMYPHCL+FLELLQNANFR+AMAHPANKELAHRQQF+FWKNYRNNRL
Sbjct: 67  YLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRL 126

Query: 128 KHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKND 187
           KHILPR  PEP+  PPP +AP   P P     + A+P   PALSPMQYGIPPGS L KND
Sbjct: 127 KHILPRPLPEPSEAPPPAAAPPLPPAPPVLTPVTAAPG--PALSPMQYGIPPGSALMKND 186

Query: 188 MKNAAIDRRKRKHE 202
           M++++IDRRKRK +
Sbjct: 187 MRSSSIDRRKRKKD 198

[Close]
BLAST of Cp4.1LG01g03360 vs. TrEMBL
Match: D7T7W9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02760 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.8e-81
Identity = 153/194 (78.87%), Postives = 169/194 (87.11%), Query Frame = 1 

Query: 8   NEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67
           ++ AAD+P+SP NVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 7   SDSAADTPTSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 66

Query: 68  YLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 127
           YLQYWQQPEYIK+IMYPHCLFFLELLQNANFR+AMAHP +KELAHRQQF++WKNYRNNRL
Sbjct: 67  YLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNNRL 126

Query: 128 KHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKND 187
           KHILP+  PEP A  P    P Q+  PTT   +A + A +PALSPMQYGIP GS LSKND
Sbjct: 127 KHILPKPLPEPLAGTPAPGPPPQSAPPTT---IAVTSAGSPALSPMQYGIPAGSSLSKND 186

Query: 188 MKNAAIDRRKRKHE 202
           M+N+AIDRRKRK E
Sbjct: 187 MRNSAIDRRKRKKE 197

[Close]
BLAST of Cp4.1LG01g03360 vs. TrEMBL
Match: W9SC50_9ROSA (Mediator of RNA polymerase II transcription subunit 31 OS=Morus notabilis GN=L484_017088 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-79
Identity = 150/192 (78.12%), Postives = 162/192 (84.38%), Query Frame = 1 

Query: 8   NEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67
           ++E+ADSPSSP N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 7   SDESADSPSSPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 66

Query: 68  YLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 127
           YLQYWQQPEYIK+IMYPH LFFLELLQNANFR AMAHP NKELAHRQQFY+WKNYRNNRL
Sbjct: 67  YLQYWQQPEYIKFIMYPHSLFFLELLQNANFRHAMAHPGNKELAHRQQFYYWKNYRNNRL 126

Query: 128 KHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKND 187
           KHILPR  PEP   PP  + P Q   P TAP +A   A  P LSPMQY  P GS L+K D
Sbjct: 127 KHILPRPLPEPPVAPPAPAPPQQPMPPVTAPTIAMPAAPAPVLSPMQYVNPQGSSLAKTD 186

Query: 188 MKNAAIDRRKRK 200
           M+N+A+DRRKRK
Sbjct: 187 MRNSAVDRRKRK 198

[Close]
BLAST of Cp4.1LG01g03360 vs. TrEMBL
Match: A0A061G047_THECC (Mediator of RNA polymerase II transcription subunit 31 isoform 2 OS=Theobroma cacao GN=TCM_014808 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79
Identity = 155/204 (75.98%), Postives = 175/204 (85.78%), Query Frame = 1 

Query: 8   NEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67
           ++ A++SPSSP  VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 7   SDNASNSPSSPKTVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 66

Query: 68  YLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 127
           YLQYWQ+PEYIK+IMYPHCL+FLELLQNA+FR+ MAHP NKELAHRQQF+FWKNYRNNRL
Sbjct: 67  YLQYWQRPEYIKFIMYPHCLYFLELLQNASFRNGMAHPVNKELAHRQQFFFWKNYRNNRL 126

Query: 128 KHILPRSFPEPAALP---PPVSAPSQA---PVPTTAPAM-AASPAATPALSPMQYGIPPG 187
           K ILP+  PEP A P   PP + P QA   PVP T  AM +ASPA + ALSPM YG+PPG
Sbjct: 127 KFILPKPPPEPVAAPAPLPPTAVPPQAAMPPVPATTIAMTSASPAPSSALSPMPYGLPPG 186

Query: 188 SGLSKNDMKNAAIDRRKRKHERSM 205
           S L+KNDM+N+ IDRRKRK+ERS+
Sbjct: 187 SVLAKNDMRNSGIDRRKRKYERSL 210

[Close]
BLAST of Cp4.1LG01g03360 vs. TAIR10
Match: AT5G19910.2 (AT5G19910.2 SOH1 family protein)

HSP 1 Score: 260.8 bits (665), Expect = 7.2e-70
Identity = 144/232 (62.07%), Postives = 161/232 (69.40%), Query Frame = 1 

Query: 1   MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANK------------ 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCL+FLELLQN NFR+AMAHPANK            
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKWFKMLGYWCFWN 120

Query: 121 ------------------ELAHRQQFYFWKNYRNNRLKHILPRSFPEPAALPPPVSAPSQ 180
                             ELAHRQQFY+WKNYRNNRLKHILPR  PEP    PPV     
Sbjct: 121 VFWGLVEFRVSLVQNLAYELAHRQQFYYWKNYRNNRLKHILPRPLPEPVPPQPPV----- 180

Query: 181 APVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKNDMKN---AAIDRRKRK 200
           AP  +  PA +A+ A +PALSPMQY     + LSKND +N     IDRRKRK
Sbjct: 181 APSTSLPPAPSATAALSPALSPMQY----NNMLSKNDTRNMGATGIDRRKRK 223

[Close]
BLAST of Cp4.1LG01g03360 vs. NCBI nr
Match: gi|659107763|ref|XP_008453845.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 4.5e-98
Identity = 185/206 (89.81%), Postives = 192/206 (93.20%), Query Frame = 1 

Query: 1   MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASN+GLNEEAAD+PSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCLFFLELLQN+NFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRSFPEPAALPPPVSAPSQAPV--PTTAPAMAASPAATPALSPMQYGIP 180
           NYRNNRLKHILPR  PEPAALPPPVSAP QAPV  PT AP +AASP AT ALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASP-ATAALSPMQYGIP 180

Query: 181 PGSGLSKNDMKNAAIDRRKRKHERSM 205
           PG GL KNDMK A IDRRKRKHERSM
Sbjct: 181 PGPGLPKNDMKGAGIDRRKRKHERSM 205

[Close]
BLAST of Cp4.1LG01g03360 vs. NCBI nr
Match: gi|449458311|ref|XP_004146891.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 1.1e-96
Identity = 182/206 (88.35%), Postives = 191/206 (92.72%), Query Frame = 1 

Query: 1   MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASN+GL EE AD+PSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLKEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCLFFLELLQN+NFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRSFPEPAALPPPVSAPSQA--PVPTTAPAMAASPAATPALSPMQYGIP 180
           NYRNNRLKHILPR  PEPAALPPPV+AP QA  P PT+AP MAASPAA PALSP+QYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAA-PALSPIQYGIP 180

Query: 181 PGSGLSKNDMKNAAIDRRKRKHERSM 205
           PG GL KNDMK A IDRRKRKHERSM
Sbjct: 181 PGPGLPKNDMKGAGIDRRKRKHERSM 205

[Close]
BLAST of Cp4.1LG01g03360 vs. NCBI nr
Match: gi|567889026|ref|XP_006437035.1| (hypothetical protein CICLE_v10032791mg [Citrus clementina])

HSP 1 Score: 315.5 bits (807), Expect = 7.0e-83
Identity = 154/194 (79.38%), Postives = 170/194 (87.63%), Query Frame = 1 

Query: 8   NEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67
           NEEA+D+PSSP  VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 7   NEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 66

Query: 68  YLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 127
           YLQYWQ+PEYIK+IMYPHCL+FLELLQNANFR+AMAHPANKELAHRQQF+FWKNYRNNRL
Sbjct: 67  YLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRL 126

Query: 128 KHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKND 187
           KHILPR  PEP+  PPP +AP   P P     + A+P   PALSPMQYGIPPGS L KND
Sbjct: 127 KHILPRPLPEPSEAPPPAAAPPLPPAPPVLTPVTAAPG--PALSPMQYGIPPGSALMKND 186

Query: 188 MKNAAIDRRKRKHE 202
           M++++IDRRKRK +
Sbjct: 187 MRSSSIDRRKRKKD 198

[Close]
BLAST of Cp4.1LG01g03360 vs. NCBI nr
Match: gi|225454890|ref|XP_002279047.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Vitis vinifera])

HSP 1 Score: 308.1 bits (788), Expect = 1.1e-80
Identity = 153/194 (78.87%), Postives = 169/194 (87.11%), Query Frame = 1 

Query: 8   NEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67
           ++ AAD+P+SP NVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 7   SDSAADTPTSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 66

Query: 68  YLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 127
           YLQYWQQPEYIK+IMYPHCLFFLELLQNANFR+AMAHP +KELAHRQQF++WKNYRNNRL
Sbjct: 67  YLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNNRL 126

Query: 128 KHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKND 187
           KHILP+  PEP A  P    P Q+  PTT   +A + A +PALSPMQYGIP GS LSKND
Sbjct: 127 KHILPKPLPEPLAGTPAPGPPPQSAPPTT---IAVTSAGSPALSPMQYGIPAGSSLSKND 186

Query: 188 MKNAAIDRRKRKHE 202
           M+N+AIDRRKRK E
Sbjct: 187 MRNSAIDRRKRKKE 197

[Close]
BLAST of Cp4.1LG01g03360 vs. NCBI nr
Match: gi|703147709|ref|XP_010109149.1| (Mediator of RNA polymerase II transcription subunit 31 [Morus notabilis])

HSP 1 Score: 304.3 bits (778), Expect = 1.6e-79
Identity = 150/192 (78.12%), Postives = 162/192 (84.38%), Query Frame = 1 

Query: 8   NEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67
           ++E+ADSPSSP N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 7   SDESADSPSSPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 66

Query: 68  YLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRL 127
           YLQYWQQPEYIK+IMYPH LFFLELLQNANFR AMAHP NKELAHRQQFY+WKNYRNNRL
Sbjct: 67  YLQYWQQPEYIKFIMYPHSLFFLELLQNANFRHAMAHPGNKELAHRQQFYYWKNYRNNRL 126

Query: 128 KHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKND 187
           KHILPR  PEP   PP  + P Q   P TAP +A   A  P LSPMQY  P GS L+K D
Sbjct: 127 KHILPRPLPEPPVAPPAPAPPQQPMPPVTAPTIAMPAAPAPVLSPMQYVNPQGSSLAKTD 186

Query: 188 MKNAAIDRRKRK 200
           M+N+A+DRRKRK
Sbjct: 187 MRNSAVDRRKRK 198

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MED31_ARATH2.2e-7371.29Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana G... [more]
MED31_DICDI8.1e-3157.73Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium... [more]
MED31_BOVIN1.5e-2449.52Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE... [more]
MED31_MOUSE1.9e-2449.52Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 ... [more]
MED31_HUMAN2.5e-2449.52Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 ... [more]
BLAST of Cp4.1LG01g03360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ88_CUCSA7.7e-9788.35Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025160 PE=4 SV=1[more]
V4TKG6_9ROSI4.9e-8379.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032791mg PE=4 SV=1[more]
D7T7W9_VITVI7.8e-8178.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02760 PE=4 SV=... [more]
W9SC50_9ROSA1.1e-7978.13Mediator of RNA polymerase II transcription subunit 31 OS=Morus notabilis GN=L48... [more]
A0A061G047_THECC1.9e-7975.98Mediator of RNA polymerase II transcription subunit 31 isoform 2 OS=Theobroma ca... [more]
BLAST of Cp4.1LG01g03360 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19910.27.2e-7062.07 SOH1 family protein[more]
BLAST of Cp4.1LG01g03360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107763|ref|XP_008453845.1|4.5e-9889.81PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis melo][more]
gi|449458311|ref|XP_004146891.1|1.1e-9688.35PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis sativ... [more]
gi|567889026|ref|XP_006437035.1|7.0e-8379.38hypothetical protein CICLE_v10032791mg [Citrus clementina][more]
gi|225454890|ref|XP_002279047.1|1.1e-8078.87PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Vitis vinifer... [more]
gi|703147709|ref|XP_010109149.1|1.6e-7978.13Mediator of RNA polymerase II transcription subunit 31 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016592 mediator complex
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003712 transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03360.1Cp4.1LG01g03360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT SOH1coord: 1..177
score: 1.3
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 30..122
score: 2.0
NoneNo IPR availablePANTHERPTHR13186:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31coord: 1..177
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03360Cucsa.093930Cucumber (Gy14) v1cgycpeB0191
Cp4.1LG01g03360CmaCh16G002300Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03360CmaCh04G003740Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03360CmoCh04G003950Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03360CmoCh16G002500Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03360Cla010693Watermelon (97103) v1cpewmB421
Cp4.1LG01g03360Csa4G025160Cucumber (Chinese Long) v2cpecuB401
Cp4.1LG01g03360MELO3C017626Melon (DHL92) v3.5.1cpemeB425
Cp4.1LG01g03360ClCG07G017200Watermelon (Charleston Gray)cpewcgB403
Cp4.1LG01g03360CSPI04G04310Wild cucumber (PI 183967)cpecpiB398
Cp4.1LG01g03360Lsi07G001380Bottle gourd (USVL1VR-Ls)cpelsiB374
Cp4.1LG01g03360MELO3C017626.2Melon (DHL92) v3.6.1cpemedB497
Cp4.1LG01g03360CsaV3_4G004400Cucumber (Chinese Long) v3cpecucB0498
Cp4.1LG01g03360Bhi01G001986Wax gourdcpewgoB0519
Cp4.1LG01g03360CsGy4G004220Cucumber (Gy14) v2cgybcpeB503
Cp4.1LG01g03360Carg16772Silver-seed gourdcarcpeB1216
Cp4.1LG01g03360Carg08048Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03360Cucumber (Chinese Long) v3cpecucB0540
Cp4.1LG01g03360Wax gourdcpewgoB0477
Cp4.1LG01g03360Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03360Cucurbita pepo (Zucchini)cpecpeB403
Cp4.1LG01g03360Bottle gourd (USVL1VR-Ls)cpelsiB314
Cp4.1LG01g03360Bottle gourd (USVL1VR-Ls)cpelsiB340
Cp4.1LG01g03360Watermelon (Charleston Gray)cpewcgB372
Cp4.1LG01g03360Silver-seed gourdcarcpeB1001