Cp4.1LG01g02220 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g02220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 2584392 .. 2585237 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCTATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATTAGTTGTTCCAGTACTGACGCCATTTTAGGTCCCTCTGTTTTCGAGACATGTAGCGTTTGCCGAATCGACGGTTGTTTAGGTTGCGATTTCTTTCCGTCGTCGTCTCAAGTCGATAACGAGAAGAAGAGCGGCAAAAGACGGTCGAAGAAGACTTACAGAGGCGTAAGGCAACGACCTTGGGGAAAATGGGCCGCCGAGATCCGAAACCCGAAACTCGCGACCCGAGTCTGGTTAGGGACGTTCAATACAGCCGAAGAAGCCGCTAGGGCTTACGATAAGGCAGCTTGGGAGTTCCGAGGGCCGCGAGCGAAGCTTAATTTTCCATTTACGGATGATTCGTTGCGAATGATGAGTTCGGAGCAGCAAGAACAGAGACCGGAAAATGAAATGTCGAAGAACAGTAGCAATTCGACGGCAGCGACGGCGGCAATTGGAATCGGAAATGATGATGAAATTTGGGGGAAGATTGCAAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTTTCGTAG

mRNA sequence

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCTATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATTAGTTGTTCCAGTACTGACGCCATTTTAGCGACGGCGGCAATTGGAATCGGAAATGATGATGAAATTTGGGGGAAGATTGCAAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTTTCGTAG

Coding sequence (CDS)

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCTATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATTAGTTGTTCCAGTACTGACGCCATTTTAGCGACGGCGGCAATTGGAATCGGAAATGATGATGAAATTTGGGGGAAGATTGCAAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTTTCGTAG

Protein sequence

MSSLKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILATAAIGIGNDDEIWGKIAKDEADQWMSSLMTYHGGESPDSASTGIWEFS
Homology
[Close]
BLAST of Cp4.1LG01g02220 vs. TrEMBL
Match: A0A0A0L9A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207390 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 81  SDSFSVSGTTSSISCSSTDAILATAAIGIGNDDEIWGKIAKDEADQWMSSLMTYHGGESP 140
           S    +  T S IS +S+++    A IGIGN+DEIWGKIAKDE DQWMS+LMT HGG+S 
Sbjct: 208 SSEREIQRTESEISRNSSNS----AGIGIGNEDEIWGKIAKDEMDQWMSTLMTDHGGDSS 267

Query: 141 DSASTGIWEFS 152
           DSAS G WEFS
Sbjct: 268 DSASIGTWEFS 274

[Close]
BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match: gi|659112224|ref|XP_008456122.1| (PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = 1 

Query: 1   MSSLKRSRSTEFSESY-FSLPPPYLRP-ISADQELSVIVTALTSVVSGTAFDSDF-MENR 60
           M+SLKRSRSTE  +S+ FSLPPPY RP IS DQELSVIVTALTSVVSGTA D  + M + 
Sbjct: 1   MNSLKRSRSTESPQSFHFSLPPPYFRPCISTDQELSVIVTALTSVVSGTASDLHYSMADG 60

Query: 61  FWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILA 104
           FW   Q PPP+FD       + ASDSFS S TTSS+S SSTDAI +
Sbjct: 61  FWRQNQTPPPSFD-------SPASDSFSASATTSSLSSSSTDAIFS 99

[Close]
BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match: gi|449446085|ref|XP_004140802.1| (PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 81  SDSFSVSGTTSSISCSSTDAILATAAIGIGNDDEIWGKIAKDEADQWMSSLMTYHGGESP 140
           S    +  T S IS +S+++    A IGIGN+DEIWGKIAKDE DQWMS+LMT HGG+S 
Sbjct: 208 SSEREIQRTESEISRNSSNS----AGIGIGNEDEIWGKIAKDEMDQWMSTLMTDHGGDSS 267

Query: 141 DSASTGIWEFS 152
           DSAS G WEFS
Sbjct: 268 DSASIGTWEFS 274

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g02220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g02220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9A3_CUCSA1.1e-1261.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207390 PE=4 SV=1[more]
BLAST of Cp4.1LG01g02220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g02220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112224|ref|XP_008456122.1|2.1e-2065.09PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis melo][more]
gi|449446085|ref|XP_004140802.1|1.6e-1261.97PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042128 nitrate assimilation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0048046 apoplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0048307 ferredoxin-nitrite reductase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g02220.1Cp4.1LG01g02220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g02220Cucsa.244290Cucumber (Gy14) v1cgycpeB0654
Cp4.1LG01g02220CmaCh04G004940Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g02220CmoCh04G005340Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g02220Cla013063Watermelon (97103) v1cpewmB433
Cp4.1LG01g02220Csa3G207390Cucumber (Chinese Long) v2cpecuB389
Cp4.1LG01g02220MELO3C019506Melon (DHL92) v3.5.1cpemeB412
Cp4.1LG01g02220ClCG05G009970Watermelon (Charleston Gray)cpewcgB394
Cp4.1LG01g02220CSPI03G18550Wild cucumber (PI 183967)cpecpiB388
Cp4.1LG01g02220Lsi05G002080Bottle gourd (USVL1VR-Ls)cpelsiB369
Cp4.1LG01g02220MELO3C019506.2Melon (DHL92) v3.6.1cpemedB481
Cp4.1LG01g02220CsaV3_3G018600Cucumber (Chinese Long) v3cpecucB0484
Cp4.1LG01g02220Bhi01G001253Wax gourdcpewgoB0517
Cp4.1LG01g02220CsGy3G018410Cucumber (Gy14) v2cgybcpeB362
Cp4.1LG01g02220Carg11287Silver-seed gourdcarcpeB0927
Cp4.1LG01g02220Carg08167Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g02220Cp4.1LG14g04230Cucurbita pepo (Zucchini)cpecpeB234
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g02220Cucurbita pepo (Zucchini)cpecpeB261
Cp4.1LG01g02220Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG01g02220Cucumber (Gy14) v1cgycpeB0599
Cp4.1LG01g02220Cucurbita maxima (Rimu)cmacpeB136
Cp4.1LG01g02220Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g02220Cucurbita maxima (Rimu)cmacpeB531
Cp4.1LG01g02220Cucurbita moschata (Rifu)cmocpeB114
Cp4.1LG01g02220Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g02220Cucurbita moschata (Rifu)cmocpeB489
Cp4.1LG01g02220Wild cucumber (PI 183967)cpecpiB470
Cp4.1LG01g02220Cucumber (Chinese Long) v2cpecuB470
Cp4.1LG01g02220Bottle gourd (USVL1VR-Ls)cpelsiB348
Cp4.1LG01g02220Watermelon (Charleston Gray)cpewcgB378
Cp4.1LG01g02220Watermelon (Charleston Gray)cpewcgB392
Cp4.1LG01g02220Watermelon (97103) v1cpewmB431
Cp4.1LG01g02220Watermelon (97103) v1cpewmB453
Cp4.1LG01g02220Melon (DHL92) v3.5.1cpemeB394
Cp4.1LG01g02220Melon (DHL92) v3.5.1cpemeB411
Cp4.1LG01g02220Cucumber (Gy14) v2cgybcpeB942
Cp4.1LG01g02220Melon (DHL92) v3.6.1cpemedB457
Cp4.1LG01g02220Cucumber (Chinese Long) v3cpecucB0582
Cp4.1LG01g02220Wax gourdcpewgoB0516