Cp4.1LG01g00950 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Splicing regulatory glutamine/lysine-rich 1
Location	Cp4.1LG01 : 3370637 .. 3374632 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAAGAAACGGACGGCGGCAAAAAGAGGGGGGAGAAACACACCTCTTCACTAACTTTTAAGAGCGATCCAAATCCGAAGAGGAATAAACCCTACGAGAGTTTGGCGTTAATAGGCGAAACCCAAATCCCAATTTCTTTTCTCGATCATTCCATCAAGAGCCCTAGATCACATTCTCTGTTTTTCTTTTAAAAAATCCTTTCTTTTTGCTTCACCTCCTTCCATTTCTGGCCTCTCTCAAATGGGTTCTCTTTATACTTTCTTTTAATGCCAATTGGTGTTTATCCGAGTGGTGGGAATTTACGGATGGACTGAGAGACCTTCTATACTTCCAATTTTGTTTGCTAATTTACTTTGTACTTTGTATATTACATTAACATATACATATATACTTTATATTTCTATTTGCAATTCGGTTTTTTGGCATCTGGGTGTTGATTCTATGGCTGTGGTTGCTGAGGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGGTATTCTTTTATTTTGATCTGTTTTTTTTTTTTTTTTCTTGTTTAGAGCTTGATGTCGAGATTCAATCCGTGATTCTGTTTGATCTGGGATTGTTTGTGTTCTTGTTGATTGATTTTGAGTTAATGTGTGTGTGTTTTAATGTGATGAATTTTGCTCTGGGGTGTCTGGATCAAATTCCTGGAAAGGATCATTGTGCTATTTGATTTATTTAATGTCTCGACACTGAAAATTATTGACGATGCCTAAATTCAATCCGTAGTTTCATTGCCAGAATTGAATTGAATTATACTTTTTGCTTCATCAGGGATTGTTTGTACTTACTGATTGATTCCAAGTTAATGTATGTATGTTTTTAATGTGGTGAAATTCACTCTTGTGATGGGAATATTTCCTAATTGAGTAATTGGAATTGTTCACTGTGCTATTGGTATTATTTACAGTTCTTGACTCTGAAAATTATTTTAGCAATCTGTGTGTTGATCACTTCCCATAACAACTGAATTGCACTGCAATGTTTAGGAATCATATCATGTAATTGACTGCTATAGTTTTCTATCACATTGAGCTCAGTTCACATCTCCGAACGAGAATTTTATGGTTCGGATTCTTGATAATACTGGCCATTCCTGTTTTGATTTGTCTGATTCACCTTCCAATTATCTATTAAATCACCTCAGATCTGTTTGGTATAATGATAACTCGTCATTATCTGTTTATGTTGCTACAAGTCTTTTATTATTACGGATGATATATCGATTCTTACTTCTTTTCCCATAACTTCTAAAGAATTTATCAAGAGATCCATATGCTTTTATGTTACTTTCTGTTTGTTACTGATACACCCTGGTCTACTCGCTTTCCTTGCAAATTTACTTAATGGGGATGTTCTCATTTAATACTTTAGATTCCAACGTCCCGACTGTCTTGAGCTTACTTGGAACGATAAATGTAACTATATTATTATCCGCCTCAATCCTAAGAAATAATCAAAATACATGCTTCATCATATTGTCTTACGTTCTTGTCTCTGCGTTAGACGCTTACCCTGTTTTAGTTTTCTCGTGTCCAGTATTAGGATCATAAGACTAAAATAGTATGAAAATGCTTGTCTAGATTGTAGCTCGTTGATTGAGCGAACGACAATAACTAGGACAGTTCAGTTTTGTGATTCTCGTACGCTCATTATTGACTGTGTTGAGATTATCTGTGGTTAAATACAAAAGATATAGCCATATAGGAATGAAACATATGGGCAGCCGCCTGTAACATGCCGAAAATATTCAGTAAAATAAGCGTTGCATCTTAGTTGTGTCTATTCGACTGGATAAAGTTGTGATGCTTTTATAAATTCTTGTCATTGGATAAAATTTCATTTCTTGTACTTGTTCCATGCTATGTTTTTACGCGCTTCCTTCTCGCTTCATTCTTCAGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTGAGTATCATATCTTTATAAGCCTAGAGTCTTATTATGATGCATTGAGATAATTTTGAAATTAAAAGCTTGTTTCTTATCTAGGTCTCTGAAGAGGAGCTTGCCAAGGTGTTCAGGGAGTATTGTGGATATGTAAGTATACTCATTCTTCGGGTTCTGTCATTTTGTCGGGTGGGTGGAAGTCTAGAGTGAATGTAGTTGATTGATGTTTTTAAACGGTGATGTCGAGGTGGGTTGCCACTGGACTCGGTTCTGGCGTTCAATCGTAACTATCGTCTTATTTGCATTCATCTTAATGAAAAGACATGCCATGGGATGATAGCTATTCTTTTATAGGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCTTTTGTGGAGTTCGCTAATGAGCGTAAGTTGATCTTTGCACCTTGAAATTCTTTCCAAGGAGAGATATGTAGTTTGATCTTACATGCCACATGGAATGTTTTGGGAACAGCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTAGGGTCGTATCCAATTAAGGTATTGCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACCTTTCTTCCCAAGGTACGGTGTTATCCTTTCTCTTCCTAAATGGATATATACATATACGTATACATACATACATATATATATATATCTTTATGCTCCCTACAAAATTTCTGTTGTGACAGTCAAATGATGAATGGGACATGTGTACCAGGACTATCTACTGCACAAATATAGATAAGAAGGTACTATTACTTAACTGTTTGAAATGGAATGGAACAATGTTGAACTGATGGGGTTTTAAAATCTTTAATCTTGTGTTGTTTTTTTGTTTATAGGTATCTCAGGTTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAAGATATAAACAGACAGCATATTCGTTTTTCGACGATGTTAACCGACTGTTATTGACAAGAAAATCCTCCTTTTGAATTTAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGTAATCTTTTTCTCTAACGCATTACACTAAGTTCGTCTCGTCTTCTGCTAGTTTTTATTGATAAAGAAGCTCAGTATGAACCTTAGAACATTACATAAAGTTCTTCACTTTGTTGAGATGAATCTCTTTAGCTCTGTTTGTTTCCATGAGCAGGCAGAGACTGCTCTCCAAGCCCTCAACTGTAGTGGCATGATCTTGGGTACTCAGCCAATCAGGTATGGTTTCTTTACTGCTAACACCCTCTCACTTTCCCTACATTAGTTCAGATACATATTTTTTTGTGAAACTTTGTAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCTTAGAAGGCAAATATTCTCCAATATCAGTGGATGAAATTCAGACAGTGTATGAATTGTCCCAAGTGTTGAGAAGTTGGCTAGTTTCTTGGCTGAACTTGTTTATAACTCTTCTTCAGTTATAGTTCATTTGGCTGAGTTCCAATCTTTGACAATTATTTCCCTCCCCGACAAGTTCTTAGTTTTTTCTTTCGATCGCTACTAGTTAATGTTAATGATGTTGGAGTTGTTACTATGTTATGCATTACTTTCATCTCTTGAGTTTTATGTTGCTTGAACAGAGACGTATCAATCAAGAGATTAAAAGTTTATTGAATCC

mRNA sequence

TAATAAGAAACGGACGGCGGCAAAAAGAGGGGGGAGAAACACACCTCTTCACTAACTTTTAAGAGCGATCCAAATCCGAAGAGGAATAAACCCTACGAGAGTTTGGCGTTAATAGGCGAAACCCAAATCCCAATTTCTTTTCTCGATCATTCCATCAAGAGCCCTAGATCACATTCTCTGTTTTTCTTTTAAAAAATCCTTTCTTTTTGCTTCACCTCCTTCCATTTCTGGCCTCTCTCAAATGGGTTCTCTTTATACTTTCTTTTAATGCCAATTGGTGTTTATCCGAGTGGTGGGAATTTACGGATGGACTGAGAGACCTTCTATACTTCCAATTTTGTTTGCTAATTTACTTTGTACTTTGTATATTACATTAACATATACATATATACTTTATATTTCTATTTGCAATTCGGTTTTTTGGCATCTGGGTGTTGATTCTATGGCTGTGGTTGCTGAGGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTGTTCAGGGAGTATTGTGGATATGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCTTTTGTGGAGTTCGCTAATGAGCCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTATCTCAGGTTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGCAGAGACTGCTCTCCAAGCCCTCAACTGTAGTGGCATGATCTTGGGTACTCAGCCAATCAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCTTAGAAGGCAAATATTCTCCAATATCAGTGGATGAAATTCAGACAGTGTATGAATTGTCCCAAGTGTTGAGAAGTTGGCTAGTTTCTTGGCTGAACTTGTTTATAACTCTTCTTCAGTTATAGTTCATTTGGCTGAGTTCCAATCTTTGACAATTATTTCCCTCCCCGACAAGTTCTTAGTTTTTTCTTTCGATCGCTACTAGTTAATGTTAATGATGTTGGAGTTGTTACTATGTTATGCATTACTTTCATCTCTTGAGTTTTATGTTGCTTGAACAGAGACGTATCAATCAAGAGATTAAAAGTTTATTGAATCC

Coding sequence (CDS)

ATGGCTGTGGTTGCTGAGGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTGTTCAGGGAGTATTGTGGATATGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCTTTTGTGGAGTTCGCTAATGAGCCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTATCTCAGGTTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGCAGAGACTGCTCTCCAAGCCCTCAACTGTAGTGGCATGATCTTGGGTACTCAGCCAATCAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCTTAG

Protein sequence

MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPGSIKPS

Homology

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BLAST of Cp4.1LG01g00950 vs. Swiss-Prot
Match: CID9_ARATH (Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana GN=CID9 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.5e-50
Identity = 135/299 (45.15%), Postives = 163/299 (54.52%), Query Frame = 1


Query: 18  DPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPA 77
           D + + +S  D HKL  MF  LNPLAKEFFPS Y             N   +    F PA
Sbjct: 39  DSKTETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPKK---------NNQVAKANQFLPA 98

Query: 78  DQL---------------LHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSD 137
           D                   +DN R+RRN   +QGRRR+  R  +AQ+E+S+ RTVYVSD
Sbjct: 99  DDFETTKKQSGEEFDLDAKKDDNTRKRRN--YSQGRRRLTGRISKAQREDSIRRTVYVSD 158

Query: 138 IDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQ 197
           ID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA++  A  A  L GTM+  
Sbjct: 159 IDQSVTEEGLAGLFSN-CGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGF 218

Query: 198 VEVK-------------NFFETS------------CGEVTRLRL---------------- 257
             V+              F   S            C  + +                   
Sbjct: 219 YPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVT 278

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BLAST of Cp4.1LG01g00950 vs. Swiss-Prot
Match: CID8_ARATH (Polyadenylate-binding protein-interacting protein 8 OS=Arabidopsis thaliana GN=CID8 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.7e-47
Identity = 137/290 (47.24%), Postives = 169/290 (58.28%), Query Frame = 1


Query: 20  EMKPKS--EFDA-HKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQP 79
           ++KPKS  E+D   KL  MF  LNP AKEFFPS            Y  N N+S   +F  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------------YKRNTNQSD--DFVI 97

Query: 80  ADQLLHNDNDR----RRRNDNNNQGRR-RMNNRSIRAQQEESVMRTVYVSDIDKDVSEEE 139
           A +    DN +    RRR +N NQGRR R+  R+ +AQ+E+S+ RTVYVSDID+ V+EE 
Sbjct: 98  AIKPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEG 157

Query: 140 LAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVK----- 199
           LA +F   CG V DCRICGDP+SVLRFAFVEF+++  AR+A  L GTM+    V+     
Sbjct: 158 LAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSK 217

Query: 200 --------NFFETS------------CGEVTRL--------------------RLLGDQL 257
                    F   S            C  V +                     RLLGDQ+
Sbjct: 218 TAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV 277

[Close]

BLAST of Cp4.1LG01g00950 vs. Swiss-Prot
Match: CID13_ARATH (Polyadenylate-binding protein-interacting protein 13 OS=Arabidopsis thaliana GN=CID13 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.7e-30
Identity = 102/265 (38.49%), Postives = 135/265 (50.94%), Query Frame = 1


Query: 32  LAEMFSNLNPLAKEFFPSSYSHHDRPDF---QFYYHNYNRSSMKNFQPADQLLHNDNDRR 91
           L    S+LNP+AKEF PS  +     +F   +F++ N+       F      L       
Sbjct: 59  LKSEISHLNPMAKEFVPSFLAQTHHSEFWGNRFWFTNH-------FPKQTIFLIGQFATM 118

Query: 92  RRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRI 151
           RRN    +GR  +  ++   Q E+ + RTVYVSDID  V+EE+LA +F   CG V DCR+
Sbjct: 119 RRNFG--KGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRM 178

Query: 152 CGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVKNFFETS---------------- 211
           CGD  S+LRFAF+EF +   AR+A   SGTM     ++ F   +                
Sbjct: 179 CGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDE 238

Query: 212 ---CG----------EVTRLRL-------LGDQL---------HSTRIAFVEFAMAETAL 249
              CG          EVT++ L        G+           H TRIAFVEF +AE+A+
Sbjct: 239 LEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAI 298

[Close]

BLAST of Cp4.1LG01g00950 vs. Swiss-Prot
Match: CID12_ARATH (Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana GN=CID12 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 77/161 (47.83%), Postives = 99/161 (61.49%), Query Frame = 1


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ--FYYHNYNRSSMKNFQPADQLLHNDN 87
           D  +L E+ S LNP+AKEF P S +      F   F+  N    +  NF      ++ D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFP-----VNEDG 124

Query: 88  DRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVND 147
             RR+     QG+RRMN R+  AQ+EE + RTVYVSDID+ V+EE+LA +F  + G V D
Sbjct: 125 SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGF-GQVVD 184

Query: 148 CRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVK 187
           CRICGDP+SVLRFAF+EF +E  AR A  LSGTM+    VK
Sbjct: 185 CRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVK 219

[Close]

BLAST of Cp4.1LG01g00950 vs. Swiss-Prot
Match: CID10_ARATH (Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana GN=CID10 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.2e-24
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1


Query: 4   VAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYY 63
           + E + +V     F    +  +  +   LA+ FS LNP+A+EF P S +       Q   
Sbjct: 62  INETAQKVQTLNGFSGNGERDNNGEIKDLADAFSKLNPMAQEFVPPSLARS-----QSGV 121

Query: 64  HNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDI 123
                    NF    +L   ++   RR  +  QG+RRMN R+  AQ+++ + RTVYVSDI
Sbjct: 122 LRNGLGFTNNFAAPPKLADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDI 181

Query: 124 DKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQV 183
           D+ V+EE LA VF   CG V DCR+CGDP+SVLRFAF+EF NE  ARAA  +SGT++   
Sbjct: 182 DQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFY 238

Query: 184 EVK 187
            +K
Sbjct: 242 PLK 238

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BLAST of Cp4.1LG01g00950 vs. TrEMBL
Match: A0A0A0L0A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G076250 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 197/284 (69.37%), Postives = 208/284 (73.24%), Query Frame = 1


Query: 21  MKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPADQL 80
           M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF FYY N NRS  KNFQ ADQL
Sbjct: 1   MNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFHFYYQNNNRSLAKNFQVADQL 60

Query: 81  LHNDNDRRRRNDNNNQGRRRMNN-RSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREY 140
           LH+DN+RRRR + NNQGRRRMNN RS+RAQQEES+ RTVYVSDIDKDVSEEELAKVFRE+
Sbjct: 61  LHSDNNRRRRPEFNNQGRRRMNNNRSVRAQQEESIRRTVYVSDIDKDVSEEELAKVFREF 120

Query: 141 CGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVK------------- 200
           CGYVNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+V    VK             
Sbjct: 121 CGYVNDCRICGDPHSVLRFAFVEFANEHSARAAVGLSGTVVGSYPVKVLPSKTAILPVNP 180

Query: 201 NFFETS------------CGEVTRLRLLG--------------------DQLHSTRIAFV 259
            F   S            C  + +                         DQLHSTRIAFV
Sbjct: 181 TFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFV 240

[Close]

BLAST of Cp4.1LG01g00950 vs. TrEMBL
Match: M5WGQ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009298mg PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.1e-66
Identity = 163/307 (53.09%), Postives = 194/307 (63.19%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFD------PEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHH 60
           MA VAE S E A+ KN +      P  + KSEFD  KL +MF+ LNPLAKEFFPSSYSHH
Sbjct: 1   MAAVAEISGEAASVKNSNLDSMSKPMSESKSEFDVQKLVDMFTKLNPLAKEFFPSSYSHH 60

Query: 61  DRPDFQFYYHNYNRSSMKNFQPADQLLHNDN--DRRRRNDNNNQGRRRMNNRSIRAQQEE 120
              +F       N  ++ N    ++L  NDN  + RRR ++ NQG+RR++ R+ RA++E 
Sbjct: 61  QHSNFD------NSLAVNN----NKLSANDNLANNRRRRNSFNQGKRRLSGRAFRAEREN 120

Query: 121 SVMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAA 180
           S+ RTVYVSDID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA+E  ARAA
Sbjct: 121 SIRRTVYVSDIDQQVTEERLAAIFSS-CGQVVDCRICGDPHSVLRFAFVEFADEHGARAA 180

Query: 181 TGLSGTMVSQVEVK-------------NFF------------------------------ 240
             L GTM+    V+              F                               
Sbjct: 181 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVSQAEVKN 240

Query: 241 --ETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPV 255
             ET+CGEVTRLRLLGD +HSTRIAFVEFAMAE+A+ ALNCSGM+LGTQPIRVSPSKTPV
Sbjct: 241 FFETACGEVTRLRLLGDHVHSTRIAFVEFAMAESAILALNCSGMVLGTQPIRVSPSKTPV 296

[Close]

BLAST of Cp4.1LG01g00950 vs. TrEMBL
Match: W9RDQ8_9ROSA (Splicing regulatory glutamine/lysine-rich protein 1 OS=Morus notabilis GN=L484_024606 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 164/307 (53.42%), Postives = 192/307 (62.54%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPK----SEF-DAHKLAEMFSNLNPLAKEFFPSSYSHHD 60
           MA   E S E AAAKN     + K    SEF +  KL EMF+ LNPLAKEFFPSS  + +
Sbjct: 1   MAAGPEISGEAAAAKNESNSEEVKKSEESEFCNVEKLVEMFTKLNPLAKEFFPSSKQNRN 60

Query: 61  RPDFQFYYHNYNRSSMKNFQPAD---QLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEE 120
             D      + N ++   F  ++   +L  NDN+RRRRN N NQGRRR+N R+ RAQ+E 
Sbjct: 61  LND------DNNNNTFYQFDSSEANYKLSVNDNNRRRRN-NFNQGRRRLNGRNFRAQREN 120

Query: 121 SVMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAA 180
           SV RTVYVSDID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA+E  ARAA
Sbjct: 121 SVRRTVYVSDIDQQVTEERLAALFSG-CGQVVDCRICGDPHSVLRFAFVEFADEHGARAA 180

Query: 181 TGLSGTMVSQV---------------------------------------------EVKN 240
             L GT++                                                EVK 
Sbjct: 181 LNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQTEVKT 240

Query: 241 FFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPV 255
           FFE++CGEVTR+RLLGD +HSTRIAFVEFAMAE+A+ ALNCSGM+LGTQPIRVSPSKTPV
Sbjct: 241 FFESACGEVTRIRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMVLGTQPIRVSPSKTPV 299

[Close]

BLAST of Cp4.1LG01g00950 vs. TrEMBL
Match: A0A151SW21_CAJCA (Splicing factor, arginine/serine-rich 12 OS=Cajanus cajan GN=KK1_014410 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 6.0e-62
Identity = 155/303 (51.16%), Postives = 189/303 (62.38%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAE   +   A   D + K +SEF   KL +MF+ LNPLAKEFFPSSYS    P+  
Sbjct: 1   MAAVAEIPAD---ANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYS----PNHD 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDN--DRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTV 120
                +N+ S  +F  + +   +DN  + RRR +  NQGRRR++ RS++AQ+E+S+ RTV
Sbjct: 61  HRLQGFNQLSPTHFLVSTKPSADDNFPNNRRRRNGFNQGRRRLSGRSLKAQREDSIRRTV 120

Query: 121 YVSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGT 180
           YVSDID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA+E  AR A  L GT
Sbjct: 121 YVSDIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGT 180

Query: 181 MVSQVEVK-------------NFF--------------------------------ETSC 240
           ++    V+              F                                 E++C
Sbjct: 181 VLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESAC 240

Query: 241 GEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTR 257
           GEVTRLRLLGD +HSTRIAFVEFAMAE+A+ ALNCSGM+LGTQPIRVSPSKTPVRPRVTR
Sbjct: 241 GEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTR 295

[Close]

BLAST of Cp4.1LG01g00950 vs. TrEMBL
Match: V4TZY3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021336mg PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.9e-62
Identity = 155/307 (50.49%), Postives = 191/307 (62.21%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFDPEM-------KPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSH 60
           MA VA+   + AAA N +          K +SEF   KL +MF+ LNPLAKEFFPS Y  
Sbjct: 1   MAAVADMPGDAAAANNTNNSKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60

Query: 61  HDRPDFQFYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEES 120
           H    F    +N+   + ++       + N N+ RRR +N NQGR+R++ R+ RAQ+E+S
Sbjct: 61  HTDHHFSVINNNFADDNKQS------AIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDS 120

Query: 121 VMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAAT 180
           V RTVYVSDID++++EE LA +F   CG V DCR+CGDPHSVLRFAFVEFA+E  ARAA 
Sbjct: 121 VRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 180

Query: 181 GLSGTMV------------------------SQVE---------------------VKNF 240
            L GTM+                        S+ E                     VK F
Sbjct: 181 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 240

Query: 241 FETSC-GEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPV 255
           FE +C GEVTRLRLLGD +HSTRIAFVEFA+AE+A+ ALNCSGM+LG+QPIRVSPSKTPV
Sbjct: 241 FEAACGGEVTRLRLLGDHVHSTRIAFVEFAVAESAILALNCSGMVLGSQPIRVSPSKTPV 300

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR10
Match: AT3G14450.1 (AT3G14450.1 CTC-interacting domain 9)

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-51
Identity = 135/299 (45.15%), Postives = 163/299 (54.52%), Query Frame = 1


Query: 18  DPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPA 77
           D + + +S  D HKL  MF  LNPLAKEFFPS Y             N   +    F PA
Sbjct: 39  DSKTETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPKK---------NNQVAKANQFLPA 98

Query: 78  DQL---------------LHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSD 137
           D                   +DN R+RRN   +QGRRR+  R  +AQ+E+S+ RTVYVSD
Sbjct: 99  DDFETTKKQSGEEFDLDAKKDDNTRKRRN--YSQGRRRLTGRISKAQREDSIRRTVYVSD 158

Query: 138 IDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQ 197
           ID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA++  A  A  L GTM+  
Sbjct: 159 IDQSVTEEGLAGLFSN-CGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGF 218

Query: 198 VEVK-------------NFFETS------------CGEVTRLRL---------------- 257
             V+              F   S            C  + +                   
Sbjct: 219 YPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVT 278

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR10
Match: AT1G53650.1 (AT1G53650.1 CTC-interacting domain 8)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 137/290 (47.24%), Postives = 169/290 (58.28%), Query Frame = 1


Query: 20  EMKPKS--EFDA-HKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQP 79
           ++KPKS  E+D   KL  MF  LNP AKEFFPS            Y  N N+S   +F  
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------------YKRNTNQSD--DFVI 97

Query: 80  ADQLLHNDNDR----RRRNDNNNQGRR-RMNNRSIRAQQEESVMRTVYVSDIDKDVSEEE 139
           A +    DN +    RRR +N NQGRR R+  R+ +AQ+E+S+ RTVYVSDID+ V+EE 
Sbjct: 98  AIKPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEG 157

Query: 140 LAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVK----- 199
           LA +F   CG V DCRICGDP+SVLRFAFVEF+++  AR+A  L GTM+    V+     
Sbjct: 158 LAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSK 217

Query: 200 --------NFFETS------------CGEVTRL--------------------RLLGDQL 257
                    F   S            C  V +                     RLLGDQ+
Sbjct: 218 TAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV 277

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR10
Match: AT5G24440.1 (AT5G24440.1 CTC-interacting domain 13)

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-31
Identity = 102/265 (38.49%), Postives = 135/265 (50.94%), Query Frame = 1


Query: 32  LAEMFSNLNPLAKEFFPSSYSHHDRPDF---QFYYHNYNRSSMKNFQPADQLLHNDNDRR 91
           L    S+LNP+AKEF PS  +     +F   +F++ N+       F      L       
Sbjct: 59  LKSEISHLNPMAKEFVPSFLAQTHHSEFWGNRFWFTNH-------FPKQTIFLIGQFATM 118

Query: 92  RRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRI 151
           RRN    +GR  +  ++   Q E+ + RTVYVSDID  V+EE+LA +F   CG V DCR+
Sbjct: 119 RRNFG--KGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRM 178

Query: 152 CGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVKNFFETS---------------- 211
           CGD  S+LRFAF+EF +   AR+A   SGTM     ++ F   +                
Sbjct: 179 CGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDE 238

Query: 212 ---CG----------EVTRLRL-------LGDQL---------HSTRIAFVEFAMAETAL 249
              CG          EVT++ L        G+           H TRIAFVEF +AE+A+
Sbjct: 239 LEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAI 298

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR10
Match: AT4G10610.1 (AT4G10610.1 CTC-interacting domain 12)

HSP 1 Score: 114.8 bits (286), Expect = 8.1e-26
Identity = 77/161 (47.83%), Postives = 99/161 (61.49%), Query Frame = 1


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ--FYYHNYNRSSMKNFQPADQLLHNDN 87
           D  +L E+ S LNP+AKEF P S +      F   F+  N    +  NF      ++ D 
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFP-----VNEDG 124

Query: 88  DRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREYCGYVND 147
             RR+     QG+RRMN R+  AQ+EE + RTVYVSDID+ V+EE+LA +F  + G V D
Sbjct: 125 SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGF-GQVVD 184

Query: 148 CRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVK 187
           CRICGDP+SVLRFAF+EF +E  AR A  LSGTM+    VK
Sbjct: 185 CRICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVK 219

[Close]

BLAST of Cp4.1LG01g00950 vs. TAIR10
Match: AT3G49390.1 (AT3G49390.1 CTC-interacting domain 10)

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-25
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1


Query: 4   VAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYY 63
           + E + +V     F    +  +  +   LA+ FS LNP+A+EF P S +       Q   
Sbjct: 62  INETAQKVQTLNGFSGNGERDNNGEIKDLADAFSKLNPMAQEFVPPSLARS-----QSGV 121

Query: 64  HNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDI 123
                    NF    +L   ++   RR  +  QG+RRMN R+  AQ+++ + RTVYVSDI
Sbjct: 122 LRNGLGFTNNFAAPPKLADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDI 181

Query: 124 DKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQV 183
           D+ V+EE LA VF   CG V DCR+CGDP+SVLRFAF+EF NE  ARAA  +SGT++   
Sbjct: 182 DQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFY 238

Query: 184 EVK 187
            +K
Sbjct: 242 PLK 238

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: gi|449438949|ref|XP_004137250.1| (PREDICTED: polyadenylate-binding protein-interacting protein 9 [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 2.1e-100
Identity = 212/304 (69.74%), Postives = 224/304 (73.68%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAEDS+E AA KNFDP M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF 
Sbjct: 1   MAAVAEDSSEAAAVKNFDPNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFH 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRM-NNRSIRAQQEESVMRTVY 120
           FYY N NRS  KNFQ ADQLLH+DN+RRRR + NNQGRRRM NNRS+RAQQEES+ RTVY
Sbjct: 61  FYYQNNNRSLAKNFQVADQLLHSDNNRRRRPEFNNQGRRRMNNNRSVRAQQEESIRRTVY 120

Query: 121 VSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAKVFRE+CGYVNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAVGLSGTV 180

Query: 181 VSQVEVK-------------NFFETS------------CGEVTRLRLLG----------- 240
           V    VK              F   S            C  + +                
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 ---------DQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRP 259
                    DQLHSTRIAFVEFA+AETALQALNCSGMILG QPIRVSPSKTPVRPRVTRP
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRP 300

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: gi|659101793|ref|XP_008451796.1| (PREDICTED: polyadenylate-binding protein-interacting protein 9 isoform X1 [Cucumis melo])

HSP 1 Score: 371.3 bits (952), Expect = 1.4e-99
Identity = 212/304 (69.74%), Postives = 223/304 (73.36%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAEDS+E AA KNFD  M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF 
Sbjct: 1   MAAVAEDSSEAAAVKNFDHNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFH 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRM-NNRSIRAQQEESVMRTVY 120
           FYY N NRS  KNFQ ADQLLH+DN+RRRR D NNQGRRRM NNRS+RAQQEES+ RTVY
Sbjct: 61  FYYQNNNRSLAKNFQVADQLLHSDNNRRRRPDFNNQGRRRMNNNRSVRAQQEESIRRTVY 120

Query: 121 VSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAKVFRE+CGYVNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTV 180

Query: 181 VSQVEVK-------------NFFETS------------CGEVTRLRLLG----------- 240
           V    VK              F   S            C  + +                
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 ---------DQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRP 259
                    DQLHSTRIAFVEFA+AETALQALNCSGMILG QPIRVSPSKTPVRPRVTRP
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRP 300

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: gi|700198388|gb|KGN53546.1| (hypothetical protein Csa_4G076250 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 3.6e-92
Identity = 197/284 (69.37%), Postives = 208/284 (73.24%), Query Frame = 1


Query: 21  MKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPADQL 80
           M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF FYY N NRS  KNFQ ADQL
Sbjct: 1   MNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFHFYYQNNNRSLAKNFQVADQL 60

Query: 81  LHNDNDRRRRNDNNNQGRRRMNN-RSIRAQQEESVMRTVYVSDIDKDVSEEELAKVFREY 140
           LH+DN+RRRR + NNQGRRRMNN RS+RAQQEES+ RTVYVSDIDKDVSEEELAKVFRE+
Sbjct: 61  LHSDNNRRRRPEFNNQGRRRMNNNRSVRAQQEESIRRTVYVSDIDKDVSEEELAKVFREF 120

Query: 141 CGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVSQVEVK------------- 200
           CGYVNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+V    VK             
Sbjct: 121 CGYVNDCRICGDPHSVLRFAFVEFANEHSARAAVGLSGTVVGSYPVKVLPSKTAILPVNP 180

Query: 201 NFFETS------------CGEVTRLRLLG--------------------DQLHSTRIAFV 259
            F   S            C  + +                         DQLHSTRIAFV
Sbjct: 181 TFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFV 240

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: gi|659101795|ref|XP_008451797.1| (PREDICTED: polyadenylate-binding protein-interacting protein 9 isoform X2 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 1.1e-77
Identity = 174/264 (65.91%), Postives = 184/264 (69.70%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VAEDS+E AA KNFD  M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF 
Sbjct: 1   MAAVAEDSSEAAAVKNFDHNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFH 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRM-NNRSIRAQQEESVMRTVY 120
           FYY N NRS  KNFQ ADQLLH+DN+RRRR D NNQGRRRM NNRS+RAQQEES+ RTVY
Sbjct: 61  FYYQNNNRSLAKNFQVADQLLHSDNNRRRRPDFNNQGRRRMNNNRSVRAQQEESIRRTVY 120

Query: 121 VSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAKVFRE+CGYVNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTV 180

Query: 181 VSQVEVK-------------NFFETS------------CGEVTRLRLLG----------- 219
           V    VK              F   S            C  + +                
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

[Close]

BLAST of Cp4.1LG01g00950 vs. NCBI nr
Match: gi|595864073|ref|XP_007211705.1| (hypothetical protein PRUPE_ppa009298mg [Prunus persica])

HSP 1 Score: 261.5 bits (667), Expect = 1.5e-66
Identity = 163/307 (53.09%), Postives = 194/307 (63.19%), Query Frame = 1


Query: 1   MAVVAEDSTEVAAAKNFD------PEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHH 60
           MA VAE S E A+ KN +      P  + KSEFD  KL +MF+ LNPLAKEFFPSSYSHH
Sbjct: 1   MAAVAEISGEAASVKNSNLDSMSKPMSESKSEFDVQKLVDMFTKLNPLAKEFFPSSYSHH 60

Query: 61  DRPDFQFYYHNYNRSSMKNFQPADQLLHNDN--DRRRRNDNNNQGRRRMNNRSIRAQQEE 120
              +F       N  ++ N    ++L  NDN  + RRR ++ NQG+RR++ R+ RA++E 
Sbjct: 61  QHSNFD------NSLAVNN----NKLSANDNLANNRRRRNSFNQGKRRLSGRAFRAEREN 120

Query: 121 SVMRTVYVSDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAA 180
           S+ RTVYVSDID+ V+EE LA +F   CG V DCRICGDPHSVLRFAFVEFA+E  ARAA
Sbjct: 121 SIRRTVYVSDIDQQVTEERLAAIFSS-CGQVVDCRICGDPHSVLRFAFVEFADEHGARAA 180

Query: 181 TGLSGTMVSQVEVK-------------NFF------------------------------ 240
             L GTM+    V+              F                               
Sbjct: 181 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVSQAEVKN 240

Query: 241 --ETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPV 255
             ET+CGEVTRLRLLGD +HSTRIAFVEFAMAE+A+ ALNCSGM+LGTQPIRVSPSKTPV
Sbjct: 241 FFETACGEVTRLRLLGDHVHSTRIAFVEFAMAESAILALNCSGMVLGTQPIRVSPSKTPV 296

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CID9_ARATH	4.5e-50	45.15	Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana GN=C...	[more]
CID8_ARATH	2.7e-47	47.24	Polyadenylate-binding protein-interacting protein 8 OS=Arabidopsis thaliana GN=C...	[more]
CID13_ARATH	6.7e-30	38.49	Polyadenylate-binding protein-interacting protein 13 OS=Arabidopsis thaliana GN=...	[more]
CID12_ARATH	1.4e-24	47.83	Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana GN=...	[more]
CID10_ARATH	7.2e-24	40.98	Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana GN=...	[more]

BLAST of Cp4.1LG01g00950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0A8_CUCSA	2.5e-92	69.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G076250 PE=4 SV=1	[more]
M5WGQ0_PRUPE	1.1e-66	53.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009298mg PE=4 SV=1	[more]
W9RDQ8_9ROSA	1.4e-63	53.42	Splicing regulatory glutamine/lysine-rich protein 1 OS=Morus notabilis GN=L484_0...	[more]
A0A151SW21_CAJCA	6.0e-62	51.16	Splicing factor, arginine/serine-rich 12 OS=Cajanus cajan GN=KK1_014410 PE=4 SV=...	[more]
V4TZY3_9ROSI	7.9e-62	50.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021336mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00950 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14450.1	2.5e-51	45.15	CTC-interacting domain 9	[more]
AT1G53650.1	1.5e-48	47.24	CTC-interacting domain 8	[more]
AT5G24440.1	3.8e-31	38.49	CTC-interacting domain 13	[more]
AT4G10610.1	8.1e-26	47.83	CTC-interacting domain 12	[more]
AT3G49390.1	4.0e-25	40.98	CTC-interacting domain 10	[more]

BLAST of Cp4.1LG01g00950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438949\|ref\|XP_004137250.1\|	2.1e-100	69.74	PREDICTED: polyadenylate-binding protein-interacting protein 9 [Cucumis sativus]	[more]
gi\|659101793\|ref\|XP_008451796.1\|	1.4e-99	69.74	PREDICTED: polyadenylate-binding protein-interacting protein 9 isoform X1 [Cucum...	[more]
gi\|700198388\|gb\|KGN53546.1\|	3.6e-92	69.37	hypothetical protein Csa_4G076250 [Cucumis sativus]	[more]
gi\|659101795\|ref\|XP_008451797.1\|	1.1e-77	65.91	PREDICTED: polyadenylate-binding protein-interacting protein 9 isoform X2 [Cucum...	[more]
gi\|595864073\|ref\|XP_007211705.1\|	1.5e-66	53.09	hypothetical protein PRUPE_ppa009298mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR009818	Ataxin-2_C
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00950.1	Cp4.1LG01g00950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 118..180 score: 2.6E-10coord: 181..238 score: 4.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 117..184 score: 1.2E-7coord: 185..241 score:
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 181..245 score: 9.32coord: 116..190 score: 12
IPR009818	Ataxin-2, C-terminal	PFAM	PF07145	PAM2	coord: 35..51 score: 4.
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 87..180 score: 4.5E-14coord: 181..246 score: 1.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 86..174 score: 6.52E-15coord: 180..253 score: 4.34

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00950	Cucsa.273320	Cucumber (Gy14) v1	cgycpeB0718
Cp4.1LG01g00950	CmaCh16G004580	Cucurbita maxima (Rimu)	cmacpeB353
Cp4.1LG01g00950	CmaCh04G006450	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00950	CmoCh16G004930	Cucurbita moschata (Rifu)	cmocpeB315
Cp4.1LG01g00950	CmoCh04G006930	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00950	Cla005403	Watermelon (97103) v1	cpewmB419
Cp4.1LG01g00950	MELO3C016159	Melon (DHL92) v3.5.1	cpemeB423
Cp4.1LG01g00950	ClCG07G010530	Watermelon (Charleston Gray)	cpewcgB411
Cp4.1LG01g00950	Lsi07G003190	Bottle gourd (USVL1VR-Ls)	cpelsiB381
Cp4.1LG01g00950	Lsi07G008490	Bottle gourd (USVL1VR-Ls)	cpelsiB372
Cp4.1LG01g00950	MELO3C016159.2	Melon (DHL92) v3.6.1	cpemedB495
Cp4.1LG01g00950	Bhi01G002430	Wax gourd	cpewgoB0509
Cp4.1LG01g00950	Carg13105	Silver-seed gourd	carcpeB0061
Cp4.1LG01g00950	Carg11383	Silver-seed gourd	carcpeB0929

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g00950	Cp4.1LG14g03240	Cucurbita pepo (Zucchini)	cpecpeB236

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00950	Cucumber (Chinese Long) v3	cpecucB0496
Cp4.1LG01g00950	Wild cucumber (PI 183967)	cpecpiB396
Cp4.1LG01g00950	Cucumber (Chinese Long) v2	cpecuB399
Cp4.1LG01g00950	Cucumber (Gy14) v2	cgybcpeB501
Cp4.1LG01g00950	Melon (DHL92) v3.6.1	cpemedB491