Carg13105 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13105
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Polyadenylate-binding protein
Location	Cucurbita_argyrosperma_scaffold_101 : 326344 .. 330350 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAGAGCGATCCAAATCCGAAGAGGAATAAACCCTACGAGAGTTTGGCGTTAATAGGCGAAACCCAAATCCCAATTCCTATTCTCGATCATTCCATCAAGAGCCCTAGATCACATTCTCTGTTTTTCTTTTAAAAAATCCTTTCTTTTTGCTTCACCTCCTTCCATTTCTGGCCTCTCTCAAATGGGTTCTCTTTATACTTTCTTTTAATGCCAATTGGTGTTTATCCGAGTGGTGGGAATTTACGGATGGACTGAGAGACCTTCTCCACTTCAATTTTGTTTGCTAATTTACTTTGTACTTTGTATATTACATTAACATATACATATATACTTTACATTTCTATTTTCAATTCGGTTTTTTGGCATCTGGGTGTTGATTCAATGGCTGTGGTTGCTGACGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGGTATTCTTTTATTTTGATCTGCTTTTTTTTTTGTTCTTATTTAGAGCTTGATGTCGAGATTCAATCCGTGATTCTGTTTGATCTGGGATTATTTTTGTTCTTGTTGATTGATTTTGAGTTAATGTGTGTGTGTTTTAATGTGATGAATTTTGCTCCGGGGTGTCTGGATCAAATTCCTGGAAAGGATCATTGTGCTATTCGATTTATTTAATGTCTCTTGACACTGAAAATTATTGAGATGTCTAAATTCAATCCATAGTTTCATTGCCAGAATTGGATTGAATTATACTTTTTGCTTCATCAGGGATTGTTTGTTCTTACTGATTGATTCCAAGTTAATGTATGTATGTTTGTAATGTGGTGAAATTCACTCTTGTGATGGGAATTTTTCCTAATTGAGTAATTGGAATTGTTCACTGTGCTATTGGTATTATTTACCGTTCTTGACTCTGAAAATTATTTTAGCAATCTGTGTGTGTTGATCACTTCCCATGACAACTGAATTGTACTGCAACTTTTAGGAATCATATCATGTAATTGACTGCTATAGTTTTCTATCACATTCAGCTCAGTTCACATCTCCGAACGAGAATTTTATGGTTCGGATTCTTGATAATACTGGCCATTCCTGTTTTGATTTGTCTGATTCACCTTCCAATTATCTATTAAATCACCTCAGATCTGTTTGGTATAATGATAACTCGTCATTATCTGTTTATGTTGCTACAAGTCTTTTATTTTTGCGAATGATATATCGATTCTTACTTCTTTTCCCATAACTTCTAAAGAATTTATCAAGAGATCCATATGCTTTTATGTTACTTTCTGTTTGTTACTGATACACCCTGGTCTACTCGCTTTCCTTGCAAATTTACTTAATGGGGATGTTCTCATTTAATACTTTAGATTCCAACGTCCCGACTGTCTTGAGGTTACTTGGAACGATAAATGTAACTATATTATTATCCGCCTCAATCCTAAGAAATAATCAAAATACATGCTTCATCATATTGTCTTACGTTCTTGTCTCTGCGTTAGACGCTTACCCTGTTTTAGTTTTCTCGTGTCCAGTATTAGGATCTTAAGACCGATAAATTTCACTCAAGGTTTGTGCTGGGCACTTGAACTTGGATTATTAGCCTATCTTCTATACAAGTTACCTCGATTACTTTAGTGTTGTTAAGTACTAAAATAGTATGAAAATGCTTGTCTAGATTGTAGCTCGTTGATAGATCGAACGATAATAACTAGGACAGTTCAGTTTTGTGATTCTCGTACGCTCATTATTGACTGTGTTGAGATTATCTGTGGTTAAATACAAAAGATATAGCCATCTTGGAATGAAACATATGGGTAGCCGCCTGTAACATGCCGAAAATATTCAGTAAAATAAGCCTTGCATCTTAGTTGTGTCTATTCGACTTGATAAAGTTGTGATGCTTTTATAAATTCTTGTCATTGGATAAAATTTCATTTCTTGTACTTGTTCTATGCTATGTTTTTACGCGCTTCCTTCTCGCTTCATTCTTCAGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTGAGTATCATATCTTTACAAGCCTAGAGTCTTATTATGATGCATTGAGATAATTTTGAAATTAAAATCTTGTTTCTAATCTAGGTCTCTGAAGAGGAGCTTGCCAAGGTATTCAGGGAGTATTGTGGATATGTAAGTATATTCATTCTTCGGGTTCTATCATTTTGTCGGGAGGGTGGAAGTCTAGAGTGAATGTAGTTGATTGATGTTTTTAAACGGGGATGTCGAGGTGGGTTGCCACTGGACTCGATTCTGGCTTTCAACTCGTAACTATCGTCTTATTTGCATTCTTCTTAATGAAAAGACATGGTTTTTTGTTTAATTTATATTGGCCATGGGATGATAGCTATTCTTTTATAGGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCGTTTGTGGAGTTCGCTAATGAACGTAAGTTGATCTTTGCACCTTGAAATTCTTTCCAAGGAGAGATATATAGTTTGATCTTACATGCCACCTGGAATGTTTTGGGAACAGCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTAGGGTCGTATCCGATTAAGGTATTGCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACCTTTCTTCCCAAGGTACGGTGTTATCCTTTCTCTTCCTATATGGATATATACATATATGTATACGTATATATATATATTTATGCTCCCTACAAAATGTCTCTTGTGACAGTCAAATGATGAATGGGATATGTGTACCAGGACTATCTACTGCACAAATATAGATAAGAAGGTACTATTACATACTCAAGTGTTTCAAATGGAATGGATCAATGTTGAACTGATGGGGTTTTAAAATCTTTAATCTTGTTTTGTTTTTTTGTTTATAGGTATCTCAGATTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAAGATATAAACAGACAGCAAATTCGTTTTTTCGACGATTTTAACCGACTGTTATTGACAAGAAAATCTTCCTTTGAATTTAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGTAATCTTTTTCTGTAACGCATTACACTAAGTTCGTCTCGTCTTATGCTAGTTTTTATTGACAAAGAAGCTCAGTATGAACCTTAGAACATTACATAAAGTTCTTCACTTTGTTGAGATCAATCTCTTTAGCTCTGTTTGTTTCCATGAGCAGGCAGAGACTGCTCTCCAAGCCCTCAACTGCAGTGGCATGATCTTGGGTACTCAGCCAATCAGGTATGGTTTCTTTACTGCTAACACCCTCTCACTTTCCCTACATTAGTTCAGATACATATTTTTTTGTGAAACTTTGTAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCGTAGTAGAAGGCAAATATTCTCCAATATCAGTGTTGAGAAGTTGGCTAGTTTCTTGGCTGAACTTGTTTATAACTCTTCTTCAATTATAGTTCATTTGGCTGAGTTCCAATCTTTGACAATTATTTCCCTCCCCGACAAGTTCTGTCTTAGTTTTTTCTTTCGATCGCTACTAGTTAATGTTAATGTTGTTGGAGTTGTTACTATGTTATGCATTACTTTCATCTCTTGAGTTTTATGTTGCTTGAACATAGACGTATCAATCAAGAGA

mRNA sequence

TTAAGAGCGATCCAAATCCGAAGAGGAATAAACCCTACGAGAGTTTGGCGTTAATAGGCGAAACCCAAATCCCAATTCCTATTCTCGATCATTCCATCAAGAGCCCTAGATCACATTCTCTGTTTTTCTTTTAAAAAATCCTTTCTTTTTGCTTCACCTCCTTCCATTTCTGGCCTCTCTCAAATGGGTTCTCTTTATACTTTCTTTTAATGCCAATTGGTGTTTATCCGAGTGGTGGGAATTTACGGATGGACTGAGAGACCTTCTCCACTTCAATTTTGTTTGCTAATTTACTTTGTACTTTGTATATTACATTAACATATACATATATACTTTACATTTCTATTTTCAATTCGGTTTTTTGGCATCTGGGTGTTGATTCAATGGCTGTGGTTGCTGACGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCGTTTGTGGAGTTCGCTAATGAACCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTAGGGTCGTATCCGATTAAGGTATTGCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACCTTTCTTCCCAAGTCAAATGATGAATGGGATATGTGTACCAGGACTATCTACTGCACAAATATAGATAAGAAGGTATCTCAGATTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGCAGAGACTGCTCTCCAAGCCCTCAACTGCAGTGGCATGATCTTGGGTACTCAGCCAATCAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCGTAGTAGAAGGCAAATATTCTCCAATATCAGTGTTGAGAAGTTGGCTAGTTTCTTGGCTGAACTTGTTTATAACTCTTCTTCAATTATAGTTCATTTGGCTGAGTTCCAATCTTTGACAATTATTTCCCTCCCCGACAAGTTCTGTCTTAGTTTTTTCTTTCGATCGCTACTAGTTAATGTTAATGTTGTTGGAGTTGTTACTATGTTATGCATTACTTTCATCTCTTGAGTTTTATGTTGCTTGAACATAGACGTATCAATCAAGAGA

Coding sequence (CDS)

ATGGCTGTGGTTGCTGACGATTCCACTGAGGTAGCGGCTGCCAAGAATTTTGATCCGGAGATGAAACCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTTAGCAATTTGAACCCTTTGGCTAAGGAGTTCTTTCCTTCCTCTTACTCTCATCATGATCGCCCAGATTTTCAATTTTATTATCACAACTATAATCGATCCTCCATGAAAAACTTTCAGCCCGCCGATCAACTGTTGCACAATGATAACGATCGCAGGAGAAGAAATGACAATAATAACCAGGGGAGAAGAAGAATGAATAATAGATCTATCAGAGCTCAGCAAGAGGAAAGTGTAATGAGGACTGTTTATGTCTCTGATATTGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTTAATGATTGCCGAATTTGTGGCGACCCCCATTCAGTTCTTCGTTTCGCGTTTGTGGAGTTCGCTAATGAACCTAGTGCTAGAGCAGCCACGGGGCTGAGCGGGACGATGGTAGGGTCGTATCCGATTAAGGTATTGCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACCTTTCTTCCCAAGTCAAATGATGAATGGGATATGTGTACCAGGACTATCTACTGCACAAATATAGATAAGAAGGTATCTCAGATTGAAGTTAAGAATTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATTGCGTTTGTCGAGTTTGCTATGGCAGAGACTGCTCTCCAAGCCCTCAACTGCAGTGGCATGATCTTGGGTACTCAGCCAATCAGGGTAAGTCCTTCGAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGAAGCATTAAGCCATCGTAG

Protein sequence

MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPADQLLHNDNDRRRRNDNNNQGRRRMNNRSIRAQQEESVMRTVYVSDIDKDVSEEELAKVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPGSIKPS

Homology

[Close]

BLAST of Carg13105 vs. NCBI nr
Match: XP_022942237.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata] >XP_022942238.1 polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata])

HSP 1 Score: 515.0 bits (1325), Expect = 1.7e-142
Identity = 297/305 (97.38%), Postives = 297/305 (97.38%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV 120

Query: 121 SDIDKDVSEEELAK--------VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAK        VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240
           GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 298
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Carg13105 vs. NCBI nr
Match: XP_023531181.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 513.1 bits (1320), Expect = 6.5e-142
Identity = 295/305 (96.72%), Postives = 297/305 (97.38%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVA+DSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVAEDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV 120

Query: 121 SDIDKDVSEEELAK--------VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAK        VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240
           GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQ+EVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQVEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 298
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Carg13105 vs. NCBI nr
Match: XP_022982064.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita maxima])

HSP 1 Score: 507.7 bits (1306), Expect = 2.7e-140
Identity = 294/305 (96.39%), Postives = 296/305 (97.05%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MAVVA+DS+EVAAAKNFDPEMKPKSEFDA KLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ
Sbjct: 1   MAVVAEDSSEVAAAKNFDPEMKPKSEFDALKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV 120
           FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV
Sbjct: 61  FYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYV 120

Query: 121 SDIDKDVSEEELAK--------VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180
           SDIDKDVSEEELAK        VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV
Sbjct: 121 SDIDKDVSEEELAKVFREYCGYVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMV 180

Query: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240
           GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE
Sbjct: 181 GSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGE 240

Query: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 298
           VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG
Sbjct: 241 VTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPG 300

[Close]

BLAST of Carg13105 vs. NCBI nr
Match: XP_022984913.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita maxima])

HSP 1 Score: 451.4 bits (1160), Expect = 2.3e-123
Identity = 262/306 (85.62%), Postives = 273/306 (89.22%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VA++S E AAAKNFDP+MKPKS+FDA+ LAEMFSNLNPLAKEFFPSSYSHHDR DFQ
Sbjct: 1   MAAVAENSGEAAAAKNFDPQMKPKSQFDANNLAEMFSNLNPLAKEFFPSSYSHHDRQDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVY 120
           FYY N  RSS K FQ ADQLL        XXXXXXXXXXXXXXXXXXXXXXXX + RTVY
Sbjct: 61  FYYQNNTRSSAKAFQVADQLLDGDINRRRXXXXXXXXXXXXXXXXXXXXXXXXSIRRTVY 120

Query: 121 VSDIDKDVSEEELAK--------VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAK        VNDCRICGDPHSVLRFAFVEFANE SAR A GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARTAIGLSGTV 180

Query: 181 VGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCG 240
           VGSYP+KVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQ EVK+FFETSCG
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRP 298
           EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILG+QPIRVSPSKTPVRPRVTRP
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGSQPIRVSPSKTPVRPRVTRP 300

[Close]

BLAST of Carg13105 vs. NCBI nr
Match: XP_022931470.1 (polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata] >XP_023553146.1 polyadenylate-binding protein-interacting protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.5 bits (1155), Expect = 8.8e-123
Identity = 261/306 (85.29%), Postives = 272/306 (88.89%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VA++S E AAAKNFDP+MKPKS+FDA+ LAEMFSNLNPLAKEFFPSSYSHHDR DFQ
Sbjct: 1   MAAVAENSGEAAAAKNFDPQMKPKSQFDANNLAEMFSNLNPLAKEFFPSSYSHHDRQDFQ 60

Query: 61  FYYHNYNRSSMKNFQPADQLLH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVY 120
           FYY N  RSS K F  ADQLL        XXXXXXXXXXXXXXXXXXXXXXXX + RTVY
Sbjct: 61  FYYQNNTRSSAKAFHVADQLLDGDINRRRXXXXXXXXXXXXXXXXXXXXXXXXSIRRTVY 120

Query: 121 VSDIDKDVSEEELAK--------VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAK        VNDCRICGDPHSVLRFAFVEFANE SAR A GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARTAIGLSGTV 180

Query: 181 VGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCG 240
           VGSYP+KVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQ EVK+FFETSCG
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRP 298
           EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILG+QPIRVSPSKTPVRPRVTRP
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGSQPIRVSPSKTPVRPRVTRP 300

[Close]

BLAST of Carg13105 vs. TAIR10
Match: AT3G14450.1 (CTC-interacting domain 9)

HSP 1 Score: 301.2 bits (770), Expect = 7.0e-82
Identity = 171/314 (54.46%), Postives = 200/314 (63.69%), Query Frame = 0


Query: 3   VVADDSTEVAAAKN------------FDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSS 62
           VV DD  EV+                 D + + +S  D HKL  MF  LNPLAKEFFPS 
Sbjct: 12  VVVDDVKEVSTKSEKIIDEGIEKSSITDSKTETESRLDMHKLVAMFKKLNPLAKEFFPSY 71

Query: 63  YSHHDRPDF----QFYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXX 122
           Y            QF   +   ++ K       L                          
Sbjct: 72  YDPKKNNQVAKANQFLPADDFETTKKQSGEEFDLDAKKDDNTRKRRNYSQGRRRLTGRIS 131

Query: 123 XXXXXXXVMRTVYVSDIDKDVSEEELA-------KVNDCRICGDPHSVLRFAFVEFANEP 182
                  + RTVYVSDID+ V+EE LA       +V DCRICGDPHSVLRFAFVEFA++ 
Sbjct: 132 KAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQ 191

Query: 183 SARAATGLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQ 242
            A  A  L GTM+G YP++VLPSKTAILPVNPTFLP+S DE +MCTRTIYCTNIDKKVSQ
Sbjct: 192 GAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQ 251

Query: 243 IEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSP 294
            +V+NFFE++CGEVTRLRLLGDQLHSTRIAFVEFA+A++AL ALNCSGM++G+QPIRVSP
Sbjct: 252 ADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSALNCSGMVVGSQPIRVSP 311

[Close]

BLAST of Carg13105 vs. TAIR10
Match: AT1G53650.1 (CTC-interacting domain 8)

HSP 1 Score: 275.0 bits (702), Expect = 5.4e-74
Identity = 155/287 (54.01%), Postives = 192/287 (66.90%), Query Frame = 0


Query: 20  EMKPKS--EFD-AHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSS--MKNF 79
           ++KPKS  E+D   KL  MF  LNP AKEFFPS            Y  N N+S   +   
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------------YKRNTNQSDDFVIAI 97

Query: 80  QPA-DQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYVSDIDKDVSEEELA 139
           +P+ +                                   + RTVYVSDID+ V+EE LA
Sbjct: 98  KPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLA 157

Query: 140 -------KVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAI 199
                  +V DCRICGDP+SVLRFAFVEF+++  AR+A  L GTM+G YP++VLPSKTAI
Sbjct: 158 GLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAI 217

Query: 200 LPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHST 259
           LPVNPTFLP+S DE +MC+RTIYCTN+DK  ++ +V  FF+++CGEVTRLRLLGDQ+HST
Sbjct: 218 LPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHST 277

Query: 260 RIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPGS 294
           RIAFVEFAMAE+A+ ALNCSG++LG+QPIRVSPSKTPVR R+TR  S
Sbjct: 278 RIAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITRSPS 312

[Close]

BLAST of Carg13105 vs. TAIR10
Match: AT3G49390.1 (CTC-interacting domain 10)

HSP 1 Score: 255.8 bits (652), Expect = 3.4e-68
Identity = 141/266 (53.01%), Postives = 170/266 (63.91%), Query Frame = 0


Query: 32  LAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPADQLLHXXXXXXXXX 91
           LA+ FS LNP+A+EF P S +       Q            NF    +L           
Sbjct: 90  LADAFSKLNPMAQEFVPPSLARS-----QSGVLRNGLGFTNNFAAPPKLADGNDHFPRRR 149

Query: 92  XXXXXXXXXXXXXXXXXXXXXXVMRTVYVSDIDKDVSEEELA-------KVNDCRICGDP 151
                                 + RTVYVSDID+ V+EE LA       +V DCR+CGDP
Sbjct: 150 RSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDP 209

Query: 152 HSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMC 211
           +SVLRFAF+EF NE  ARAA  +SGT++G YP+KVLPSKTAI PVNPTFLP+S DE +MC
Sbjct: 210 NSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMC 269

Query: 212 TRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALN 271
            RT+YCTNIDK+++QI++K FFE  CGEV RLR LGD  H TRIAFVEFAMAE+A+ AL+
Sbjct: 270 VRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTRIAFVEFAMAESAIAALH 329

Query: 272 CSGMILGTQPIRVSPSKTPVRPRVTR 291
           CSG++LG  PIRVSPSKTPVRP   R
Sbjct: 330 CSGIVLGALPIRVSPSKTPVRPHFPR 349

[Close]

BLAST of Carg13105 vs. TAIR10
Match: AT4G10610.1 (CTC-interacting domain 12)

HSP 1 Score: 255.4 bits (651), Expect = 4.4e-68
Identity = 142/269 (52.79%), Postives = 174/269 (64.68%), Query Frame = 0


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ--FYYHNYNRSSMKNFQPADQLLHXXX 87
           D  +L E+ S LNP+AKEF P S +      F   F+  N    +  NF      ++   
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFP-----VNEDG 124

Query: 88  XXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYVSDIDKDVSEEELA-------KVNDC 147
                                       + RTVYVSDID+ V+EE+LA       +V DC
Sbjct: 125 SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDC 184

Query: 148 RICGDPHSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSN 207
           RICGDP+SVLRFAF+EF +E  AR A  LSGTM+G YP+KV+PSKTAI PVNPTFLP++ 
Sbjct: 185 RICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTE 244

Query: 208 DEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAET 267
           DE +MC RTIYCTNIDKK++Q ++K FFE+ CGEV RLRLLGD  H TRI FVEF MAE+
Sbjct: 245 DEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAES 304

Query: 268 ALQALNCSGMILGTQPIRVSPSKTPVRPR 288
           A+ ALNCSG++LG+ PIRVSPSKTPVR R
Sbjct: 305 AIAALNCSGVLLGSLPIRVSPSKTPVRSR 328

[Close]

BLAST of Carg13105 vs. TAIR10
Match: AT1G32790.2 (CTC-interacting domain 11)

HSP 1 Score: 239.6 bits (610), Expect = 2.5e-63
Identity = 118/172 (68.60%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 114 VMRTVYVSDIDKDVSEEELA-------KVNDCRICGDPHSVLRFAFVEFANEPSARAATG 173
           + RTVYVSD+D+ V+EE+LA       +V DCRICGDP+SVLRFAF+EF +E  A  A  
Sbjct: 171 IRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALN 230

Query: 174 LSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFF 233
           LSGTM+G YP+KVLPSKTAI PVNPTFLP++ DE +MC RTIYCTNIDKKV+Q +VK FF
Sbjct: 231 LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFF 290

Query: 234 ETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVS 279
           E+ CGEV RLRLLGD  HSTRIAFVEF MAE+A+ ALNCSG++LG+ PIR S
Sbjct: 291 ESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRSS 342

[Close]

BLAST of Carg13105 vs. Swiss-Prot
Match: sp|Q9LRR6|CID9_ARATH (Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana OX=3702 GN=CID9 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-80
Identity = 171/314 (54.46%), Postives = 200/314 (63.69%), Query Frame = 0


Query: 3   VVADDSTEVAAAKN------------FDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSS 62
           VV DD  EV+                 D + + +S  D HKL  MF  LNPLAKEFFPS 
Sbjct: 12  VVVDDVKEVSTKSEKIIDEGIEKSSITDSKTETESRLDMHKLVAMFKKLNPLAKEFFPSY 71

Query: 63  YSHHDRPDF----QFYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXX 122
           Y            QF   +   ++ K       L                          
Sbjct: 72  YDPKKNNQVAKANQFLPADDFETTKKQSGEEFDLDAKKDDNTRKRRNYSQGRRRLTGRIS 131

Query: 123 XXXXXXXVMRTVYVSDIDKDVSEEELA-------KVNDCRICGDPHSVLRFAFVEFANEP 182
                  + RTVYVSDID+ V+EE LA       +V DCRICGDPHSVLRFAFVEFA++ 
Sbjct: 132 KAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQ 191

Query: 183 SARAATGLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQ 242
            A  A  L GTM+G YP++VLPSKTAILPVNPTFLP+S DE +MCTRTIYCTNIDKKVSQ
Sbjct: 192 GAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQ 251

Query: 243 IEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSP 294
            +V+NFFE++CGEVTRLRLLGDQLHSTRIAFVEFA+A++AL ALNCSGM++G+QPIRVSP
Sbjct: 252 ADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSALNCSGMVVGSQPIRVSP 311

[Close]

BLAST of Carg13105 vs. Swiss-Prot
Match: sp|Q9C8M0|CID8_ARATH (Polyadenylate-binding protein-interacting protein 8 OS=Arabidopsis thaliana OX=3702 GN=CID8 PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.7e-73
Identity = 155/287 (54.01%), Postives = 192/287 (66.90%), Query Frame = 0


Query: 20  EMKPKS--EFD-AHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSS--MKNF 79
           ++KPKS  E+D   KL  MF  LNP AKEFFPS            Y  N N+S   +   
Sbjct: 38  DLKPKSKPEYDQMKKLVAMFKKLNPEAKEFFPS------------YKRNTNQSDDFVIAI 97

Query: 80  QPA-DQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYVSDIDKDVSEEELA 139
           +P+ +                                   + RTVYVSDID+ V+EE LA
Sbjct: 98  KPSGEDNKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLA 157

Query: 140 -------KVNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAI 199
                  +V DCRICGDP+SVLRFAFVEF+++  AR+A  L GTM+G YP++VLPSKTAI
Sbjct: 158 GLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAI 217

Query: 200 LPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHST 259
           LPVNPTFLP+S DE +MC+RTIYCTN+DK  ++ +V  FF+++CGEVTRLRLLGDQ+HST
Sbjct: 218 LPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHST 277

Query: 260 RIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPGS 294
           RIAFVEFAMAE+A+ ALNCSG++LG+QPIRVSPSKTPVR R+TR  S
Sbjct: 278 RIAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITRSPS 312

[Close]

BLAST of Carg13105 vs. Swiss-Prot
Match: sp|Q9LPI5|CID11_ARATH (Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana OX=3702 GN=CID11 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-68
Identity = 129/184 (70.11%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 114 VMRTVYVSDIDKDVSEEELA-------KVNDCRICGDPHSVLRFAFVEFANEPSARAATG 173
           + RTVYVSD+D+ V+EE+LA       +V DCRICGDP+SVLRFAF+EF +E  A  A  
Sbjct: 171 IRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALN 230

Query: 174 LSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFF 233
           LSGTM+G YP+KVLPSKTAI PVNPTFLP++ DE +MC RTIYCTNIDKKV+Q +VK FF
Sbjct: 231 LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFF 290

Query: 234 ETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRP 291
           E+ CGEV RLRLLGD  HSTRIAFVEF MAE+A+ ALNCSG++LG+ PIRVSPSKTPVRP
Sbjct: 291 ESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRP 350

[Close]

BLAST of Carg13105 vs. Swiss-Prot
Match: sp|Q9SG10|CID10_ARATH (Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana OX=3702 GN=CID10 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.1e-67
Identity = 141/266 (53.01%), Postives = 170/266 (63.91%), Query Frame = 0


Query: 32  LAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPADQLLHXXXXXXXXX 91
           LA+ FS LNP+A+EF P S +       Q            NF    +L           
Sbjct: 90  LADAFSKLNPMAQEFVPPSLARS-----QSGVLRNGLGFTNNFAAPPKLADGNDHFPRRR 149

Query: 92  XXXXXXXXXXXXXXXXXXXXXXVMRTVYVSDIDKDVSEEELA-------KVNDCRICGDP 151
                                 + RTVYVSDID+ V+EE LA       +V DCR+CGDP
Sbjct: 150 RSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDP 209

Query: 152 HSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMC 211
           +SVLRFAF+EF NE  ARAA  +SGT++G YP+KVLPSKTAI PVNPTFLP+S DE +MC
Sbjct: 210 NSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMC 269

Query: 212 TRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALN 271
            RT+YCTNIDK+++QI++K FFE  CGEV RLR LGD  H TRIAFVEFAMAE+A+ AL+
Sbjct: 270 VRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLR-LGDYHHQTRIAFVEFAMAESAIAALH 329

Query: 272 CSGMILGTQPIRVSPSKTPVRPRVTR 291
           CSG++LG  PIRVSPSKTPVRP   R
Sbjct: 330 CSGIVLGALPIRVSPSKTPVRPHFPR 349

[Close]

BLAST of Carg13105 vs. Swiss-Prot
Match: sp|Q9S7N9|CID12_ARATH (Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana OX=3702 GN=CID12 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 7.9e-67
Identity = 142/269 (52.79%), Postives = 174/269 (64.68%), Query Frame = 0


Query: 28  DAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ--FYYHNYNRSSMKNFQPADQLLHXXX 87
           D  +L E+ S LNP+AKEF P S +      F   F+  N    +  NF      ++   
Sbjct: 65  DMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFP-----VNEDG 124

Query: 88  XXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYVSDIDKDVSEEELA-------KVNDC 147
                                       + RTVYVSDID+ V+EE+LA       +V DC
Sbjct: 125 SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDC 184

Query: 148 RICGDPHSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSN 207
           RICGDP+SVLRFAF+EF +E  AR A  LSGTM+G YP+KV+PSKTAI PVNPTFLP++ 
Sbjct: 185 RICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTE 244

Query: 208 DEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAET 267
           DE +MC RTIYCTNIDKK++Q ++K FFE+ CGEV RLRLLGD  H TRI FVEF MAE+
Sbjct: 245 DEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAES 304

Query: 268 ALQALNCSGMILGTQPIRVSPSKTPVRPR 288
           A+ ALNCSG++LG+ PIRVSPSKTPVR R
Sbjct: 305 AIAALNCSGVLLGSLPIRVSPSKTPVRSR 328

[Close]

BLAST of Carg13105 vs. TrEMBL
Match: tr|A0A1S3BSA4|A0A1S3BSA4_CUCME (polyadenylate-binding protein-interacting protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492975 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 9.0e-116
Identity = 258/304 (84.87%), Postives = 266/304 (87.50%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VA+DS+E AA KNFD  M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF 
Sbjct: 1   MAAVAEDSSEAAAVKNFDHNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFH 60

Query: 61  FYYHNYNRSSMKNFQPA-DQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVY 120
           F          KNFQ A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ RTVY
Sbjct: 61  FXXXXXXXXLAKNFQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRRTVY 120

Query: 121 VSDIDKDVSEEELAK--------VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAK        VNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTV 180

Query: 181 VGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCG 240
           VGSYP+KVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQ EVK+FFETSCG
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 EVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRP 296
           EVTRLRLLGDQLHSTRIAFVEFA+AETALQALNCSGMILG QPIRVSPSKTPVRPRVTRP
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRP 300

[Close]

BLAST of Carg13105 vs. TrEMBL
Match: tr|A0A0A0L0A8|A0A0A0L0A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G076250 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 4.8e-109
Identity = 245/284 (86.27%), Postives = 251/284 (88.38%), Query Frame = 0


Query: 21  MKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQFYYHNYNRSSMKNFQPA-DQ 80
           M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF F          KNFQ A   
Sbjct: 1   MNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFHFXXXXXXXXLAKNFQVAXXX 60

Query: 81  LLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVYVSDIDKDVSEEELAK----- 140
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ RTVYVSDIDKDVSEEELAK     
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRRTVYVSDIDKDVSEEELAKVFREF 120

Query: 141 ---VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTMVGSYPIKVLPSKTAILPVNP 200
              VNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+VGSYP+KVLPSKTAILPVNP
Sbjct: 121 CGYVNDCRICGDPHSVLRFAFVEFANEHSARAAVGLSGTVVGSYPVKVLPSKTAILPVNP 180

Query: 201 TFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCGEVTRLRLLGDQLHSTRIAFV 260
           TFLPKSNDEWDMCTRTIYCTNIDKKVSQ EVK+FFETSCGEVTRLRLLGDQLHSTRIAFV
Sbjct: 181 TFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFV 240

Query: 261 EFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPRVTRPGSIK 296
           EFA+AETALQALNCSGMILG QPIRVSPSKTPVRPRVTRPGS+K
Sbjct: 241 EFALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRPGSLK 284

[Close]

BLAST of Carg13105 vs. TrEMBL
Match: tr|A0A1S3BT45|A0A1S3BT45_CUCME (polyadenylate-binding protein-interacting protein 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492975 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 9.6e-94
Identity = 220/264 (83.33%), Postives = 227/264 (85.98%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFDPEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRPDFQ 60
           MA VA+DS+E AA KNFD  M PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDR DF 
Sbjct: 1   MAAVAEDSSEAAAVKNFDHNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFH 60

Query: 61  FYYHNYNRSSMKNFQPA-DQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRTVY 120
           F          KNFQ A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ RTVY
Sbjct: 61  FXXXXXXXXLAKNFQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRRTVY 120

Query: 121 VSDIDKDVSEEELAK--------VNDCRICGDPHSVLRFAFVEFANEPSARAATGLSGTM 180
           VSDIDKDVSEEELAK        VNDCRICGDPHSVLRFAFVEFANE SARAA GLSGT+
Sbjct: 121 VSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTV 180

Query: 181 VGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFETSCG 240
           VGSYP+KVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQ EVK+FFETSCG
Sbjct: 181 VGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCG 240

Query: 241 EVTRLRLLGDQLHSTRIAFVEFAM 256
           EVTRLRLLGDQLHSTRIAFVEFA+
Sbjct: 241 EVTRLRLLGDQLHSTRIAFVEFAL 264

[Close]

BLAST of Carg13105 vs. TrEMBL
Match: tr|M5WGQ0|M5WGQ0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G149200 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.6e-88
Identity = 185/304 (60.86%), Postives = 210/304 (69.08%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFD------PEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHH 60
           MA VA+ S E A+ KN +      P  + KSEFD  KL +MF+ LNPLAKEFFPSSYSHH
Sbjct: 1   MAAVAEISGEAASVKNSNLDSMSKPMSESKSEFDVQKLVDMFTKLNPLAKEFFPSSYSHH 60

Query: 61  DRPDFQFYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 120
              +F       N     N   A+                                   +
Sbjct: 61  QHSNFDNSLAVNNNKLSANDNLANN--------RRRRNSFNQGKRRLSGRAFRAERENSI 120

Query: 121 MRTVYVSDIDKDVSEEELA-------KVNDCRICGDPHSVLRFAFVEFANEPSARAATGL 180
            RTVYVSDID+ V+EE LA       +V DCRICGDPHSVLRFAFVEFA+E  ARAA  L
Sbjct: 121 RRTVYVSDIDQQVTEERLAAIFSSCGQVVDCRICGDPHSVLRFAFVEFADEHGARAALNL 180

Query: 181 SGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNFFE 240
            GTM+G YP++VLPSKTAILPVNPTFLP+S DE +MC+RT+YCTNIDKKVSQ EVKNFFE
Sbjct: 181 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVSQAEVKNFFE 240

Query: 241 TSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVRPR 292
           T+CGEVTRLRLLGD +HSTRIAFVEFAMAE+A+ ALNCSGM+LGTQPIRVSPSKTPVRPR
Sbjct: 241 TACGEVTRLRLLGDHVHSTRIAFVEFAMAESAILALNCSGMVLGTQPIRVSPSKTPVRPR 296

[Close]

BLAST of Carg13105 vs. TrEMBL
Match: tr|A0A2P6Q983|A0A2P6Q983_ROSCH (Putative ataxin-2, nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0027791 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.5e-86
Identity = 195/306 (63.73%), Postives = 221/306 (72.22%), Query Frame = 0


Query: 1   MAVVADDSTEVAAAKNFD--------PEMKPKSEFDAHKLAEMFSNLNPLAKEFFPSSYS 60
           MA VA+ + E A+A N +         E KPKSEFD  KL +MF+ LNPLAKEFFPSSYS
Sbjct: 1   MAAVAEIAGEAASANNQNLDSISKPLSESKPKSEFDVQKLVDMFTKLNPLAKEFFPSSYS 60

Query: 61  HHDRPDFQFYYHNYNRSSMKNFQPADQLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                      HN++ S   N         XXXXXXXXXXXX                  
Sbjct: 61  -------PLQNHNFDNSFAVN-XXXXXXXXXXXXXXXXXXXXNQGKRRLSGRAFRAEREN 120

Query: 121 XVMRTVYVSDIDKDVSEEELA-------KVNDCRICGDPHSVLRFAFVEFANEPSARAAT 180
            + RTVYVSDID+ V+EE LA       +V DCRICGDPHSVLRFAFVEFA+E  ARAA 
Sbjct: 121 SIRRTVYVSDIDQQVTEERLAAIFSNCGQVVDCRICGDPHSVLRFAFVEFADEHGARAAL 180

Query: 181 GLSGTMVGSYPIKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQIEVKNF 240
            L GTM+G YP++VLPSKTAILPVNPTFLP+S DE +MC+RT+YCTNIDKKVSQ EVK+F
Sbjct: 181 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVSQAEVKSF 240

Query: 241 FETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGTQPIRVSPSKTPVR 292
           FET+CGEVTRLRLLGD +HSTRIAFVEFAMAE+A+ ALNCSGM+LGTQPIRVSPSKTPVR
Sbjct: 241 FETACGEVTRLRLLGDHVHSTRIAFVEFAMAESAILALNCSGMVLGTQPIRVSPSKTPVR 298

The following BLAST results are available for this feature:

BLAST of Carg13105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942237.1	1.7e-142	97.38	polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata] >X...	[more]
XP_023531181.1	6.5e-142	96.72	polyadenylate-binding protein-interacting protein 9-like [Cucurbita pepo subsp. ...	[more]
XP_022982064.1	2.7e-140	96.39	polyadenylate-binding protein-interacting protein 9-like [Cucurbita maxima]	[more]
XP_022984913.1	2.3e-123	85.62	polyadenylate-binding protein-interacting protein 9-like [Cucurbita maxima]	[more]
XP_022931470.1	8.8e-123	85.29	polyadenylate-binding protein-interacting protein 9-like [Cucurbita moschata] >X...	[more]

BLAST of Carg13105 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14450.1	7.0e-82	54.46	CTC-interacting domain 9	[more]
AT1G53650.1	5.4e-74	54.01	CTC-interacting domain 8	[more]
AT3G49390.1	3.4e-68	53.01	CTC-interacting domain 10	[more]
AT4G10610.1	4.4e-68	52.79	CTC-interacting domain 12	[more]
AT1G32790.2	2.5e-63	68.60	CTC-interacting domain 11	[more]

BLAST of Carg13105 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LRR6\|CID9_ARATH	1.3e-80	54.46	Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q9C8M0\|CID8_ARATH	9.7e-73	54.01	Polyadenylate-binding protein-interacting protein 8 OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q9LPI5\|CID11_ARATH	2.5e-68	70.11	Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q9SG10\|CID10_ARATH	6.1e-67	53.01	Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q9S7N9\|CID12_ARATH	7.9e-67	52.79	Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana OX=...	[more]

BLAST of Carg13105 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSA4\|A0A1S3BSA4_CUCME	9.0e-116	84.87	polyadenylate-binding protein-interacting protein 9 isoform X1 OS=Cucumis melo O...	[more]
tr\|A0A0A0L0A8\|A0A0A0L0A8_CUCSA	4.8e-109	86.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G076250 PE=4 SV=1	[more]
tr\|A0A1S3BT45\|A0A1S3BT45_CUCME	9.6e-94	83.33	polyadenylate-binding protein-interacting protein 9 isoform X2 OS=Cucumis melo O...	[more]
tr\|M5WGQ0\|M5WGQ0_PRUPE	1.6e-88	60.86	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G149200 PE=4 SV=1	[more]
tr\|A0A2P6Q983\|A0A2P6Q983_ROSCH	2.5e-86	63.73	Putative ataxin-2, nucleotide-binding alpha-beta plait domain-containing protein...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034825	CID8_like_RRM2
IPR009818	Ataxin-2_C
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13105-RA	Carg13105-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 207..278 e-value: 8.0E-12 score: 55.3 coord: 117..180 e-value: 0.0021 score: 27.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 118..178 e-value: 6.9E-5 score: 22.5 coord: 208..275 e-value: 1.3E-7 score: 31.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 116..184 score: 10.838
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 206..282 score: 12.441
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 206..278 e-value: 6.8E-14 score: 53.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 65..185 e-value: 5.3E-10 score: 41.4
IPR009818	Ataxin-2, C-terminal	PFAM	PF07145	PAM2	coord: 35..51 e-value: 5.8E-5 score: 22.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..297
None	No IPR available	PANTHER	PTHR44161	FAMILY NOT NAMED	coord: 1..292
None	No IPR available	PANTHER	PTHR44161:SF3	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 8-RELATED	coord: 1..292
IPR034825	CID8-like protein, RNA recognition motif 2	CDD	cd12460	RRM2_CID8_like	coord: 202..283 e-value: 1.463E-53 score: 170.755
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 106..185
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 196..290

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13105	Cla005403	Watermelon (97103) v1	carwmB0043
Carg13105	Csa4G076250	Cucumber (Chinese Long) v2	carcuB0047
Carg13105	MELO3C016159	Melon (DHL92) v3.5.1	carmeB0042
Carg13105	ClCG07G010530	Watermelon (Charleston Gray)	carwcgB0046
Carg13105	CSPI04G07640	Wild cucumber (PI 183967)	carcpiB0051
Carg13105	CmaCh16G004580	Cucurbita maxima (Rimu)	carcmaB0052
Carg13105	CmaCh04G006450	Cucurbita maxima (Rimu)	carcmaB0055
Carg13105	CmoCh16G004930	Cucurbita moschata (Rifu)	carcmoB0054
Carg13105	CmoCh04G006930	Cucurbita moschata (Rifu)	carcmoB0058
Carg13105	Lsi07G008490	Bottle gourd (USVL1VR-Ls)	carlsiB043
Carg13105	Cp4.1LG01g00950	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13105	Cp4.1LG14g03240	Cucurbita pepo (Zucchini)	carcpeB0057
Carg13105	CsGy4G007550	Cucumber (Gy14) v2	carcgybB0047
Carg13105	MELO3C016159.2	Melon (DHL92) v3.6.1	carmedB0043
Carg13105	CsaV3_4G007860	Cucumber (Chinese Long) v3	carcucB0052
Carg13105	Cla97C07G137230	Watermelon (97103) v2	carwmbB0043
Carg13105	Bhi01G002430	Wax gourd	carwgoB0053

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13105	Carg11383	Silver-seed gourd	carcarB050

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13105	Silver-seed gourd	carcarB052
Carg13105	Cucurbita pepo (Zucchini)	carcpeB0058
Carg13105	Wild cucumber (PI 183967)	carcpiB0050
Carg13105	Cucumber (Chinese Long) v2	carcuB0046
Carg13105	Cucumber (Chinese Long) v3	carcucB0051
Carg13105	Bottle gourd (USVL1VR-Ls)	carlsiB042
Carg13105	Watermelon (Charleston Gray)	carwcgB0050