Cp4.1LG01g00040 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaA09g12530D protein
Location	Cp4.1LG01 : 3877729 .. 3878001 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGCCGAGTTGAACGGGAAGACCACCAAGCTCGAGGAAGCGGGTGCGGACGAGAACGAGTCCTTGGCCTCCTACATTAACAGCAACTTCCAAGCCATCAACAACTCCATAATGTTCGGCGGCAGCTACACCGGCAACGACCCTGGTGTTCACATGGACATGTCTGATTACTACGAAGAAGGGCATAAGGCTGAGAAAGGAGCGGCTAAAGGCAAGAAAGTTGGGAAGGATAACGCTGAGTCCGGTGGCTCTTGGTTTTCAAAGGAATGA

mRNA sequence

ATGCGAGCCGAGTTGAACGGGAAGACCACCAAGCTCGAGGAAGCGGGTGCGGACGAGAACGAGTCCTTGGCCTCCTACATTAACAGCAACTTCCAAGCCATCAACAACTCCATAATGTTCGGCGGCAGCTACACCGGCAACGACCCTGGTGTTCACATGGACATGTCTGATTACTACGAAGAAGGGCATAAGGCTGAGAAAGGAGCGGCTAAAGGCAAGAAAGTTGGGAAGGATAACGCTGAGTCCGGTGGCTCTTGGTTTTCAAAGGAATGA

Coding sequence (CDS)

ATGCGAGCCGAGTTGAACGGGAAGACCACCAAGCTCGAGGAAGCGGGTGCGGACGAGAACGAGTCCTTGGCCTCCTACATTAACAGCAACTTCCAAGCCATCAACAACTCCATAATGTTCGGCGGCAGCTACACCGGCAACGACCCTGGTGTTCACATGGACATGTCTGATTACTACGAAGAAGGGCATAAGGCTGAGAAAGGAGCGGCTAAAGGCAAGAAAGTTGGGAAGGATAACGCTGAGTCCGGTGGCTCTTGGTTTTCAAAGGAATGA

Protein sequence

MRAELNGKTTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMSDYYEEGHKAEKGAAKGKKVGKDNAESGGSWFSKE

Homology

[Close]

BLAST of Cp4.1LG01g00040 vs. TrEMBL
Match: A0A0A0KUN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G047960 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-34
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 1   MRAELNGKTTKLEE-AGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMD-MSDY 60
           MRAELNGKTTKL++  G DENESL SYINSNFQAINNSIMFGGSYTGNDPGVHM+  SD 
Sbjct: 71  MRAELNGKTTKLDQDTGVDENESLTSYINSNFQAINNSIMFGGSYTGNDPGVHMEYTSDL 130

Query: 61  YEEGHKAEKGAAKGKKVGKDNAESGGSWFSKE 91
           +EEGHKAEKG AKGKKVGKDNAESGGSWFSKE
Sbjct: 131 HEEGHKAEKGGAKGKKVGKDNAESGGSWFSKE 162

[Close]

BLAST of Cp4.1LG01g00040 vs. TrEMBL
Match: B9RYY5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1314880 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 1   MRAELNGK-TTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMSDYY 60
           MR+EL+ K TT    +G D+ E+L +Y+NSNFQA+NNSIMFG SY+ NDPGVH+D+SD++
Sbjct: 73  MRSELDEKGTTPQGVSGDDQPEALGTYVNSNFQAVNNSIMFGSSYSTNDPGVHLDISDFF 132

Query: 61  EE--GHKAEKGAAKGKK 75
           E+  GHK ++ A KGKK
Sbjct: 133 EQPHGHKPDRHARKGKK 149

[Close]

BLAST of Cp4.1LG01g00040 vs. TrEMBL
Match: A0A072VEM8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g016680 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   MRAELNGKTTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMSDYYE 60
           +R+EL+ K+ K   +  DE E+L++Y+NSNFQAINNSIM GGSY  NDPGVHMD+SD+ E
Sbjct: 71  LRSELDAKSGKY--SSHDEAEALSTYVNSNFQAINNSIMLGGSYHANDPGVHMDISDFTE 130

Query: 61  EGHKAEKGAAKGKKVGKD 79
                +K    GKK  KD
Sbjct: 131 PPQNQQKAEKHGKKEKKD 146

[Close]

BLAST of Cp4.1LG01g00040 vs. TrEMBL
Match: A0A0B2SL52_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020274 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 1   MRAELNGKTTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMSDYYE 60
           +R+EL+ K+ K       E+E L++++NSNFQAINNSIMFGGSY  NDPGVH+D+SD+ +
Sbjct: 43  LRSELDEKSGKTSHG---ESEELSTFVNSNFQAINNSIMFGGSYQANDPGVHLDISDFTD 102

Query: 61  E-----GHKAEKGAAKGKKVGKDNAES 83
           +      HK EK   KGKK  K+ ++S
Sbjct: 103 QPPESHHHKVEKPGKKGKKKDKEGSKS 126

[Close]

BLAST of Cp4.1LG01g00040 vs. TrEMBL
Match: V7BI05_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G247100g PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-12
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 1   MRAELNGKTTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMSDYYE 60
           MR+EL+ K+     +  DE E+L++Y+NSNFQAINNS+M GGSY  NDPGVH+D+SD+  
Sbjct: 90  MRSELDDKSGT--HSHGDEPEALSTYVNSNFQAINNSLMLGGSYHANDPGVHLDISDFST 149

Query: 61  E-----GHKAEKGAAKGKKVGKDNAE 82
           E      HK E+   KGKK+ K N++
Sbjct: 150 EPHQSHHHKEERHGKKGKKIEKKNSK 173

[Close]

BLAST of Cp4.1LG01g00040 vs. TAIR10
Match: AT1G63310.1 (AT1G63310.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1


Query: 1   MRAELNGKTTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMS-DYY 60
           M+ EL+      ++ G  E + L++Y+NSNFQA+NNSIM G  Y  +DPGVH+D+S D  
Sbjct: 64  MKTELDNNHGDRDQNGDHELDFLSTYVNSNFQAVNNSIMIGAKYETHDPGVHLDISGDVE 123

Query: 61  EEGHKAEKGAAKGKKVGKDNAES 83
           +   K    +++GKK GK  A S
Sbjct: 124 KPSVKIPARSSRGKK-GKTPARS 145

[Close]

BLAST of Cp4.1LG01g00040 vs. NCBI nr
Match: gi|449457570|ref|XP_004146521.1| (PREDICTED: uncharacterized protein LOC101210126 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-34
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 1   MRAELNGKTTKLEE-AGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMD-MSDY 60
           MRAELNGKTTKL++  G DENESL SYINSNFQAINNSIMFGGSYTGNDPGVHM+  SD 
Sbjct: 71  MRAELNGKTTKLDQDTGVDENESLTSYINSNFQAINNSIMFGGSYTGNDPGVHMEYTSDL 130

Query: 61  YEEGHKAEKGAAKGKKVGKDNAESGGSWFSKE 91
           +EEGHKAEKG AKGKKVGKDNAESGGSWFSKE
Sbjct: 131 HEEGHKAEKGGAKGKKVGKDNAESGGSWFSKE 162

[Close]

BLAST of Cp4.1LG01g00040 vs. NCBI nr
Match: gi|659102264|ref|XP_008452037.1| (PREDICTED: uncharacterized protein LOC103493165 isoform X1 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-32
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 1   MRAELNGKT-TKLEE-AGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMD-MSD 60
           MRAELNGKT TKL++  G DE+ESL SYINSNFQAINNSIMFGGSYTGNDPGVHM+  SD
Sbjct: 72  MRAELNGKTMTKLDQDTGVDESESLTSYINSNFQAINNSIMFGGSYTGNDPGVHMEYTSD 131

Query: 61  YYEEGHKAEKGAAKGKKVGKDNAESGGSWFSKE 91
            +EEGHKAEKG AKGKK+GKDNAESGGSWFSKE
Sbjct: 132 LHEEGHKAEKGGAKGKKIGKDNAESGGSWFSKE 164

[Close]

BLAST of Cp4.1LG01g00040 vs. NCBI nr
Match: gi|659102266|ref|XP_008452038.1| (PREDICTED: uncharacterized protein LOC103493165 isoform X2 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-32
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 1   MRAELNGKT-TKLEE-AGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMD-MSD 60
           MRAELNGKT TKL++  G DE+ESL SYINSNFQAINNSIMFGGSYTGNDPGVHM+  SD
Sbjct: 71  MRAELNGKTMTKLDQDTGVDESESLTSYINSNFQAINNSIMFGGSYTGNDPGVHMEYTSD 130

Query: 61  YYEEGHKAEKGAAKGKKVGKDNAESGGSWFSKE 91
            +EEGHKAEKG AKGKK+GKDNAESGGSWFSKE
Sbjct: 131 LHEEGHKAEKGGAKGKKIGKDNAESGGSWFSKE 163

[Close]

BLAST of Cp4.1LG01g00040 vs. NCBI nr
Match: gi|255555837|ref|XP_002518954.1| (PREDICTED: uncharacterized protein LOC8278482 [Ricinus communis])

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 1   MRAELNGK-TTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMSDYY 60
           MR+EL+ K TT    +G D+ E+L +Y+NSNFQA+NNSIMFG SY+ NDPGVH+D+SD++
Sbjct: 73  MRSELDEKGTTPQGVSGDDQPEALGTYVNSNFQAVNNSIMFGSSYSTNDPGVHLDISDFF 132

Query: 61  EE--GHKAEKGAAKGKK 75
           E+  GHK ++ A KGKK
Sbjct: 133 EQPHGHKPDRHARKGKK 149

[Close]

BLAST of Cp4.1LG01g00040 vs. NCBI nr
Match: gi|502078368|ref|XP_004485922.1| (PREDICTED: uncharacterized protein LOC101511467 [Cicer arietinum])

HSP 1 Score: 81.6 bits (200), Expect = 7.5e-13
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 1   MRAELNGKTTKLEEAGADENESLASYINSNFQAINNSIMFGGSYTGNDPGVHMDMSDYYE 60
           +R+EL+ K+ K    G  E E+L++Y+NSNFQA+NNSIM GGSY  NDPGVHMD+SD+ E
Sbjct: 71  LRSELDEKSGKYSSDG--EPEALSTYVNSNFQAVNNSIMLGGSYHANDPGVHMDISDFTE 130

Query: 61  ---EGHKAEKGAAKGKKVGKDNAES 83
                HKAEK   K KK GK+ +++
Sbjct: 131 PPQSHHKAEKLGKKEKKKGKEGSKT 153

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUN4_CUCSA	2.4e-34	86.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G047960 PE=4 SV=1	[more]
B9RYY5_RICCO	1.6e-14	58.44	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1314880 PE=4 SV=1	[more]
A0A072VEM8_MEDTR	1.2e-12	55.13	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g016680 PE=4 SV=1	[more]
A0A0B2SL52_GLYSO	1.2e-12	50.57	Uncharacterized protein OS=Glycine soja GN=glysoja_020274 PE=4 SV=1	[more]
V7BI05_PHAVU	2.6e-12	51.16	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G247100g PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63310.1	2.4e-09	43.37	unknown protein	[more]

BLAST of Cp4.1LG01g00040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457570\|ref\|XP_004146521.1\|	3.5e-34	86.96	PREDICTED: uncharacterized protein LOC101210126 [Cucumis sativus]	[more]
gi\|659102264\|ref\|XP_008452037.1\|	4.2e-32	83.87	PREDICTED: uncharacterized protein LOC103493165 isoform X1 [Cucumis melo]	[more]
gi\|659102266\|ref\|XP_008452038.1\|	4.2e-32	83.87	PREDICTED: uncharacterized protein LOC103493165 isoform X2 [Cucumis melo]	[more]
gi\|255555837\|ref\|XP_002518954.1\|	2.3e-14	58.44	PREDICTED: uncharacterized protein LOC8278482 [Ricinus communis]	[more]
gi\|502078368\|ref\|XP_004485922.1\|	7.5e-13	54.12	PREDICTED: uncharacterized protein LOC101511467 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00040.1	Cp4.1LG01g00040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 4..61 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00040	Cucsa.106770	Cucumber (Gy14) v1	cgycpeB0239
Cp4.1LG01g00040	CmaCh16G005980	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g00040	CmaCh04G007400	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00040	CmoCh04G007880	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00040	CmoCh16G006480	Cucurbita moschata (Rifu)	cmocpeB313
Cp4.1LG01g00040	Cla014624	Watermelon (97103) v1	cpewmB408
Cp4.1LG01g00040	Csa4G047960	Cucumber (Chinese Long) v2	cpecuB406
Cp4.1LG01g00040	MELO3C016357	Melon (DHL92) v3.5.1	cpemeB415
Cp4.1LG01g00040	ClCG07G008170	Watermelon (Charleston Gray)	cpewcgB405
Cp4.1LG01g00040	CSPI04G05750	Wild cucumber (PI 183967)	cpecpiB405
Cp4.1LG01g00040	MELO3C016357.2	Melon (DHL92) v3.6.1	cpemedB486
Cp4.1LG01g00040	CsaV3_4G005910	Cucumber (Chinese Long) v3	cpecucB0503
Cp4.1LG01g00040	Bhi01G001813	Wax gourd	cpewgoB0510
Cp4.1LG01g00040	CsGy4G005620	Cucumber (Gy14) v2	cgybcpeB508
Cp4.1LG01g00040	Carg22198	Silver-seed gourd	carcpeB0839

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g00040	Cp4.1LG14g02040	Cucurbita pepo (Zucchini)	cpecpeB233

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00040	Silver-seed gourd	carcpeB1302