Cp4.1LG00g01810 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG00g01810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG00 : 4152025 .. 4154130 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCCAGCTCTCCCATTTTCCCTCCACCTTCTTCACCGACCATAATTCCCTCACTTTTCACTATAAAACCACTCTCTGCAAGTCCTCCTCTCGCGTTTTCAAGCTCAATCCCATACCTTATCACTCAAAACCATTCCTCCAAATTACCAATGTGTCGCCACAGGAATACGCTCCTCAAGAAACCCGGAATTCAAGCCCCTCTGATGATGAAATCTCGAAATTCCCAGATGGGAAATCCGGGTCCTCGTCGAAAACCTCCGTTTGGGTCAATCCCAGTAGCCCCAGAGCTTCGAAGCTTCGGAAGCAATCGTACGAAGCCAGGTATGCTTCTCTTAAGAAAATATCGGAGTCTTTGGACTCTTGTAATCCTTGTGAGGATGATGTTGCTGATGTCTTGAAGAGGATAGATAGTAAAATTTTAGAGCAGGACGCTATTGGAGTGCTGAATAACATGTCGAATTCCCAAACTGCGTTGCTTGTGCTTCGGTACTTTCAGGATGTGTTGAAATCAAGTAAACAAGCGGTTTTTTATAATGTGACATTGAAGGTGTTTAGGAAATGCAGAGATTTTGAGGGTGCAGAGAAACTGTTCGACGAAATGCTTGAGAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTTTGTTCATTGCCAAATAAGGCTGTTGAGTGGTTTGAGATGATGCCAAGTTTTGACTGTAATCCTGATGATATCACCTACTCTGGGATGATTGATGCCTATGGACGTGCTGGTAATGTGGACATGGCTTTCAGCTTGTATGACCGTGCAAGAACAGAAAACTGGCGTATCGATCTTTCGACATTCTCGACGATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGATGCTTGAATGTGTATGAAGAAATGAAGGCTGTAGGCATCAAGCCGAACTTGGCTATATATAACAGCTTGCTGGCTGCTATGGGTAGGGCTAAAAGACCCTGGCAGATCAAGACAATTTACAAAGAGATGACTAAGAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCTCTTTTACGTGCCTATGCAAGAGCCAGATATGCTGAGGATGGCATGCTTGTGTACAAGGAGATGAAGGAAAAGGGACTGCAGTTGAATGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCCGATGTTGGCTACGTTAATGAGGCTATTGAAGTTTTTAAAGATATGAAGAGTTCTGGGACTTGCTCACCTGACAGTTGGACTTTTTCTTCCATGATCACCATATATTCCTGCAGTGGAAACGTATCAGAGGCGGAAGAAATGTTGAACGAGATGATGGAAGCCGGTTTCGACCCTAATATCTTTGTCTTGACATCATTAATCCAGTGTTATGGGAAAGCCAAACGTGTTGATGATGTAGTGAGGACATTTGATCGATTGCTAGAGTTGGGATTAACTCCAGATGACCGATTCTGTGGCTGTCTTCTCAATGTAATTACCCAGACGCCGAAACATGAACTTAGTAAGCTAATAGATTGTGTCGAGAGAGCTAATCCAAAACTCGGTTTCGTGGTGAAACTCTTGCTAGGGGAGAAGGACATGGAAGGAGATTTCAGAACTGAAGCCTCGGAACTCTTTAGTGTTGTAAGCGACGATGTGAGGAAAGCCTACTGCAATTGCTTGATTGATCTGTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAGCTGCTGGATTTGGGACTTTCGGTTCAGATATATACAGATTTGCAGTCCAGGTCTCCAACTCAGTGGTCTCTATATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAATGACTTAACAAAGGAACTGAAATCCGGGGAGGAACTTCCACCATTACTTGGAATAAATACTGGACATGGAAAACACAAATATTCCGATAAGGGTTTGTCGAGCGTCTTTGAATCGCATCTGAAGGAACTAAATGCTCCATTCCATGAGGCTCCAGAAAAGGTTGGTTGGTTTTTGACGACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAGGTTCACCTGAATTAGTGGCAGCATAG

mRNA sequence

ATGGCGTTCCAGCTCTCCCATTTTCCCTCCACCTTCTTCACCGACCATAATTCCCTCACTTTTCACTATAAAACCACTCTCTGCAAGTCCTCCTCTCGCGTTTTCAAGCTCAATCCCATACCTTATCACTCAAAACCATTCCTCCAAATTACCAATGTGTCGCCACAGGAATACGCTCCTCAAGAAACCCGGAATTCAAGCCCCTCTGATGATGAAATCTCGAAATTCCCAGATGGGAAATCCGGGTCCTCGTCGAAAACCTCCGTTTGGGTCAATCCCAGTAGCCCCAGAGCTTCGAAGCTTCGGAAGCAATCGTACGAAGCCAGGTATGCTTCTCTTAAGAAAATATCGGAGTCTTTGGACTCTTGTAATCCTTGTGAGGATGATGTTGCTGATGTCTTGAAGAGGATAGATAGTAAAATTTTAGAGCAGGACGCTATTGGAGTGCTGAATAACATGTCGAATTCCCAAACTGCGTTGCTTGTGCTTCGGTACTTTCAGGATGTGTTGAAATCAAGTAAACAAGCGGTTTTTTATAATGTGACATTGAAGGTGTTTAGGAAATGCAGAGATTTTGAGGGTGCAGAGAAACTGTTCGACGAAATGCTTGAGAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTTTGTTCATTGCCAAATAAGGCTGTTGAGTGGTTTGAGATGATGCCAAGTTTTGACTGTAATCCTGATGATATCACCTACTCTGGGATGATTGATGCCTATGGACGTGCTGGTAATGTGGACATGGCTTTCAGCTTGTATGACCGTGCAAGAACAGAAAACTGGCGTATCGATCTTTCGACATTCTCGACGATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGATGCTTGAATGTGTATGAAGAAATGAAGGCTGTAGGCATCAAGCCGAACTTGGCTATATATAACAGCTTGCTGGCTGCTATGGGTAGGGCTAAAAGACCCTGGCAGATCAAGACAATTTACAAAGAGATGACTAAGAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCTCTTTTACGTGCCTATGCAAGAGCCAGATATGCTGAGGATGGCATGCTTGTGTACAAGGAGATGAAGGAAAAGGGACTGCAGTTGAATGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCCGATGTTGGCTACGTTAATGAGGCTATTGAAGTTTTTAAAGATATGAAGAGTTCTGGGACTTGCTCACCTGACAGTTGGACTTTTTCTTCCATGATCACCATATATTCCTGCAGTGGAAACGTATCAGAGGCGGAAGAAATGTTGAACGAGATGATGGAAGCCGGTTTCGACCCTAATATCTTTGTCTTGACATCATTAATCCAGTGTTATGGGAAAGCCAAACGTGTTGATGATGTAGTGAGGACATTTGATCGATTGCTAGAGTTGGGATTAACTCCAGATGACCGATTCTGTGGCTGTCTTCTCAATGTAATTACCCAGACGCCGAAACATGAACTTAGTAAGCTAATAGATTGTGTCGAGAGAGCTAATCCAAAACTCGGTTTCGTGGTGAAACTCTTGCTAGGGGAGAAGGACATGGAAGGAGATTTCAGAACTGAAGCCTCGGAACTCTTTAGTGTTGTAAGCGACGATGTGAGGAAAGCCTACTGCAATTGCTTGATTGATCTGTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAGCTGCTGGATTTGGGACTTTCGGTTCAGATATATACAGATTTGCAGTCCAGGTCTCCAACTCAGTGGTCTCTATATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAATGACTTAACAAAGGAACTGAAATCCGGGGAGGAACTTCCACCATTACTTGGAATAAATACTGGACATGGAAAACACAAATATTCCGATAAGGGTTTGTCGAGCGTCTTTGAATCGCATCTGAAGGAACTAAATGCTCCATTCCATGAGGCTCCAGAAAAGGTTGGTTGGTTTTTGACGACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAGGTTCACCTGAATTAGTGGCAGCATAG

Coding sequence (CDS)

ATGGCGTTCCAGCTCTCCCATTTTCCCTCCACCTTCTTCACCGACCATAATTCCCTCACTTTTCACTATAAAACCACTCTCTGCAAGTCCTCCTCTCGCGTTTTCAAGCTCAATCCCATACCTTATCACTCAAAACCATTCCTCCAAATTACCAATGTGTCGCCACAGGAATACGCTCCTCAAGAAACCCGGAATTCAAGCCCCTCTGATGATGAAATCTCGAAATTCCCAGATGGGAAATCCGGGTCCTCGTCGAAAACCTCCGTTTGGGTCAATCCCAGTAGCCCCAGAGCTTCGAAGCTTCGGAAGCAATCGTACGAAGCCAGGTATGCTTCTCTTAAGAAAATATCGGAGTCTTTGGACTCTTGTAATCCTTGTGAGGATGATGTTGCTGATGTCTTGAAGAGGATAGATAGTAAAATTTTAGAGCAGGACGCTATTGGAGTGCTGAATAACATGTCGAATTCCCAAACTGCGTTGCTTGTGCTTCGGTACTTTCAGGATGTGTTGAAATCAAGTAAACAAGCGGTTTTTTATAATGTGACATTGAAGGTGTTTAGGAAATGCAGAGATTTTGAGGGTGCAGAGAAACTGTTCGACGAAATGCTTGAGAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTTTGTTCATTGCCAAATAAGGCTGTTGAGTGGTTTGAGATGATGCCAAGTTTTGACTGTAATCCTGATGATATCACCTACTCTGGGATGATTGATGCCTATGGACGTGCTGGTAATGTGGACATGGCTTTCAGCTTGTATGACCGTGCAAGAACAGAAAACTGGCGTATCGATCTTTCGACATTCTCGACGATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGATGCTTGAATGTGTATGAAGAAATGAAGGCTGTAGGCATCAAGCCGAACTTGGCTATATATAACAGCTTGCTGGCTGCTATGGGTAGGGCTAAAAGACCCTGGCAGATCAAGACAATTTACAAAGAGATGACTAAGAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCTCTTTTACGTGCCTATGCAAGAGCCAGATATGCTGAGGATGGCATGCTTGTGTACAAGGAGATGAAGGAAAAGGGACTGCAGTTGAATGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCCGATGTTGGCTACGTTAATGAGGCTATTGAAGTTTTTAAAGATATGAAGAGTTCTGGGACTTGCTCACCTGACAGTTGGACTTTTTCTTCCATGATCACCATATATTCCTGCAGTGGAAACGTATCAGAGGCGGAAGAAATGTTGAACGAGATGATGGAAGCCGGTTTCGACCCTAATATCTTTGTCTTGACATCATTAATCCAGTGTTATGGGAAAGCCAAACGTGTTGATGATGTAGTGAGGACATTTGATCGATTGCTAGAGTTGGGATTAACTCCAGATGACCGATTCTGTGGCTGTCTTCTCAATGTAATTACCCAGACGCCGAAACATGAACTTAGTAAGCTAATAGATTGTGTCGAGAGAGCTAATCCAAAACTCGGTTTCGTGGTGAAACTCTTGCTAGGGGAGAAGGACATGGAAGGAGATTTCAGAACTGAAGCCTCGGAACTCTTTAGTGTTGTAAGCGACGATGTGAGGAAAGCCTACTGCAATTGCTTGATTGATCTGTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAGCTGCTGGATTTGGGACTTTCGGTTCAGATATATACAGATTTGCAGTCCAGGTCTCCAACTCAGTGGTCTCTATATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAATGACTTAACAAAGGAACTGAAATCCGGGGAGGAACTTCCACCATTACTTGGAATAAATACTGGACATGGAAAACACAAATATTCCGATAAGGGTTTGTCGAGCGTCTTTGAATCGCATCTGAAGGAACTAAATGCTCCATTCCATGAGGCTCCAGAAAAGGTTGGTTGGTTTTTGACGACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAGGTTCACCTGAATTAGTGGCAGCATAG

Protein sequence

MAFQLSHFPSTFFTDHNSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQEYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKISESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQAVFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKDMEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSSVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA
BLAST of Cp4.1LG00g01810 vs. Swiss-Prot
Match: PP314_ARATH (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3)

HSP 1 Score: 905.2 bits (2338), Expect = 4.4e-262
Identity = 446/687 (64.92%), Postives = 549/687 (79.91%), Query Frame = 1

Query: 17  NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQEYAPQETRNSSPSDDEISKF 76
           N L+ + K+T  +S    +  N   +HS+  LQ T+VS QE  PQ  ++     D     
Sbjct: 22  NLLSVYPKSTP-RSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPE 81

Query: 77  PDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKISESLDSCNPCEDDVADVLKR 136
           P     ++SK+ VWVNP SPRAS+LR++SY++RY+SL K++ESLD+C P E DV DV+  
Sbjct: 82  P-----TASKSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITG 141

Query: 137 IDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQAVFYNVTLKVFRKCRDFEGAE 196
              K+ EQDA+  LNNM+N +TA LVL    + +K S++ + YNVT+KVFRK +D E +E
Sbjct: 142 FGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSE 201

Query: 197 KLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDCNPDDITYSGMIDAY 256
           KLFDEMLERG+KPDN TF+TIISCAR   +P +AVEWFE M SF C PD++T + MIDAY
Sbjct: 202 KLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAY 261

Query: 257 GRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLNVYEEMKAVGIKPNL 316
           GRAGNVDMA SLYDRARTE WRID  TFST+I+I+GV+GNYDGCLN+YEEMKA+G+KPNL
Sbjct: 262 GRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNL 321

Query: 317 AIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYARARYAEDGMLVYKE 376
            IYN L+ +MGRAKRPWQ K IYK++  NGF+P+W+TYA+L+RAY RARY +D + +Y+E
Sbjct: 322 VIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYRE 381

Query: 377 MKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDSWTFSSMITIYSCSG 436
           MKEKGL L VILYNTLL+MCAD  YV+EA E+F+DMK+  TC PDSWTFSS+IT+Y+CSG
Sbjct: 382 MKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSG 441

Query: 437 NVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDRLLELGLTPDDRFCG 496
            VSEAE  L +M EAGF+P +FVLTS+IQCYGKAK+VDDVVRTFD++LELG+TPDDRFCG
Sbjct: 442 RVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCG 501

Query: 497 CLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKDM-EGDFRTEASELFSVVSDD 556
           CLLNV+TQTP  E+ KLI CVE+A PKLG VVK+L+ E++  EG F+ EASEL   +  D
Sbjct: 502 CLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSD 561

Query: 557 VRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSRSPTQWSLYLKGLSLGAALT 616
           V+KAY NCLIDLCVNL+ L++ACE+L LGL   IYT LQS+S TQWSL+LK LSLGAALT
Sbjct: 562 VKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALT 621

Query: 617 ALHVWINDLTK-ELKSGEELPPLLGINTGHGKHKYSDKGLSSVFESHLKELNAPFHEAPE 676
           ALHVW+NDL++  L+SGEE PPLLGINTGHGKHKYSDKGL++VFESHLKELNAPFHEAP+
Sbjct: 622 ALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPD 681

Query: 677 KVGWFLTTKVAAKSWLESRGSPELVAA 702
           KVGWFLTT VAAK+WLESR S   V+A
Sbjct: 682 KVGWFLTTSVAAKAWLESRRSAGGVSA 702

BLAST of Cp4.1LG00g01810 vs. Swiss-Prot
Match: PP420_ARATH (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 4.2e-127
Identity = 246/622 (39.55%), Postives = 373/622 (59.97%), Query Frame = 1

Query: 84  SSKTSVWVNPSSPRASKLRKQ-------SYEARYASLKKISESLDSCNPCE-DDVADVLK 143
           S   SVWVNP+ P+ S L  Q       SY  +   L+  +  L+S    E  +   +L 
Sbjct: 86  SKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFLSLLD 145

Query: 144 RIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQAVFYNVTLKVFRKCRDFEGA 203
            I       +A+ VLN++   Q       + +       + +FYNVT+K  R  R F+  
Sbjct: 146 EIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLI 205

Query: 204 EKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDCNPDDITYSGMIDA 263
           E++  EM++ GV+ DN+T+STII+CA+ C+L NKA+EWFE M      PD++TYS ++D 
Sbjct: 206 EEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDV 265

Query: 264 YGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLNVYEEMKAVGIKPN 323
           Y ++G V+   SLY+RA    W+ D   FS + K+ G AG+YDG   V +EMK++ +KPN
Sbjct: 266 YSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPN 325

Query: 324 LAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYARARYAEDGMLVYK 383
           + +YN+LL AMGRA +P   ++++ EM + G +P+  T  +L++ Y +AR+A D + +++
Sbjct: 326 VVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWE 385

Query: 384 EMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDSWTFSSMITIYSCS 443
           EMK K   ++ ILYNTLL MCAD+G   EA  +F DMK S  C PD++++++M+ IY   
Sbjct: 386 EMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSG 445

Query: 444 GNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDRLLELGLTPDDRFC 503
           G   +A E+  EM++AG   N+   T L+QC GKAKR+DDVV  FD  ++ G+ PDDR C
Sbjct: 446 GKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLC 505

Query: 504 GCLLNVITQTPKHE-LSKLIDCVERANPKLGFVVKLLLGEKDMEGDFRTEASELFSVVSD 563
           GCLL+V+      E   K++ C+ERAN KL   V L++ EK      + E   + +    
Sbjct: 506 GCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQV 565

Query: 564 DVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSRSPTQWSLYLKGLSLGAAL 623
           + R+ +CNCLID+C   +  ++A ELL LG    +Y  L +++  +WSL ++ LS+GAA 
Sbjct: 566 EARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAE 625

Query: 624 TALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSSVFESHLKELNAPFHEAPE 683
           TAL  W+  L   +K  EELP L    TG G H++S +GL++ F  HL++L+APF ++ +
Sbjct: 626 TALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-D 685

Query: 684 KVGWFLTTKVAAKSWLESRGSP 697
           + G F+ TK    SWLES+  P
Sbjct: 686 RPGIFVATKEDLVSWLESKFPP 705

BLAST of Cp4.1LG00g01810 vs. Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.2e-46
Identity = 143/569 (25.13%), Postives = 273/569 (47.98%), Query Frame = 1

Query: 162 VLRYFQDVLKSSKQA--VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIIS 221
           V ++F ++ ++  Q   + +N  L V  +   +E A  LFDEM  R ++ D  +++T++ 
Sbjct: 323 VAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLD 382

Query: 222 CARFCSLPNKAVEWFEMMPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRI 281
                   + A E    MP     P+ ++YS +ID + +AG  D A +L+   R     +
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIAL 442

Query: 282 DLSTFSTMIKIHGVAGNYDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIY 341
           D  +++T++ I+   G  +  L++  EM +VGIK ++  YN+LL   G+  +  ++K ++
Sbjct: 443 DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502

Query: 342 KEMTKNGFSPSWATYASLLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADV 401
            EM +    P+  TY++L+  Y++    ++ M +++E K  GL+ +V+LY+ L+      
Sbjct: 503 TEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKN 562

Query: 402 GYVNEAIEVFKDMKSSGTCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFV 461
           G V  A+ +  +M   G  SP+  T++S+I  +  S  +  + +  N          +  
Sbjct: 563 GLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSA 622

Query: 462 LTS-----LIQCYGK----------------AKRVDDVVRTFDRLLELGLTPDDRFCGCL 521
           LT      +IQ +G+                 + +  ++  F ++ +L + P+      +
Sbjct: 623 LTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAI 682

Query: 522 LNVITQTPKHE-LSKLIDCVERANPKL-GFVVKLLLGEKDMEGDFRTEASELFSVVSD-- 581
           LN  ++    E  S L++ +   + K+ G V  LL+G+++   +   +A  LF  V++  
Sbjct: 683 LNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMD 742

Query: 582 -DVRKAYCNCLIDLCVNLDLLDKACELLDL-GLSVQIYTDLQSRSPTQWSLYLKGLSLGA 641
                A+ N L D+  +     +  EL+ L G S Q++ ++ S S     L L  +S GA
Sbjct: 743 GSTASAFYNALTDMLWHFG-QKRGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGA 802

Query: 642 ALTALHVWINDLTKELKSGEELPPLLGINTGHGKHK--YSDKGLSSVFESHLKELNAPFH 700
           A   +H W+ ++   +  G ELP +L I TG GKH     D  L    E  L+ ++APFH
Sbjct: 803 ARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFH 862

BLAST of Cp4.1LG00g01810 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.1e-40
Identity = 89/319 (27.90%), Postives = 163/319 (51.10%), Query Frame = 1

Query: 173 SKQAVFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVE 232
           S   V YN  L V+ K    + A K+ +EM+  G  P  VT++++IS      + ++A+E
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 233 WFEMMPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHG 292
               M      PD  TY+ ++  + RAG V+ A S+++  R    + ++ TF+  IK++G
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430

Query: 293 VAGNYDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWA 352
             G +   + +++E+   G+ P++  +N+LLA  G+     ++  ++KEM + GF P   
Sbjct: 431 NRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490

Query: 353 TYASLLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDM 412
           T+ +L+ AY+R    E  M VY+ M + G+  ++  YNT+LA  A  G   ++ +V  +M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 413 KSSGTCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKR 472
           +  G C P+  T+ S++  Y+    +     +  E+     +P   +L +L+    K   
Sbjct: 551 E-DGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 610

Query: 473 VDDVVRTFDRLLELGLTPD 492
           + +  R F  L E G +PD
Sbjct: 611 LPEAERAFSELKERGFSPD 628

BLAST of Cp4.1LG00g01810 vs. Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.7e-38
Identity = 114/516 (22.09%), Postives = 237/516 (45.93%), Query Frame = 1

Query: 184 KVFRKCRDFEGAEKLFDEMLER-GVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDC 243
           +V ++  D+  A   F  +  + G K D  T++T++             +  + M    C
Sbjct: 336 QVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGC 395

Query: 244 NPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLN 303
            P+ +TY+ +I +YGRA  ++ A +++++ +    + D  T+ T+I IH  AG  D  ++
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMD 455

Query: 304 VYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYA 363
           +Y+ M+A G+ P+   Y+ ++  +G+A        ++ EM   G +P+  TY  ++  +A
Sbjct: 456 MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHA 515

Query: 364 RARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDS 423
           +AR  ++ + +Y++M+  G + + + Y+ ++ +    GY+ EA  VF +M+      PD 
Sbjct: 516 KARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWI-PDE 575

Query: 424 WTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDR 483
             +  ++ ++  +GNV +A +    M+ AG  PN+    SL+  + +  ++ +       
Sbjct: 576 PVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQN 635

Query: 484 LLELGLTPDDRFCGCLLNVITQ-TPKHELSKLIDCV-ERANPKLGFVVKLLLGEKDMEGD 543
           +L LGL P  +    LL+  T    K ++      +    +P   F++K+     D E +
Sbjct: 636 MLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGE-N 695

Query: 544 FRTEASELFSVVSDDVR---KAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTD-LQSR 603
            R  A+    ++  + R   +   + ++D        ++A  + ++     ++ D L+ +
Sbjct: 696 VRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREK 755

Query: 604 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHK--YSDKGL 663
           S + W + L  +S G A+TAL   +    K++ +    P  + I TG G+         +
Sbjct: 756 SCSYWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMV 815

Query: 664 SSVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWL 691
               E  L    +PF       G F+ +      WL
Sbjct: 816 RQAVEELLNIFGSPFFTESGNSGCFVGSGEPLNRWL 849

BLAST of Cp4.1LG00g01810 vs. TrEMBL
Match: A0A0A0LVP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173140 PE=4 SV=1)

HSP 1 Score: 1224.9 bits (3168), Expect = 0.0e+00
Identity = 612/705 (86.81%), Postives = 652/705 (92.48%), Query Frame = 1

Query: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MAFQL + P TFFT+H    NSLT   KTTL  +SS +FKL+PIP HSKPFLQITNVS Q
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTL-SNSSPLFKLSPIPRHSKPFLQITNVSLQ 60

Query: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120
           E+APQ+T+N+ PS DEISK+PD KSGSSS +SVWVNP SPRASKLRKQSYEARYASL ++
Sbjct: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120

Query: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180
           SESLDS NPCE DVADVLK I + ILE+DAI VLNNMSNSQTALL LRYFQD+LKSSKQ 
Sbjct: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180

Query: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEM 240
           +FYNVTLKVFRKCRD EGAEKLF+EM+ RGVKPDNVTFSTIISCAR CSLP+KAVEWFE 
Sbjct: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEK 240

Query: 241 MPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300
           MPSFDCNPDD+TYS MIDAYGRAGNVDMAFSLYDRARTENWRID +TFSTMIKIHGVAGN
Sbjct: 241 MPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGN 300

Query: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360
           YDGCLNVYEEMKA+GIKPNL IYN LL AMGRAKRPWQIKTIYKEM KNGFSPSWATYAS
Sbjct: 301 YDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYAS 360

Query: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420
           LLRAY RARY ED ++VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEA+E+F+DMKSSG
Sbjct: 361 LLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480
           TCSPDSWTFSSMITIYSC G VSEAEEMLN+M+EAGFDPNIFVLTSLIQCYGKAKRVDDV
Sbjct: 421 TCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540
           VRTF++L+ELGLTPDDRFCGCLLNVITQTPK EL KLIDCV RANPKLGFVV+LLLGE+D
Sbjct: 481 VRTFNQLIELGLTPDDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540

Query: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600
            EG+FRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELLDLGL++QIY DLQSR
Sbjct: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660
           SPTQWSLYLKGLSLGAALTALHVWI DLTK L+SGEELPPLLGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 702
           VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

BLAST of Cp4.1LG00g01810 vs. TrEMBL
Match: F6HCW3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00270 PE=4 SV=1)

HSP 1 Score: 1028.9 bits (2659), Expect = 3.0e-297
Identity = 505/704 (71.73%), Postives = 591/704 (83.95%), Query Frame = 1

Query: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MA+ L   PS+   DH    NSL+F  K+ L   +S  FK N +  HS+ FLQIT+VS +
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60

Query: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120
           +  PQET+ +  S+   S+ PD K+    K+ +WVNP SPRASKLR+ SY+ARYASL KI
Sbjct: 61  DPIPQETQKADASNPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLVKI 120

Query: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180
           +ESLDSC   E+DV+ VL+ +  KILEQDA+ VLNNM+N +TALL   +F+  LK S++ 
Sbjct: 121 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 180

Query: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEM 240
           + YNVTLKVFRKCR+ + AEKLFDEMLERGVKPDN+TFSTIISCAR  SLPNKAVEWFE 
Sbjct: 181 ILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEK 240

Query: 241 MPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300
           MP F C+PDD+TYS MIDAYGRAGNVDMA  LYDRARTE WRID  TFST+I+I+G++GN
Sbjct: 241 MPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGN 300

Query: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360
           +DGCLNVYEEMKA+G+KPNL IYN+LL AMGRAKRPWQ K IYKEMT NG  PSW TYA+
Sbjct: 301 FDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAA 360

Query: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420
           LLRAY RARYAED ++VYKEMKEKGL+L+V+LYNTLLAMCADVGY  EA  +F+DMKSSG
Sbjct: 361 LLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480
            C PDSWTFSS+ITIYSCSG VSEAE MLN M+EAGF+PNIFVLTSLIQCYGKA R D+V
Sbjct: 421 NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEV 480

Query: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540
           VRTFDRLLEL +TPDDRFCGC+LNV+TQ+PK EL KLIDC+++ANPKLG VVKLLL E++
Sbjct: 481 VRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQN 540

Query: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600
            EG FR EASELF  +S DV+KAYCNCLIDLCVNL+LL+KACEL DLGL+++IY D+QS+
Sbjct: 541 GEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSK 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660
           SPTQWSL+LK LSLGAALTALH+W+NDL+K ++ GEELP +LGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVA 701
           VFESHLKELNAPFHEAP+KVGWFLTTKVAA SWLESR +PELVA
Sbjct: 661 VFESHLKELNAPFHEAPDKVGWFLTTKVAATSWLESRSAPELVA 700

BLAST of Cp4.1LG00g01810 vs. TrEMBL
Match: A0A061GPA6_THECC (Pentatricopeptide (PPR) repeat-containing protein OS=Theobroma cacao GN=TCM_030422 PE=4 SV=1)

HSP 1 Score: 1026.5 bits (2653), Expect = 1.5e-296
Identity = 496/694 (71.47%), Postives = 602/694 (86.74%), Query Frame = 1

Query: 9   PSTFFTDHNSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQEYAPQETRNSSP 68
           PS+ F D ++L+   K    +S++   +L    + SK  +QI++VS Q+   Q T+N+  
Sbjct: 10  PSSVFHDRHTLSASPKPRPARSTAPSLRLVSCSFQSKSSIQISHVSLQDPITQ-TKNTPK 69

Query: 69  SDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKISESLDSCNPCED 128
             +  S+ PDGK+GSSSK+ VWVNP SPRAS+LR+ SY++RY+SL K++E+LDSCNP E 
Sbjct: 70  HSN--SQSPDGKTGSSSKSYVWVNPRSPRASRLRQLSYDSRYSSLVKVAETLDSCNPNEH 129

Query: 129 DVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLK-SSKQAVFYNVTLKVFR 188
           DV  VL R+ + +LEQDA+ VLNNMSN  TALL L +FQ +LK +S++ + YNVT+KVFR
Sbjct: 130 DVLSVLSRLGNDVLEQDAVVVLNNMSNPHTALLALNHFQRILKKTSREVILYNVTMKVFR 189

Query: 189 KCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDCNPDDI 248
           K +D +GAEKLFDEML++GVKPDNVTFST+ISCAR C+LP+KAVEWFE MP + C+PDD+
Sbjct: 190 KSKDLDGAEKLFDEMLQKGVKPDNVTFSTLISCARVCALPDKAVEWFEKMPIYGCDPDDV 249

Query: 249 TYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLNVYEEM 308
           TYS MIDAYGRAGNVDMAF+LYDRARTE WRID  TFST+IKI+G++GNYDGCLNVYEEM
Sbjct: 250 TYSAMIDAYGRAGNVDMAFNLYDRARTEKWRIDPVTFSTLIKIYGISGNYDGCLNVYEEM 309

Query: 309 KAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYARARYA 368
           KA+G KPN+ IYN+LL AMGRAKRPWQ KTIYKEMT NGFSP+WATYA+LLRAY RARY 
Sbjct: 310 KALGAKPNVVIYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSPNWATYAALLRAYGRARYG 369

Query: 369 EDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDSWTFSS 428
           ED + +YKEMK+KGL+L VILYNTLLAMCADVGY +EA+E+F+DMK+SGTC PDSWT+SS
Sbjct: 370 EDALNIYKEMKDKGLELTVILYNTLLAMCADVGYADEAVEIFEDMKNSGTCKPDSWTYSS 429

Query: 429 MITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDRLLELG 488
           +ITIYSCSG VSEAE +++EM+EAGF+PNIFVLTSLIQCYGKA+  DDVVRTF+R+LELG
Sbjct: 430 LITIYSCSGKVSEAEGIVDEMLEAGFEPNIFVLTSLIQCYGKAQHTDDVVRTFNRVLELG 489

Query: 489 LTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKDMEGDFRTEASE 548
           +TPDDRFCGCLLNV+TQTP+ EL+KL DC+++ANPKLG VVKLL+ E+D +G+F+ EASE
Sbjct: 490 ITPDDRFCGCLLNVMTQTPREELAKLTDCIKKANPKLGHVVKLLVEEQDGQGNFKNEASE 549

Query: 549 LFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSRSPTQWSLYLKG 608
           LF+ +  DV+KAYCNCLIDLCVNLDLL++ACELL+LGLS++IY D+QSRSPTQWSL LK 
Sbjct: 550 LFNCIGSDVKKAYCNCLIDLCVNLDLLERACELLELGLSLEIYADVQSRSPTQWSLNLKS 609

Query: 609 LSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSSVFESHLKELNA 668
           LSLGAALT+LHVWINDLTK L+SGEELPPLLGINTGHGKHKYSDKGL++VFESHLKEL+A
Sbjct: 610 LSLGAALTSLHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLATVFESHLKELDA 669

Query: 669 PFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 702
           PFHEAP+KVGWFLTT+VAAKSWLESR SP+LVAA
Sbjct: 670 PFHEAPDKVGWFLTTQVAAKSWLESRSSPDLVAA 700

BLAST of Cp4.1LG00g01810 vs. TrEMBL
Match: A5B4A6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001456 PE=4 SV=1)

HSP 1 Score: 1021.5 bits (2640), Expect = 4.7e-295
Identity = 503/704 (71.45%), Postives = 588/704 (83.52%), Query Frame = 1

Query: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MA+ L   PS+   DH    NSL+F  K+ L   +S  FK N +  HS+ FLQIT+VS +
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60

Query: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120
           +  PQET+ +  S+   S+ PD K+    K+ +WVNP SPRASKLR+ SY+ARYASL KI
Sbjct: 61  DPIPQETQKADASNPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLVKI 120

Query: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180
           +ESLDSC   E+DV+ VL+ +  KILEQDA+ VLNNM+N +TALL   +F+  LK S++ 
Sbjct: 121 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 180

Query: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEM 240
           + YNVTLKVFRKCR+ + AEKLFDEMLERGVKPDN+TFSTIISCAR  SLPNKAVEWFE 
Sbjct: 181 ILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEK 240

Query: 241 MPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300
           MP F C+PDD+TYS MIDAYGRAGNVDMA  LYDRARTE WRID  TFST+I+I+G++GN
Sbjct: 241 MPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGN 300

Query: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360
           +DGCLNVYEEMKA+G+KPNL IYN+LL AMGRAKRPWQ K IYKEMT NG   SW TYA+
Sbjct: 301 FDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAA 360

Query: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420
           LLRAY RARYAED ++VYKEMKEKGL+L+V+LYNTLLAMCADVGY  EA  +F+DMKSSG
Sbjct: 361 LLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480
            C PDSWTFSS+ITIYSCSG VSEAE MLN M+EAGF+PNIFVLTSLIQCYGKA R D+V
Sbjct: 421 NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEV 480

Query: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540
           VRTFDRLLEL +TPDDRFCGC+LNV+TQ+PK EL KLIDC+++ANPKLG VVKLLL E++
Sbjct: 481 VRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQN 540

Query: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600
            EG FR EASELF  +S DV KAYCNCLIDLCVNL+LL+KACEL DLGL+++IY D+QS+
Sbjct: 541 GEGTFRKEASELFDSISADVXKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSK 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660
           SPTQWSL+LK LSLGAALTALH+W+NDL+K ++ GEELP +LGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVA 701
           VFESHLKELNAPFHEAP+KV WFLTTKVAA SWLESR +PELVA
Sbjct: 661 VFESHLKELNAPFHEAPDKVXWFLTTKVAATSWLESRSAPELVA 700

BLAST of Cp4.1LG00g01810 vs. TrEMBL
Match: M5WLZ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002169mg PE=4 SV=1)

HSP 1 Score: 989.9 bits (2558), Expect = 1.5e-285
Identity = 492/706 (69.69%), Postives = 583/706 (82.58%), Query Frame = 1

Query: 1   MAFQLSHFPSTFF----TDHNSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MA+ L   PS+ F    T  +SL       L  S  R  KL+    H++  LQI +VS Q
Sbjct: 1   MAYHLCSSPSSLFPNRQTPSHSLPSPRGFRLGSSGLRTLKLSFPSLHARTSLQINHVSLQ 60

Query: 61  EYAPQETRN-SSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKK 120
           E   QET+  ++  + E  +  +  SGS SK+ +WVNPSSPRAS+LR++SY++RYASL K
Sbjct: 61  EPVAQETQTPTNVPEVESPQRQNRNSGSLSKSYIWVNPSSPRASQLRQKSYDSRYASLVK 120

Query: 121 ISESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQ 180
           ++E L+SC+P E+DV + LK +  +ILEQDA+ VLNNM+N + ALL L+YFQ  LK  ++
Sbjct: 121 VAEYLNSCSPSENDVFEALKGLGDRILEQDAVVVLNNMTNPENALLALKYFQQNLKPKRE 180

Query: 181 AVFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFE 240
            + YNVTLKV RK +D + AEKLFDE+L+RGV+PDNVTFST+ISCAR  SLP+KAVEWFE
Sbjct: 181 VILYNVTLKVCRKGKDLDRAEKLFDELLKRGVQPDNVTFSTMISCARMSSLPDKAVEWFE 240

Query: 241 MMPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAG 300
            MPSF CNPDD+TYS MIDAYGR+G VDMAFSLYDRART  WRID  TFST+IKIHG +G
Sbjct: 241 KMPSFGCNPDDVTYSAMIDAYGRSGKVDMAFSLYDRARTSKWRIDPVTFSTLIKIHGQSG 300

Query: 301 NYDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYA 360
           N+DGCLNVYEEMKA+G KPNL IYN+LL AMGRAKRPWQ K IY+EM    FSP+W TYA
Sbjct: 301 NFDGCLNVYEEMKAIGAKPNLVIYNTLLDAMGRAKRPWQAKKIYREMINKEFSPNWVTYA 360

Query: 361 SLLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSS 420
           +LLRAY RARY +D + VY+EMKEKG++LNVILYNTLLAMCADVGY +EA+E+FKDMKSS
Sbjct: 361 ALLRAYGRARYGDDALNVYREMKEKGMELNVILYNTLLAMCADVGYADEAVEIFKDMKSS 420

Query: 421 GTCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDD 480
            T  PDSWTFSSMITIYSCSG V+EAE MLNEM+EAGF PNIF+LTSLIQCYGKAKR DD
Sbjct: 421 ETWKPDSWTFSSMITIYSCSGKVTEAETMLNEMLEAGFQPNIFILTSLIQCYGKAKRTDD 480

Query: 481 VVRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEK 540
           VVR F++LLELG+TPD+RFCGCLLNV+TQTPK EL KL +C+ERA+ KLG+VV+LL+ ++
Sbjct: 481 VVRIFNQLLELGITPDERFCGCLLNVMTQTPKEELCKLANCIERADEKLGYVVRLLVEKQ 540

Query: 541 DMEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQS 600
           D   +F+ EASELF+ +  DV+KAYCNCLIDLCVNLDLL++ACELLDLGL++QIY D+QS
Sbjct: 541 DNSVNFKKEASELFNSIGSDVKKAYCNCLIDLCVNLDLLERACELLDLGLTLQIYIDIQS 600

Query: 601 RSPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLS 660
           RS TQWSLYLKGLSLGAALTALHVWINDL++ L+SGEELPPLLGINTGHGKHKYSDKGL+
Sbjct: 601 RSQTQWSLYLKGLSLGAALTALHVWINDLSRVLESGEELPPLLGINTGHGKHKYSDKGLA 660

Query: 661 SVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 702
           SVFESHLKELNAPFHEAP+K GWFLTTKVA KSWLESR S ELVAA
Sbjct: 661 SVFESHLKELNAPFHEAPDKAGWFLTTKVAVKSWLESRSSSELVAA 706

BLAST of Cp4.1LG00g01810 vs. TAIR10
Match: AT4G16390.1 (AT4G16390.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 905.2 bits (2338), Expect = 2.5e-263
Identity = 446/687 (64.92%), Postives = 549/687 (79.91%), Query Frame = 1

Query: 17  NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQEYAPQETRNSSPSDDEISKF 76
           N L+ + K+T  +S    +  N   +HS+  LQ T+VS QE  PQ  ++     D     
Sbjct: 22  NLLSVYPKSTP-RSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPE 81

Query: 77  PDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKISESLDSCNPCEDDVADVLKR 136
           P     ++SK+ VWVNP SPRAS+LR++SY++RY+SL K++ESLD+C P E DV DV+  
Sbjct: 82  P-----TASKSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITG 141

Query: 137 IDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQAVFYNVTLKVFRKCRDFEGAE 196
              K+ EQDA+  LNNM+N +TA LVL    + +K S++ + YNVT+KVFRK +D E +E
Sbjct: 142 FGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSE 201

Query: 197 KLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDCNPDDITYSGMIDAY 256
           KLFDEMLERG+KPDN TF+TIISCAR   +P +AVEWFE M SF C PD++T + MIDAY
Sbjct: 202 KLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAY 261

Query: 257 GRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLNVYEEMKAVGIKPNL 316
           GRAGNVDMA SLYDRARTE WRID  TFST+I+I+GV+GNYDGCLN+YEEMKA+G+KPNL
Sbjct: 262 GRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNL 321

Query: 317 AIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYARARYAEDGMLVYKE 376
            IYN L+ +MGRAKRPWQ K IYK++  NGF+P+W+TYA+L+RAY RARY +D + +Y+E
Sbjct: 322 VIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYRE 381

Query: 377 MKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDSWTFSSMITIYSCSG 436
           MKEKGL L VILYNTLL+MCAD  YV+EA E+F+DMK+  TC PDSWTFSS+IT+Y+CSG
Sbjct: 382 MKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSG 441

Query: 437 NVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDRLLELGLTPDDRFCG 496
            VSEAE  L +M EAGF+P +FVLTS+IQCYGKAK+VDDVVRTFD++LELG+TPDDRFCG
Sbjct: 442 RVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCG 501

Query: 497 CLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKDM-EGDFRTEASELFSVVSDD 556
           CLLNV+TQTP  E+ KLI CVE+A PKLG VVK+L+ E++  EG F+ EASEL   +  D
Sbjct: 502 CLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSD 561

Query: 557 VRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSRSPTQWSLYLKGLSLGAALT 616
           V+KAY NCLIDLCVNL+ L++ACE+L LGL   IYT LQS+S TQWSL+LK LSLGAALT
Sbjct: 562 VKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALT 621

Query: 617 ALHVWINDLTK-ELKSGEELPPLLGINTGHGKHKYSDKGLSSVFESHLKELNAPFHEAPE 676
           ALHVW+NDL++  L+SGEE PPLLGINTGHGKHKYSDKGL++VFESHLKELNAPFHEAP+
Sbjct: 622 ALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPD 681

Query: 677 KVGWFLTTKVAAKSWLESRGSPELVAA 702
           KVGWFLTT VAAK+WLESR S   V+A
Sbjct: 682 KVGWFLTTSVAAKAWLESRRSAGGVSA 702

BLAST of Cp4.1LG00g01810 vs. TAIR10
Match: AT5G46580.1 (AT5G46580.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 456.8 bits (1174), Expect = 2.3e-128
Identity = 246/622 (39.55%), Postives = 373/622 (59.97%), Query Frame = 1

Query: 84  SSKTSVWVNPSSPRASKLRKQ-------SYEARYASLKKISESLDSCNPCE-DDVADVLK 143
           S   SVWVNP+ P+ S L  Q       SY  +   L+  +  L+S    E  +   +L 
Sbjct: 86  SKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFLSLLD 145

Query: 144 RIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQAVFYNVTLKVFRKCRDFEGA 203
            I       +A+ VLN++   Q       + +       + +FYNVT+K  R  R F+  
Sbjct: 146 EIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLI 205

Query: 204 EKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDCNPDDITYSGMIDA 263
           E++  EM++ GV+ DN+T+STII+CA+ C+L NKA+EWFE M      PD++TYS ++D 
Sbjct: 206 EEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDV 265

Query: 264 YGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLNVYEEMKAVGIKPN 323
           Y ++G V+   SLY+RA    W+ D   FS + K+ G AG+YDG   V +EMK++ +KPN
Sbjct: 266 YSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPN 325

Query: 324 LAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYARARYAEDGMLVYK 383
           + +YN+LL AMGRA +P   ++++ EM + G +P+  T  +L++ Y +AR+A D + +++
Sbjct: 326 VVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWE 385

Query: 384 EMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDSWTFSSMITIYSCS 443
           EMK K   ++ ILYNTLL MCAD+G   EA  +F DMK S  C PD++++++M+ IY   
Sbjct: 386 EMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSG 445

Query: 444 GNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDRLLELGLTPDDRFC 503
           G   +A E+  EM++AG   N+   T L+QC GKAKR+DDVV  FD  ++ G+ PDDR C
Sbjct: 446 GKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLC 505

Query: 504 GCLLNVITQTPKHE-LSKLIDCVERANPKLGFVVKLLLGEKDMEGDFRTEASELFSVVSD 563
           GCLL+V+      E   K++ C+ERAN KL   V L++ EK      + E   + +    
Sbjct: 506 GCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQV 565

Query: 564 DVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSRSPTQWSLYLKGLSLGAAL 623
           + R+ +CNCLID+C   +  ++A ELL LG    +Y  L +++  +WSL ++ LS+GAA 
Sbjct: 566 EARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAE 625

Query: 624 TALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSSVFESHLKELNAPFHEAPE 683
           TAL  W+  L   +K  EELP L    TG G H++S +GL++ F  HL++L+APF ++ +
Sbjct: 626 TALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-D 685

Query: 684 KVGWFLTTKVAAKSWLESRGSP 697
           + G F+ TK    SWLES+  P
Sbjct: 686 RPGIFVATKEDLVSWLESKFPP 705

BLAST of Cp4.1LG00g01810 vs. TAIR10
Match: AT2G31400.1 (AT2G31400.1 genomes uncoupled 1)

HSP 1 Score: 189.5 bits (480), Expect = 7.0e-48
Identity = 143/569 (25.13%), Postives = 273/569 (47.98%), Query Frame = 1

Query: 162 VLRYFQDVLKSSKQA--VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIIS 221
           V ++F ++ ++  Q   + +N  L V  +   +E A  LFDEM  R ++ D  +++T++ 
Sbjct: 323 VAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLD 382

Query: 222 CARFCSLPNKAVEWFEMMPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRI 281
                   + A E    MP     P+ ++YS +ID + +AG  D A +L+   R     +
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIAL 442

Query: 282 DLSTFSTMIKIHGVAGNYDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIY 341
           D  +++T++ I+   G  +  L++  EM +VGIK ++  YN+LL   G+  +  ++K ++
Sbjct: 443 DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502

Query: 342 KEMTKNGFSPSWATYASLLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADV 401
            EM +    P+  TY++L+  Y++    ++ M +++E K  GL+ +V+LY+ L+      
Sbjct: 503 TEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKN 562

Query: 402 GYVNEAIEVFKDMKSSGTCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFV 461
           G V  A+ +  +M   G  SP+  T++S+I  +  S  +  + +  N          +  
Sbjct: 563 GLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSA 622

Query: 462 LTS-----LIQCYGK----------------AKRVDDVVRTFDRLLELGLTPDDRFCGCL 521
           LT      +IQ +G+                 + +  ++  F ++ +L + P+      +
Sbjct: 623 LTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAI 682

Query: 522 LNVITQTPKHE-LSKLIDCVERANPKL-GFVVKLLLGEKDMEGDFRTEASELFSVVSD-- 581
           LN  ++    E  S L++ +   + K+ G V  LL+G+++   +   +A  LF  V++  
Sbjct: 683 LNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMD 742

Query: 582 -DVRKAYCNCLIDLCVNLDLLDKACELLDL-GLSVQIYTDLQSRSPTQWSLYLKGLSLGA 641
                A+ N L D+  +     +  EL+ L G S Q++ ++ S S     L L  +S GA
Sbjct: 743 GSTASAFYNALTDMLWHFG-QKRGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGA 802

Query: 642 ALTALHVWINDLTKELKSGEELPPLLGINTGHGKHK--YSDKGLSSVFESHLKELNAPFH 700
           A   +H W+ ++   +  G ELP +L I TG GKH     D  L    E  L+ ++APFH
Sbjct: 803 ARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFH 862

BLAST of Cp4.1LG00g01810 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-41
Identity = 89/319 (27.90%), Postives = 163/319 (51.10%), Query Frame = 1

Query: 173 SKQAVFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVE 232
           S   V YN  L V+ K    + A K+ +EM+  G  P  VT++++IS      + ++A+E
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 233 WFEMMPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHG 292
               M      PD  TY+ ++  + RAG V+ A S+++  R    + ++ TF+  IK++G
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430

Query: 293 VAGNYDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWA 352
             G +   + +++E+   G+ P++  +N+LLA  G+     ++  ++KEM + GF P   
Sbjct: 431 NRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490

Query: 353 TYASLLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDM 412
           T+ +L+ AY+R    E  M VY+ M + G+  ++  YNT+LA  A  G   ++ +V  +M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 413 KSSGTCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKR 472
           +  G C P+  T+ S++  Y+    +     +  E+     +P   +L +L+    K   
Sbjct: 551 E-DGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDL 610

Query: 473 VDDVVRTFDRLLELGLTPD 492
           + +  R F  L E G +PD
Sbjct: 611 LPEAERAFSELKERGFSPD 628

BLAST of Cp4.1LG00g01810 vs. TAIR10
Match: AT1G18900.3 (AT1G18900.3 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-39
Identity = 114/516 (22.09%), Postives = 237/516 (45.93%), Query Frame = 1

Query: 184 KVFRKCRDFEGAEKLFDEMLER-GVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDC 243
           +V ++  D+  A   F  +  + G K D  T++T++             +  + M    C
Sbjct: 336 QVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGC 395

Query: 244 NPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLN 303
            P+ +TY+ +I +YGRA  ++ A +++++ +    + D  T+ T+I IH  AG  D  ++
Sbjct: 396 QPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMD 455

Query: 304 VYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYA 363
           +Y+ M+A G+ P+   Y+ ++  +G+A        ++ EM   G +P+  TY  ++  +A
Sbjct: 456 MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHA 515

Query: 364 RARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDS 423
           +AR  ++ + +Y++M+  G + + + Y+ ++ +    GY+ EA  VF +M+      PD 
Sbjct: 516 KARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWI-PDE 575

Query: 424 WTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDR 483
             +  ++ ++  +GNV +A +    M+ AG  PN+    SL+  + +  ++ +       
Sbjct: 576 PVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQN 635

Query: 484 LLELGLTPDDRFCGCLLNVITQ-TPKHELSKLIDCV-ERANPKLGFVVKLLLGEKDMEGD 543
           +L LGL P  +    LL+  T    K ++      +    +P   F++K+     D E +
Sbjct: 636 MLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGE-N 695

Query: 544 FRTEASELFSVVSDDVR---KAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTD-LQSR 603
            R  A+    ++  + R   +   + ++D        ++A  + ++     ++ D L+ +
Sbjct: 696 VRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREK 755

Query: 604 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHK--YSDKGL 663
           S + W + L  +S G A+TAL   +    K++ +    P  + I TG G+         +
Sbjct: 756 SCSYWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMV 815

Query: 664 SSVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWL 691
               E  L    +PF       G F+ +      WL
Sbjct: 816 RQAVEELLNIFGSPFFTESGNSGCFVGSGEPLNRWL 849

BLAST of Cp4.1LG00g01810 vs. NCBI nr
Match: gi|659128601|ref|XP_008464281.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis melo])

HSP 1 Score: 1233.8 bits (3191), Expect = 0.0e+00
Identity = 615/705 (87.23%), Postives = 655/705 (92.91%), Query Frame = 1

Query: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MAFQL H P TFFT H    NSLT   KTTL  +SS +FKLNPIP HS PFLQITN+S Q
Sbjct: 1   MAFQLCHSPPTFFTYHHSLSNSLTPQRKTTL-SNSSPLFKLNPIPRHSTPFLQITNISLQ 60

Query: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120
           E++PQET N+ PSDDEISK+ D KSGSSSK+SVWVNP SPRASKLRKQSYEARYASL +I
Sbjct: 61  EHSPQETHNTIPSDDEISKYSDAKSGSSSKSSVWVNPRSPRASKLRKQSYEARYASLVRI 120

Query: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180
           SESLDSCNPCE DVADVLK I + ILEQDA+ VLNNMSNSQTALL LRYFQD+LKSSKQ 
Sbjct: 121 SESLDSCNPCEVDVADVLKVIGNNILEQDAVVVLNNMSNSQTALLALRYFQDMLKSSKQT 180

Query: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEM 240
           +FYNVTLKVFRKCRD EGAE+LF+EML RGVKPDNVTFSTIISCAR CSLP+KAVEWFE 
Sbjct: 181 IFYNVTLKVFRKCRDMEGAEELFEEMLNRGVKPDNVTFSTIISCARLCSLPSKAVEWFEK 240

Query: 241 MPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300
           MPSFDCNPDD+TYS MIDAYGRAGNVDMAFSLYDRARTENWRID +TFSTMIKIHGVAGN
Sbjct: 241 MPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGN 300

Query: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360
           YDGCLNVYEEMKA+GIKPNL IYNSLL AMGRAKRPWQIKTIYKEM K+GFSPSWATYAS
Sbjct: 301 YDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKSGFSPSWATYAS 360

Query: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420
           LLRAY RARY ED ++VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEA+E+F+DMK+SG
Sbjct: 361 LLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKNSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480
           TCSPDSWTFSSMITIYSCSG VSEAEEMLN+M+EAGFDPNIFVLTSLIQCYGKAKRVDDV
Sbjct: 421 TCSPDSWTFSSMITIYSCSGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540
           VRTF++L+ELGLTPDDRFCGCLLNVITQTPK E+SKLIDCV RANPKLGFVV+LLLGE+D
Sbjct: 481 VRTFNQLIELGLTPDDRFCGCLLNVITQTPKEEISKLIDCVVRANPKLGFVVELLLGEQD 540

Query: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600
            EG+FRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELL+LGL++QIY DLQSR
Sbjct: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLNLGLTLQIYKDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660
           SPTQWSLYLKGLSLGAALTALHVWINDLTK L+SGEELPPLLGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 702
           VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

BLAST of Cp4.1LG00g01810 vs. NCBI nr
Match: gi|449443502|ref|XP_004139516.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis sativus])

HSP 1 Score: 1224.9 bits (3168), Expect = 0.0e+00
Identity = 612/705 (86.81%), Postives = 652/705 (92.48%), Query Frame = 1

Query: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MAFQL + P TFFT+H    NSLT   KTTL  +SS +FKL+PIP HSKPFLQITNVS Q
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTL-SNSSPLFKLSPIPRHSKPFLQITNVSLQ 60

Query: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120
           E+APQ+T+N+ PS DEISK+PD KSGSSS +SVWVNP SPRASKLRKQSYEARYASL ++
Sbjct: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120

Query: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180
           SESLDS NPCE DVADVLK I + ILE+DAI VLNNMSNSQTALL LRYFQD+LKSSKQ 
Sbjct: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180

Query: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEM 240
           +FYNVTLKVFRKCRD EGAEKLF+EM+ RGVKPDNVTFSTIISCAR CSLP+KAVEWFE 
Sbjct: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEK 240

Query: 241 MPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300
           MPSFDCNPDD+TYS MIDAYGRAGNVDMAFSLYDRARTENWRID +TFSTMIKIHGVAGN
Sbjct: 241 MPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGN 300

Query: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360
           YDGCLNVYEEMKA+GIKPNL IYN LL AMGRAKRPWQIKTIYKEM KNGFSPSWATYAS
Sbjct: 301 YDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYAS 360

Query: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420
           LLRAY RARY ED ++VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEA+E+F+DMKSSG
Sbjct: 361 LLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480
           TCSPDSWTFSSMITIYSC G VSEAEEMLN+M+EAGFDPNIFVLTSLIQCYGKAKRVDDV
Sbjct: 421 TCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540
           VRTF++L+ELGLTPDDRFCGCLLNVITQTPK EL KLIDCV RANPKLGFVV+LLLGE+D
Sbjct: 481 VRTFNQLIELGLTPDDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540

Query: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600
            EG+FRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELLDLGL++QIY DLQSR
Sbjct: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660
           SPTQWSLYLKGLSLGAALTALHVWI DLTK L+SGEELPPLLGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 702
           VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

BLAST of Cp4.1LG00g01810 vs. NCBI nr
Match: gi|359495626|ref|XP_002269600.2| (PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Vitis vinifera])

HSP 1 Score: 1028.9 bits (2659), Expect = 4.2e-297
Identity = 505/704 (71.73%), Postives = 591/704 (83.95%), Query Frame = 1

Query: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MA+ L   PS+   DH    NSL+F  K+ L   +S  FK N +  HS+ FLQIT+VS +
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60

Query: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120
           +  PQET+ +  S+   S+ PD K+    K+ +WVNP SPRASKLR+ SY+ARYASL KI
Sbjct: 61  DPIPQETQKADASNPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLVKI 120

Query: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180
           +ESLDSC   E+DV+ VL+ +  KILEQDA+ VLNNM+N +TALL   +F+  LK S++ 
Sbjct: 121 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 180

Query: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEM 240
           + YNVTLKVFRKCR+ + AEKLFDEMLERGVKPDN+TFSTIISCAR  SLPNKAVEWFE 
Sbjct: 181 ILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEK 240

Query: 241 MPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300
           MP F C+PDD+TYS MIDAYGRAGNVDMA  LYDRARTE WRID  TFST+I+I+G++GN
Sbjct: 241 MPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGN 300

Query: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360
           +DGCLNVYEEMKA+G+KPNL IYN+LL AMGRAKRPWQ K IYKEMT NG  PSW TYA+
Sbjct: 301 FDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAA 360

Query: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420
           LLRAY RARYAED ++VYKEMKEKGL+L+V+LYNTLLAMCADVGY  EA  +F+DMKSSG
Sbjct: 361 LLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480
            C PDSWTFSS+ITIYSCSG VSEAE MLN M+EAGF+PNIFVLTSLIQCYGKA R D+V
Sbjct: 421 NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEV 480

Query: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540
           VRTFDRLLEL +TPDDRFCGC+LNV+TQ+PK EL KLIDC+++ANPKLG VVKLLL E++
Sbjct: 481 VRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQN 540

Query: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600
            EG FR EASELF  +S DV+KAYCNCLIDLCVNL+LL+KACEL DLGL+++IY D+QS+
Sbjct: 541 GEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSK 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660
           SPTQWSL+LK LSLGAALTALH+W+NDL+K ++ GEELP +LGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVA 701
           VFESHLKELNAPFHEAP+KVGWFLTTKVAA SWLESR +PELVA
Sbjct: 661 VFESHLKELNAPFHEAPDKVGWFLTTKVAATSWLESRSAPELVA 700

BLAST of Cp4.1LG00g01810 vs. NCBI nr
Match: gi|590627062|ref|XP_007026347.1| (Pentatricopeptide (PPR) repeat-containing protein [Theobroma cacao])

HSP 1 Score: 1026.5 bits (2653), Expect = 2.1e-296
Identity = 496/694 (71.47%), Postives = 602/694 (86.74%), Query Frame = 1

Query: 9   PSTFFTDHNSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQEYAPQETRNSSP 68
           PS+ F D ++L+   K    +S++   +L    + SK  +QI++VS Q+   Q T+N+  
Sbjct: 10  PSSVFHDRHTLSASPKPRPARSTAPSLRLVSCSFQSKSSIQISHVSLQDPITQ-TKNTPK 69

Query: 69  SDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKISESLDSCNPCED 128
             +  S+ PDGK+GSSSK+ VWVNP SPRAS+LR+ SY++RY+SL K++E+LDSCNP E 
Sbjct: 70  HSN--SQSPDGKTGSSSKSYVWVNPRSPRASRLRQLSYDSRYSSLVKVAETLDSCNPNEH 129

Query: 129 DVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLK-SSKQAVFYNVTLKVFR 188
           DV  VL R+ + +LEQDA+ VLNNMSN  TALL L +FQ +LK +S++ + YNVT+KVFR
Sbjct: 130 DVLSVLSRLGNDVLEQDAVVVLNNMSNPHTALLALNHFQRILKKTSREVILYNVTMKVFR 189

Query: 189 KCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEMMPSFDCNPDDI 248
           K +D +GAEKLFDEML++GVKPDNVTFST+ISCAR C+LP+KAVEWFE MP + C+PDD+
Sbjct: 190 KSKDLDGAEKLFDEMLQKGVKPDNVTFSTLISCARVCALPDKAVEWFEKMPIYGCDPDDV 249

Query: 249 TYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGNYDGCLNVYEEM 308
           TYS MIDAYGRAGNVDMAF+LYDRARTE WRID  TFST+IKI+G++GNYDGCLNVYEEM
Sbjct: 250 TYSAMIDAYGRAGNVDMAFNLYDRARTEKWRIDPVTFSTLIKIYGISGNYDGCLNVYEEM 309

Query: 309 KAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYASLLRAYARARYA 368
           KA+G KPN+ IYN+LL AMGRAKRPWQ KTIYKEMT NGFSP+WATYA+LLRAY RARY 
Sbjct: 310 KALGAKPNVVIYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSPNWATYAALLRAYGRARYG 369

Query: 369 EDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSGTCSPDSWTFSS 428
           ED + +YKEMK+KGL+L VILYNTLLAMCADVGY +EA+E+F+DMK+SGTC PDSWT+SS
Sbjct: 370 EDALNIYKEMKDKGLELTVILYNTLLAMCADVGYADEAVEIFEDMKNSGTCKPDSWTYSS 429

Query: 429 MITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFDRLLELG 488
           +ITIYSCSG VSEAE +++EM+EAGF+PNIFVLTSLIQCYGKA+  DDVVRTF+R+LELG
Sbjct: 430 LITIYSCSGKVSEAEGIVDEMLEAGFEPNIFVLTSLIQCYGKAQHTDDVVRTFNRVLELG 489

Query: 489 LTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKDMEGDFRTEASE 548
           +TPDDRFCGCLLNV+TQTP+ EL+KL DC+++ANPKLG VVKLL+ E+D +G+F+ EASE
Sbjct: 490 ITPDDRFCGCLLNVMTQTPREELAKLTDCIKKANPKLGHVVKLLVEEQDGQGNFKNEASE 549

Query: 549 LFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSRSPTQWSLYLKG 608
           LF+ +  DV+KAYCNCLIDLCVNLDLL++ACELL+LGLS++IY D+QSRSPTQWSL LK 
Sbjct: 550 LFNCIGSDVKKAYCNCLIDLCVNLDLLERACELLELGLSLEIYADVQSRSPTQWSLNLKS 609

Query: 609 LSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSSVFESHLKELNA 668
           LSLGAALT+LHVWINDLTK L+SGEELPPLLGINTGHGKHKYSDKGL++VFESHLKEL+A
Sbjct: 610 LSLGAALTSLHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLATVFESHLKELDA 669

Query: 669 PFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 702
           PFHEAP+KVGWFLTT+VAAKSWLESR SP+LVAA
Sbjct: 670 PFHEAPDKVGWFLTTQVAAKSWLESRSSPDLVAA 700

BLAST of Cp4.1LG00g01810 vs. NCBI nr
Match: gi|147841962|emb|CAN63129.1| (hypothetical protein VITISV_001456 [Vitis vinifera])

HSP 1 Score: 1021.5 bits (2640), Expect = 6.8e-295
Identity = 503/704 (71.45%), Postives = 588/704 (83.52%), Query Frame = 1

Query: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60
           MA+ L   PS+   DH    NSL+F  K+ L   +S  FK N +  HS+ FLQIT+VS +
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60

Query: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120
           +  PQET+ +  S+   S+ PD K+    K+ +WVNP SPRASKLR+ SY+ARYASL KI
Sbjct: 61  DPIPQETQKADASNPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLVKI 120

Query: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180
           +ESLDSC   E+DV+ VL+ +  KILEQDA+ VLNNM+N +TALL   +F+  LK S++ 
Sbjct: 121 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 180

Query: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFCSLPNKAVEWFEM 240
           + YNVTLKVFRKCR+ + AEKLFDEMLERGVKPDN+TFSTIISCAR  SLPNKAVEWFE 
Sbjct: 181 ILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEK 240

Query: 241 MPSFDCNPDDITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300
           MP F C+PDD+TYS MIDAYGRAGNVDMA  LYDRARTE WRID  TFST+I+I+G++GN
Sbjct: 241 MPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGN 300

Query: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360
           +DGCLNVYEEMKA+G+KPNL IYN+LL AMGRAKRPWQ K IYKEMT NG   SW TYA+
Sbjct: 301 FDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAA 360

Query: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420
           LLRAY RARYAED ++VYKEMKEKGL+L+V+LYNTLLAMCADVGY  EA  +F+DMKSSG
Sbjct: 361 LLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480
            C PDSWTFSS+ITIYSCSG VSEAE MLN M+EAGF+PNIFVLTSLIQCYGKA R D+V
Sbjct: 421 NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEV 480

Query: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540
           VRTFDRLLEL +TPDDRFCGC+LNV+TQ+PK EL KLIDC+++ANPKLG VVKLLL E++
Sbjct: 481 VRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQN 540

Query: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600
            EG FR EASELF  +S DV KAYCNCLIDLCVNL+LL+KACEL DLGL+++IY D+QS+
Sbjct: 541 GEGTFRKEASELFDSISADVXKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSK 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660
           SPTQWSL+LK LSLGAALTALH+W+NDL+K ++ GEELP +LGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVA 701
           VFESHLKELNAPFHEAP+KV WFLTTKVAA SWLESR +PELVA
Sbjct: 661 VFESHLKELNAPFHEAPDKVXWFLTTKVAATSWLESRSAPELVA 700

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP314_ARATH4.4e-26264.92Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidop... [more]
PP420_ARATH4.2e-12739.55Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidop... [more]
PP178_ARATH1.2e-4625.13Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop... [more]
PP362_ARATH5.1e-4027.90Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN... [more]
PPR49_ARATH4.7e-3822.09Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0LVP1_CUCSA0.0e+0086.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173140 PE=4 SV=1[more]
F6HCW3_VITVI3.0e-29771.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00270 PE=4 SV=... [more]
A0A061GPA6_THECC1.5e-29671.47Pentatricopeptide (PPR) repeat-containing protein OS=Theobroma cacao GN=TCM_0304... [more]
A5B4A6_VITVI4.7e-29571.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001456 PE=4 SV=1[more]
M5WLZ8_PRUPE1.5e-28569.69Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002169mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16390.12.5e-26364.92 pentatricopeptide (PPR) repeat-containing protein[more]
AT5G46580.12.3e-12839.55 pentatricopeptide (PPR) repeat-containing protein[more]
AT2G31400.17.0e-4825.13 genomes uncoupled 1[more]
AT5G02860.12.8e-4127.90 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G18900.32.7e-3922.09 Pentatricopeptide repeat (PPR) superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659128601|ref|XP_008464281.1|0.0e+0087.23PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic ... [more]
gi|449443502|ref|XP_004139516.1|0.0e+0086.81PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic ... [more]
gi|359495626|ref|XP_002269600.2|4.2e-29771.73PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic ... [more]
gi|590627062|ref|XP_007026347.1|2.1e-29671.47Pentatricopeptide (PPR) repeat-containing protein [Theobroma cacao][more]
gi|147841962|emb|CAN63129.1|6.8e-29571.45hypothetical protein VITISV_001456 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR002625Smr_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0009658 chloroplast organization
biological_process GO:0031425 chloroplast RNA processing
biological_process GO:0045727 positive regulation of translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g01810.1Cp4.1LG00g01810.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002625Smr domainSMARTSM00463SMR_2coord: 600..690
score: 8.7
IPR002625Smr domainPROFILEPS50828SMRcoord: 603..687
score: 17
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 460..488
score: 0.0031coord: 424..453
score: 8.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 176..220
score: 1.9
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 353..385
score: 1.4E-6coord: 460..491
score: 8.1E-6coord: 318..351
score: 5.3E-4coord: 247..280
score: 7.7E-7coord: 179..210
score: 1.8E-6coord: 388..421
score: 2.6E-6coord: 424..456
score: 7.6E-8coord: 283..315
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 245..279
score: 10.337coord: 315..349
score: 10.293coord: 421..455
score: 11.937coord: 456..490
score: 10.6coord: 350..384
score: 10.501coord: 385..419
score: 10.819coord: 280..314
score: 10.885coord: 175..209
score: 11.246coord: 210..244
score: 8
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 185..205
score: 1.3E-9coord: 243..486
score: 1.
IPR011990Tetratricopeptide-like helical domainunknownSSF48452TPR-likecoord: 294..314
score: 8.91E-5coord: 349..489
score: 8.9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 54..104
score: 1.1E-192coord: 120..496
score: 1.1E-192coord: 563..582
score: 1.1E
NoneNo IPR availablePANTHERPTHR24015:SF437SUBFAMILY NOT NAMEDcoord: 120..496
score: 1.1E-192coord: 54..104
score: 1.1E-192coord: 563..582
score: 1.1E
NoneNo IPR availableunknownSSF81901HCP-likecoord: 165..320
score: 8.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g01810Melon (DHL92) v3.5.1cpemeB004