Cp4.1LG00g01220 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g01220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cytochrome c
Location	Cp4.1LG00 : 3163878 .. 3167546 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGAGAACTGGAAGAAGACAATTAAGGCCCTATGCGGTGCGTTGGTATAAAAGGATGCAGCGTATGGAGACCACGAGAAACATTGCGAGCCCTAGCCCTCAGATCTGAACAACATCTCATTCCAACGCCATGGCCAGCTTTGACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATTTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAGGGTGCTGGTCACAAGCAAGGTTAGAGATTATCATTTCTTATTTATATGTTTGGGTTTCTTGCGATTCGAGATCGGAGGTTAGAGATCTCGAAGTCTCTATTAGTATTCTGAACATGTTCGTCCATCTTTGAGGATTCATGCTGAGTTTTGCTACGGTTGAATCGATCTGATCGTTTTCTCTGTTTTCCCCCAATATACTCTAGGAAACTAATACCTAGTATTGGCCTTCATCAAATTTTTCCATGGATTCATTGTCCTTGCCCGAGACGAAACCGCCTACCAGGAACATGCTATTTATTATTATTTATTTTTTTTTTATGGAAATTTGACTTGGTGAAATGATTTTGGAAATACTTAGGAAGCGTTTACTTTTATGAAACTAATAACAAATATATGGATTTTTTTTTAGANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATGGCGTTGGCCTTGGTGAGTAGAAATCATGATTAAGGTGAACAATTGATTTTAGTCAATAGTACATGGCTTCTTACTTTTTATTTTTGCTATTAGTTTTTTAGCTCCAGTTTTTGTGCTATTTTACGGAAGTTGTGTTAGATCTGCAGTTACTTTTATTCTGTTTCAATTGGGTTTCATTAGGTTTTGAGTTGTGGATGTACGAAGCTTATTGTTGCGTAATGTTTTGACTTTTTTATTTTTTATTTGGAGTAGATTTTCATCCCTCCCTTTCGCTTTTTCATGAGGAGAAATCAGCCTTTCTATATTCATATGTAAGTAGACTCTAAGACGAGCAATGGCACTTGGAATCTTGCAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGACTACTTGCTTAACCCCAAGAAGGTAACTCCCGTCTATTTCTCAACACTTGTGGCCTTTTGTAGTATTTGATTTGAAGCTAGTTTATTTCCCTGTGTTGTCATCCAGATGTTCTAATTGTTGATTCATTGATATTACTGTGAATTCACCTAAATAGGCTTGCCGTGTTCCTTACTAGCCTTTTTCTTCATAATGCCTCTTCAACTGATCCCCAAGTGCTGAAATGTTTTTTGCAACTTTGATCAACATGTTCGTCTTTTTCCATCTTACAAGTAGCCTGAACTATAAAAATATGTACATTCCTTTTCTACAATAATAGCCAAAAGTTTTGAAGAATGGTCAACCACCATTTGCGTCACAAATCTCCCTTCACTTGGAGTTTCAATCATAATTTAAGCAAAAATAAAACATACAAAAATTGCCTCTTATATCTGAATATGCTTCAGACAAGCACGTTAATAGTTTCTTGAAACATGATTGATTTCCACAATTTCCCTCGATTCCTTTACAAGTCTCCTTTGGGAAAATCACTTGCCCTTAAATCTATCTTTTGTGACATGATTAACTTTTTTGGCATCGATGCTATTAGGAACACTCTGGTCCCAATGTATCGTTGTGGTAAATCCATTTAGGCATTAGTTATGTGTCTTCCCTTGCTCTCTTCGCTTCTTTTTGCAGCTTAACAAAGTTCATCCTGAACCCTTGCTTAGGGCTTCCTCTCAATGGAAATCTTCATTTGCCCTCAAGTTTCAATACATAATTAACAAAGGAAGTTTGGAAAATCCCAGTCTATTCTTCTCAGTTTGGCTATAAAATGAAAAATTCAAAACTTCCAAAGCAAGTGAAATTCTCTATGGGAACTTTTGAGTTGAAGTGTTAACATTCACTCAAATCCCTTGATAATGTCCCTTATGATCTCACTGTGTCTATGAACACCCTCATTTTCAGCACTTAAAACCGTTCTCTTTATTCCTTGATGGTCATCTTTCTAATAGTGATGGCTTAATGGCCACAATGTTTGATGGTTTATTTTTTGCCTATTTGTTGGCTTGATAGGAAAGGAACCAGTCTTTTGGTTATGGCGAATAGAATCCCATGTTATACTCGATGTTTTATCATTGAACCATGTTTTAGGTTATAATTCTTAAGTTTGGATATGTTAAAGCTTGTGCTGGGAGTTTATTTTAAGAAACAGGGGTCAGTATACTGTTTGAATTGTGCTTATAAATGGGGTTTAGTTTGTGTGACCTATGTTCATCCTTTTTGTTTTTGGTTTGGGATTTATAAGAAATTTAAATAATTTACATGTTTACCATTTTTTGTATAGAAAATTCATTTCTACATTAAATTTGGTAAAAATATCATAATATTTTTCTTTTGTAATCAGCCAGTACAGTAAGTAGTTTACTACCGTTGTCAACCGTGTAATCTTTTTGAATAATTATTTTGTAATGTGAATATTCAACTACTTTTGTAATTGCTTCTCAAATATTCACCAAGGTGCGATGAAGTGTGCATAAATTCTTTCGAACAGGCCAAGCTTTCTGAACCATTGTTATCTTTGTAGTTCTTTCTTGATGTTAATTTTGTGTTTCATCCCTTATGAAATTGTCTTACCTTTCTGGAAAAACTTTTGGGAACATCACCATTTTTCAAACTTCAGGAAGGAAACCTCCAAATTTGCCCATCCAACTAATTTACAAACCCTCCAATCATCTTCTTTTTTGAAAATGCATCCTCTTTGTGTGGAATCTGCATTAACTCTAGCGCTTATGATTGCTATGGTTTATAGAGGAATGTGAAGGTAATTGTAAATTTGGAGGAATGAAAAGAATACTGAGCTTGGTTTATGAATTTTGTTTGTCCTTCTTTGATCATTCAATGATCACTTGTGTCTCTTTCAAAGTTTTAGGAGATGGTAAATATTCTAACAAATAGTTGGGGGATGTGTGTATTCATTGTACAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAATTGCATAATATATGGTTGATGCTTCTTCCAATCTACAATTTTTTGCTATCAGTTTTCCCCATCATCGTTAAAATAAGAACATTGAGAGGAGAGGAACCTTAGATGAAAAGTTGGAGGTGGTCACACACACACACACACTTTTTTTTTTCTTTTTCATTAAAAAATTCTTACTTCCCTTCCTCGCTACACTCATTTGCAGAGTTCACCCCATTTGTAGCTTACATTATTGTTATGTGAACATAACTGCTACAATTTTTTTGGCCAACCCGGTTCTGCCAACTTATTTTCTCATAATAAATGTCACACTTGTTAGAGACTACCTATTTTCAATGCATTATATTACGATGAACTTCAACATTTCTGGGTTTTATTTATTTATTTATTTATTCTTCAATTAAGAACGAAATAAACAAAAGTATCTGATT

mRNA sequence

TTTAGAGAACTGGAAGAAGACAATTAAGGCCCTATGCGGTGCGTTGGTATAAAAGGATGCAGCGTATGGAGACCACGAGAAACATTGCGAGCCCTAGCCCTCAGATCTGAACAACATCTCATTCCAACGCCATGGCCAGCTTTGACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATTTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAGGGTGCTGGTCACAAGCAAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGACTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAATTGCATAATATATGGTTGATGCTTCTTCCAATCTACAATTTTTTGCTATCAGTTTTCCCCATCATCGTTAAAATAAGAACATTGAGAGGAGAGGAACCTTAGATGAAAAGTTGGAGGTGGTCACACACACACACACACTTTTTTTTTTCTTTTTCATTAAAAAATTCTTACTTCCCTTCCTCGCTACACTCATTTGCAGAGTTCACCCCATTTGTAGCTTACATTATTGTTATGTGAACATAACTGCTACAATTTTTTTGGCCAACCCGGTTCTGCCAACTTATTTTCTCATAATAAATGTCACACTTGTTAGAGACTACCTATTTTCAATGCATTATATTACGATGAACTTCAACATTTCTGGGTTTTATTTATTTATTTATTTATTCTTCAATTAAGAACGAAATAAACAAAAGTATCTGATT

Coding sequence (CDS)

ATGGCCAGCTTTGACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATTTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAGGGTGCTGGTCACAAGCAAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGACTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAA

Protein sequence

MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA

Homology

[Close]

BLAST of Cp4.1LG00g01220 vs. Swiss-Prot
Match: CYC_VIGRR (Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-59
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS AN
Sbjct: 1   ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

[Close]

BLAST of Cp4.1LG00g01220 vs. Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-59
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KN AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  KNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Cp4.1LG00g01220 vs. Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 3.9e-59
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  KNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Cp4.1LG00g01220 vs. Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 3.9e-59
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  KNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Cp4.1LG00g01220 vs. Swiss-Prot
Match: CYC2_ARATH (Cytochrome c-2 OS=Arabidopsis thaliana GN=CYTC-2 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-57
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGN KAGEKIF+TKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NK+MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. TrEMBL
Match: A0A0S3RSC9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G064500 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-58
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS A
Sbjct: 1   MASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. TrEMBL
Match: A0A0L9U2E1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g036400 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-58
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS A
Sbjct: 1   MASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. TrEMBL
Match: A0A078FH37_BRANA (BnaA07g10260D protein OS=Brassica napus GN=BnaC07g13460D PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-57
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  NKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. TrEMBL
Match: A0A0A0KPD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G244150 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-57
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSK GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNSKTGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEAT 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+T
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111

[Close]

BLAST of Cp4.1LG00g01220 vs. TrEMBL
Match: M4D786_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-57
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  NKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. TAIR10
Match: AT4G10040.1 (AT4G10040.1 cytochrome c-2)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-58
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGN KAGEKIF+TKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NK+MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. TAIR10
Match: AT1G22840.1 (AT1G22840.1 CYTOCHROME C-1)

HSP 1 Score: 221.1 bits (562), Expect = 3.5e-58
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGN+KAGEKIF+TKCAQCHTV+ GAGHKQGPNLNGLFGRQSGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKN AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. NCBI nr
Match: gi|950955084|ref|XP_014496567.1| (PREDICTED: cytochrome c [Vigna radiata var. radiata])

HSP 1 Score: 231.5 bits (589), Expect = 7.3e-58
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS A
Sbjct: 1   MASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. NCBI nr
Match: gi|118013|sp|P00052.1|CYC_VIGRR (RecName: Full=Cytochrome c)

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS AN
Sbjct: 1   ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

[Close]

BLAST of Cp4.1LG00g01220 vs. NCBI nr
Match: gi|729296184|ref|XP_010542745.1| (PREDICTED: cytochrome c [Tarenaya hassleriana])

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKNMAV+WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKEATA
Sbjct: 61  NKNMAVMWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 112

[Close]

BLAST of Cp4.1LG00g01220 vs. NCBI nr
Match: gi|449457373|ref|XP_004146423.1| (PREDICTED: cytochrome c [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 3.6e-57
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSK GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNSKTGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEAT 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+T
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111

[Close]

BLAST of Cp4.1LG00g01220 vs. NCBI nr
Match: gi|117976|sp|P00051.1|CYC_CUCMA (RecName: Full=Cytochrome c)

HSP 1 Score: 229.2 bits (583), Expect = 3.6e-57
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KN AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  KNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g01220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYC_VIGRR	1.7e-59	97.30	Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1	[more]
CYC_CUCMA	2.3e-59	98.20	Cytochrome c OS=Cucurbita maxima PE=1 SV=1	[more]
CYC_BRANA	3.9e-59	98.20	Cytochrome c OS=Brassica napus PE=1 SV=1	[more]
CYC_BRAOL	3.9e-59	98.20	Cytochrome c OS=Brassica oleracea PE=1 SV=1	[more]
CYC2_ARATH	2.1e-57	93.75	Cytochrome c-2 OS=Arabidopsis thaliana GN=CYTC-2 PE=1 SV=1	[more]

BLAST of Cp4.1LG00g01220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3RSC9_PHAAN	5.1e-58	97.32	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G064500 PE=...	[more]
A0A0L9U2E1_PHAAN	5.1e-58	97.32	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g036400 PE=3 SV=1	[more]
A0A078FH37_BRANA	2.5e-57	97.32	BnaA07g10260D protein OS=Brassica napus GN=BnaC07g13460D PE=3 SV=1	[more]
A0A0A0KPD8_CUCSA	2.5e-57	97.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G244150 PE=3 SV=1	[more]
M4D786_BRARP	2.5e-57	97.32	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1	[more]

BLAST of Cp4.1LG00g01220 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10040.1	1.2e-58	93.75	cytochrome c-2	[more]
AT1G22840.1	3.5e-58	92.86	CYTOCHROME C-1	[more]

BLAST of Cp4.1LG00g01220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|950955084\|ref\|XP_014496567.1\|	7.3e-58	97.32	PREDICTED: cytochrome c [Vigna radiata var. radiata]	[more]
gi\|118013\|sp\|P00052.1\|CYC_VIGRR	2.8e-57	97.30	RecName: Full=Cytochrome c	[more]
gi\|729296184\|ref\|XP_010542745.1\|	2.8e-57	96.43	PREDICTED: cytochrome c [Tarenaya hassleriana]	[more]
gi\|449457373\|ref\|XP_004146423.1\|	3.6e-57	97.30	PREDICTED: cytochrome c [Cucumis sativus]	[more]
gi\|117976\|sp\|P00051.1\|CYC_CUCMA	3.6e-57	98.20	RecName: Full=Cytochrome c	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0020037	heme binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009056	Cyt_c-like_dom
IPR002327	Cyt_c_1A/1B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005758	mitochondrial intermembrane space
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g01220.1	Cp4.1LG00g01220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002327	Cytochrome c, class IA/ IB	PRINTS	PR00604	CYTCHRMECIAB	coord: 101..109 score: 2.4E-36coord: 84..94 score: 2.4E-36coord: 22..29 score: 2.4E-36coord: 65..81 score: 2.4E-36coord: 35..50 score: 2.4E-36coord: 51..61 score: 2.4
IPR002327	Cytochrome c, class IA/ IB	PANTHER	PTHR11961	CYTOCHROME C	coord: 1..112 score: 6.8
IPR009056	Cytochrome c-like domain	GENE3D	G3DSA:1.10.760.10		coord: 9..111 score: 6.4
IPR009056	Cytochrome c-like domain	PFAM	PF00034	Cytochrom_C	coord: 13..109 score: 1.7
IPR009056	Cytochrome c-like domain	PROFILE	PS51007	CYTC	coord: 10..111 score: 16
IPR009056	Cytochrome c-like domain	unknown	SSF46626	Cytochrome c	coord: 9..109 score: 1.76
None	No IPR available	PANTHER	PTHR11961:SF8	SUBFAMILY NOT NAMED	coord: 1..112 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g01220	CmaCh06G008830	Cucurbita maxima (Rimu)	cmacpeB805
Cp4.1LG00g01220	CmoCh06G009170	Cucurbita moschata (Rifu)	cmocpeB758
Cp4.1LG00g01220	Carg26075	Silver-seed gourd	carcpeB0442

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None