CmoCh20G010850 (gene) Cucurbita moschata (Rifu)

NameCmoCh20G010850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZonadhesin
LocationCmo_Chr20 : 10275597 .. 10278402 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACAAATTCATTCCTTATAAAATCCTAAATTCTCTCGCAAATTTCTCTCCATCTCTCTTTCTGAACTTTTTCTTCTTCTTCCTTGGAGAGAAAATAGGTGATCCAATCAAGCCGAGGAGAAATGGGAGCTTGTGCGACTAAGCCGAAGGTTGACGCCGGCAAGGCTCCGGCACCTGAGCCGGAGAACAAGGATGTTGATGCTGTAGTCGCTGTTCAACCGGAGAAGAACGTTGAGGTTCCGGTGGTGGAAGTTGCCGGAGAGGGAAACCAAAGCGATAAAGGCAAGGAAGTTGTTGTTGATGACGACGACAATAAGGCGGATGATCAGAGAGTTAAAACCCGCTCACTTAGCAACTTGTTTAAAGAGGTATTTCGCAATCTTCGTCTATTTTAGTTTCCTCGATTTTGTTTCGATTTTCTTCCGATTATCGATTGCTAATCGTTCTTTGAATGTCTATTGAGAATCTGATGCTGTTTTTGTTGAGTATAATTAAATATATTGTTTGAGAAATTCATCGTTGTTCTTTTTTTTCTCTGTTTATCGTTGAAATTCTTTCTCGCTATTTGTTGTTCGTTGAATGGATTGTGCTGGTTGATTTTGAAATTAGGGGACTCTGCGGCTGTTTGGTTCTTGAGAAAGAAATGGGAGAAAAAGTATAAGAAAATGAAGAATATGCTATTGATACCTGGAGTTTCTCTGTTTCTGAATTGAATATTTTATAGCCTTTTCATTTTTTCATTCGGAGCCTCTGGAGTTTATTCGCGAATCACGGCGGTTTATCGGGAACCAAACAGATTTGTTTACTCTTTTCCAGAAAAAAAACCTTTATCCTCTTTTGGACGTAAAGCGAACTGAACAGTCGTCCCAAAGGTAAAAAGCGATGTAAATAATTGCAATTATACTTTCCAAAATGGCCCACTTCTTCGTAATTTATGACTTGTCGGCATCCTAGAATTTAGAGATTCAAACTTTCAAGGAAAAATTTCACCTCATTTCCAATGGTTTCCTTTTCGATTCAAGAACTCTGTTGGTTTGATTGGACGTTCCGAGACTTCGATAATTTAGGTTCGAATCTTTTGCACTAAAGAATCAATACATAGAATCTTCCATAATCCACAACACATTCGTTTGGTGACAAACAAAAGTGTCTTTCCTTGAGGGGCCCCCCTTTTTCCTCATCTTTCTTCTATGGCTGTTTCATGGCTCATTGAACCTTACCTGTTTGGCTGCACCTTATAGAGGTTTCTTTCCTTCCCATGTGATCTTGATGGGAAAAGGGTTGATGCATTTTTCACCCGCACGTTCGGATACGGCATGTCCCCAGGGCCCTAGTTATGCATTCCTGCAACCAGAAAAACACAGTTGGATTCGAGTAAATATTGATCTGTAGGTTATGTTGATAGTTGGCCTTAGGATCAGCTGACCTTCCATGGGTCGTACTTTTATTGTCTCTGCTTGTAACGACCCTAAGCCCACCGCTAGAAGATATTGTCCTCTTTGGGCTTTTCTTTTCGAGCTTTCCCTCAAGGTTTTTAAAACGCGGATACCAAGGAGAGGTTTTCACACTCTTATAAAGAATACTCCGTTCTCCTCCCCAACCAATGTGGGATCTCACACCGCTCCTAATAGTTTGTTGTTTGTGCATTGCTTGGAAAATGACTGTTGATCAATATGATCTTGCATTGCCAACTGGTGGGTGCCCAAATTGATTTTGTATTATAAATGAGATGTGTGTTCGTAAATGGTTAGCTAGCTTAGCTGTAGCTGTGCTTTGAAGTTGTCGGTTTGAACTGCTTCAAAATATGGGACACAAAGTTTGGTTTGATCTACTCAGATCAATTTTGTTTTGAAAAATATGTTATGGCAGCTAAAACTTTCTTTGCTTATAGTCTAAATCTGAATATACTGCAGAAAGAAGGGAGTGAATCAAATGAATGTGAGAAGCCAGCAGGGGAAATAAAGGCACCTCAAACTGAACTAGAAACTGAAAAGTGTATAGAAGAGCCCCAAACAGAGGTGCCTCAAACGGTTGTCGAGACCGAAAAACATATCGACGAAGCGGAGACGAAGGTGCCTCAAACTGTAGTAGAGCCTGAAAAACATACAGATAAAGCCGAACCAAATGCGCCTGAAACCGAGTCAGAAAGGATACAGATCGCTGATGTTGTTCCCACAACTTCTGAGACCCTTCCTGAGGAGAAAGTAATCTTGCCTTCACCACCTGATGAAACTGAAGTAGTGACATTAGTTGAAGCAACACCAGCAGCAGATGAGACCAAAGCATCTGAGAAGAAAAAAGAAGATATCATTGATGTCGAGAAGACCGAGATGGAGACACCGAAAGAAACCGACTCGAAGCCCGCTGCTCCAACGGAAACCAGTACCGAGCCAGCACAACAAAACGATGAAGTAGTGAAGGTAATTGGTGAGGAGAAAATAACAAGCTGATGAAAAGTGAAGTATTGAAAGTATAAGAAGACGCCTTTGTTGTTGGCTGTTTAAATTTATGATGTGGGAGAAACTTTGCCCAAAGAAGACGTGGCTGCAATCTGCCATGATGATCAAGGTTAGATTGTTGTGTTTGGAGGCTTTGTTTCTATTGTTTTGTTGTATATCATTTGTTGGTTTTTCGTTGAGTTGCTCATCCTCTTTCCTTTGCTTTGCATGTAGACATACGAGTTTGTAAGATTAATATGAACATAGAATGCCCTCTTTTAAATGTGAAATTTACAATTCTTCATGATTTTGACTCTGAAATTTGCCTCAACTTTATGCTCATTTCTGTCTTTGAAACTATTTCTAAA

mRNA sequence

GAACAAATTCATTCCTTATAAAATCCTAAATTCTCTCGCAAATTTCTCTCCATCTCTCTTTCTGAACTTTTTCTTCTTCTTCCTTGGAGAGAAAATAGGTGATCCAATCAAGCCGAGGAGAAATGGGAGCTTGTGCGACTAAGCCGAAGGTTGACGCCGGCAAGGCTCCGGCACCTGAGCCGGAGAACAAGGATGTTGATGCTGTAGTCGCTGTTCAACCGGAGAAGAACGTTGAGGTTCCGGTGGTGGAAGTTGCCGGAGAGGGAAACCAAAGCGATAAAGGCAAGGAAGTTGTTGTTGATGACGACGACAATAAGGCGGATGATCAGAGAGTTAAAACCCGCTCACTTAGCAACTTGTTTAAAGAGAAAGAAGGGAGTGAATCAAATGAATGTGAGAAGCCAGCAGGGGAAATAAAGGCACCTCAAACTGAACTAGAAACTGAAAAGTGTATAGAAGAGCCCCAAACAGAGGTGCCTCAAACGGTTGTCGAGACCGAAAAACATATCGACGAAGCGGAGACGAAGGTGCCTCAAACTGTAGTAGAGCCTGAAAAACATACAGATAAAGCCGAACCAAATGCGCCTGAAACCGAGTCAGAAAGGATACAGATCGCTGATGTTGTTCCCACAACTTCTGAGACCCTTCCTGAGGAGAAAGTAATCTTGCCTTCACCACCTGATGAAACTGAAGTAGTGACATTAGTTGAAGCAACACCAGCAGCAGATGAGACCAAAGCATCTGAGAAGAAAAAAGAAGATATCATTGATGTCGAGAAGACCGAGATGGAGACACCGAAAGAAACCGACTCGAAGCCCGCTGCTCCAACGGAAACCAGTACCGAGCCAGCACAACAAAACGATGAAGTAGTGAAGGTAATTGGTGAGGAGAAAATAACAAGCTGATGAAAAGTGAAGTATTGAAAGTATAAGAAGACGCCTTTGTTGTTGGCTGTTTAAATTTATGATGTGGGAGAAACTTTGCCCAAAGAAGACGTGGCTGCAATCTGCCATGATGATCAAGGTTAGATTGTTGTGTTTGGAGGCTTTGTTTCTATTGTTTTGTTGTATATCATTTGTTGGTTTTTCGTTGAGTTGCTCATCCTCTTTCCTTTGCTTTGCATGTAGACATACGAGTTTGTAAGATTAATATGAACATAGAATGCCCTCTTTTAAATGTGAAATTTACAATTCTTCATGATTTTGACTCTGAAATTTGCCTCAACTTTATGCTCATTTCTGTCTTTGAAACTATTTCTAAA

Coding sequence (CDS)

ATGGGAGCTTGTGCGACTAAGCCGAAGGTTGACGCCGGCAAGGCTCCGGCACCTGAGCCGGAGAACAAGGATGTTGATGCTGTAGTCGCTGTTCAACCGGAGAAGAACGTTGAGGTTCCGGTGGTGGAAGTTGCCGGAGAGGGAAACCAAAGCGATAAAGGCAAGGAAGTTGTTGTTGATGACGACGACAATAAGGCGGATGATCAGAGAGTTAAAACCCGCTCACTTAGCAACTTGTTTAAAGAGAAAGAAGGGAGTGAATCAAATGAATGTGAGAAGCCAGCAGGGGAAATAAAGGCACCTCAAACTGAACTAGAAACTGAAAAGTGTATAGAAGAGCCCCAAACAGAGGTGCCTCAAACGGTTGTCGAGACCGAAAAACATATCGACGAAGCGGAGACGAAGGTGCCTCAAACTGTAGTAGAGCCTGAAAAACATACAGATAAAGCCGAACCAAATGCGCCTGAAACCGAGTCAGAAAGGATACAGATCGCTGATGTTGTTCCCACAACTTCTGAGACCCTTCCTGAGGAGAAAGTAATCTTGCCTTCACCACCTGATGAAACTGAAGTAGTGACATTAGTTGAAGCAACACCAGCAGCAGATGAGACCAAAGCATCTGAGAAGAAAAAAGAAGATATCATTGATGTCGAGAAGACCGAGATGGAGACACCGAAAGAAACCGACTCGAAGCCCGCTGCTCCAACGGAAACCAGTACCGAGCCAGCACAACAAAACGATGAAGTAGTGAAGGTAATTGGTGAGGAGAAAATAACAAGCTGA
BLAST of CmoCh20G010850 vs. TrEMBL
Match: A0A0A0LQ67_CUCSA (Zonadhesin OS=Cucumis sativus GN=Csa_2G301490 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.9e-56
Identity = 176/340 (51.76%), Postives = 200/340 (58.82%), Query Frame = 1

Query: 1   MGACATKPKVDAGKAPAPEPENKDVDAVVAV----QPEKNVEVPVVEVAGEGNQSDKGKE 60
           MGACATKPK D   APAPEPE KDVDA VAV     P+K VEV  VEV+GEG+QSDKGKE
Sbjct: 1   MGACATKPKADGALAPAPEPEKKDVDAAVAVLDAVDPQKTVEVKAVEVSGEGDQSDKGKE 60

Query: 61  VVVDDDDNKADDQRVKTRSLSNLFKEKEGSESNECEKPAGE-----------IKAPQTEL 120
           VV D DD+K DDQ VK RSLSNLFKEKEGSES + EKP GE           IKAPQTE+
Sbjct: 61  VV-DVDDDKVDDQSVKRRSLSNLFKEKEGSESIDGEKPIGETETEIQTKEIDIKAPQTEV 120

Query: 121 ETEKCIEEPQTEVPQTVV------------------ETEKHIDEAETKVPQTVVEPEKHT 180
           ETEKCIEEP+ +VPQTVV                  ETEKH +E+ETK+PQTVVE EK T
Sbjct: 121 ETEKCIEEPEAKVPQTVVVKEKHIEEADIKVPQTIAETEKHTEESETKLPQTVVETEKQT 180

Query: 181 DKAEPNAP-------ETES----------------ERIQIADVVPTTSETLPEEKVILPS 240
           ++ E   P       ETE+                ERI++ DV  TTSET+  EKVI PS
Sbjct: 181 EEVEVEVPITVVETKETETKAPHPVVEIEKSEIPNERIKVTDVT-TTSETITVEKVIAPS 240

Query: 241 PPDETEVVTLVEATPAADETKASEK--KKEDIIDVEKT---------------------- 261
           P D T      E    ++E K  EK  K E +  VE T                      
Sbjct: 241 PSDVTPTSETSE-EKRSEEVKVPEKVEKAEVVTLVEATPAPDESITSEKKKDDSSDVKKT 300

BLAST of CmoCh20G010850 vs. TrEMBL
Match: A0A067KU05_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09483 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 94/277 (33.94%), Postives = 130/277 (46.93%), Query Frame = 1

Query: 1   MGACATKPKVDAGKAPAPEPEN-----KDVDAVVAVQP-------EKNVEVPVVEVAGEG 60
           MGACATKPKV    A APEPE+      D  A+    P       E+  E  V+E  G+ 
Sbjct: 1   MGACATKPKVLKDDAQAPEPESAPEPSSDQKALETAVPGDQPVVAEQEKEKKVIESEGD- 60

Query: 61  NQSDKGKEVVVDDDDNKADDQRVKTRSLSNLFKE-KEGSESNECEKPAGEIKAPQTELET 120
             +DK KE+V+DDDD + DDQ  K RSLS+LFKE +EG +S+E EK       P+   ET
Sbjct: 61  --NDKVKEIVLDDDD-RVDDQSSKRRSLSHLFKENEEGKKSSEDEKAPEGSLIPKESSET 120

Query: 121 EK-----CIEEPQTEVPQTVV-------ETEKHIDEAETKVPQTVVEPEKHTDKAEPNAP 180
           +K       EE  T  P   V       ETEK  +    +   T   PE+   +A     
Sbjct: 121 QKPKEIIVQEESLTSTPMEPVTLLVSLSETEKPKEPIVQEQSATSTSPEQEKFEASSETE 180

Query: 181 ETESERIQIADVVPTTS--ETLPEEKVILP--SPPDETEVVTLVEATPAADETKASEKKK 240
           + +   +Q   V  T++  ET   ++ ++P  S P E+  V    +T  + E    E+  
Sbjct: 181 KHKEPIVQELSVTSTSTEPETEKHKETVVPVISTPRESGTVLEPSSTQESVEPVKQERIG 240

Query: 241 EDIIDVEKTEMETPKETDSKPAAPTETSTEPAQQNDE 249
           E I + EK     PKE+  +    TE   EP +Q  E
Sbjct: 241 ETISETEK-----PKESLKQEPLSTEKLLEPEKQETE 268

BLAST of CmoCh20G010850 vs. NCBI nr
Match: gi|659121982|ref|XP_008460915.1| (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.7e-57
Identity = 176/325 (54.15%), Postives = 196/325 (60.31%), Query Frame = 1

Query: 1   MGACATKPKVDAGKAPAPEPENKDVDAVV-AVQPEKNVEVPVVEVAGEGNQSDKGKEVVV 60
           MGACATKPK D   APAPEPE KDVDAVV AV+PEK VEVP VEV+GEG+Q DKGKEVV 
Sbjct: 1   MGACATKPKADGALAPAPEPEKKDVDAVVDAVEPEKTVEVPAVEVSGEGDQGDKGKEVV- 60

Query: 61  DDDDNKADDQRVKTRSLSNLFKEKEGSESNECEKPAGE-----------IKAPQTE---- 120
           D DD+K DDQ VK RSLSNLFKEKEGSES + EKP GE           IKAPQTE    
Sbjct: 61  DVDDDKVDDQSVKRRSLSNLFKEKEGSESIDGEKPVGETETEIQTKEIDIKAPQTEKCIE 120

Query: 121 ----------LETEKCIEEPQTEVPQTVVETEKHIDEA-----------ETKVPQTVVEP 180
                     +E EK  EE +T+VPQTVVETEK  +EA           E +VP+TVVE 
Sbjct: 121 ESETKVPQTVVEAEKHTEEIETKVPQTVVETEKRTEEAVVQIEKQTEEAEVEVPKTVVET 180

Query: 181 EKHTDKAEPNAPETES-----ERIQIADVVPTTSETLPEEKVILPSPPDET--------- 240
           ++   KA     ETE      ERIQI DV  TTSET+  EKVI PSP D T         
Sbjct: 181 KETETKAPHPVVETEKSEIPIERIQITDVPTTTSETITVEKVIAPSPSDVTPTSETSEEK 240

Query: 241 --------------EVVTLVEATPAADETKASEKKKEDIIDVEKTEMETPKETDSKPAAP 261
                         EVVTLVE  P          KK+DI D +KTE ETPKET+ KP AP
Sbjct: 241 RSEDVKLPEKVEKAEVVTLVEVEP----------KKDDISDAKKTETETPKETEPKPVAP 300

BLAST of CmoCh20G010850 vs. NCBI nr
Match: gi|449459296|ref|XP_004147382.1| (PREDICTED: neurofilament medium polypeptide-like [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 7.1e-56
Identity = 176/340 (51.76%), Postives = 200/340 (58.82%), Query Frame = 1

Query: 1   MGACATKPKVDAGKAPAPEPENKDVDAVVAV----QPEKNVEVPVVEVAGEGNQSDKGKE 60
           MGACATKPK D   APAPEPE KDVDA VAV     P+K VEV  VEV+GEG+QSDKGKE
Sbjct: 1   MGACATKPKADGALAPAPEPEKKDVDAAVAVLDAVDPQKTVEVKAVEVSGEGDQSDKGKE 60

Query: 61  VVVDDDDNKADDQRVKTRSLSNLFKEKEGSESNECEKPAGE-----------IKAPQTEL 120
           VV D DD+K DDQ VK RSLSNLFKEKEGSES + EKP GE           IKAPQTE+
Sbjct: 61  VV-DVDDDKVDDQSVKRRSLSNLFKEKEGSESIDGEKPIGETETEIQTKEIDIKAPQTEV 120

Query: 121 ETEKCIEEPQTEVPQTVV------------------ETEKHIDEAETKVPQTVVEPEKHT 180
           ETEKCIEEP+ +VPQTVV                  ETEKH +E+ETK+PQTVVE EK T
Sbjct: 121 ETEKCIEEPEAKVPQTVVVKEKHIEEADIKVPQTIAETEKHTEESETKLPQTVVETEKQT 180

Query: 181 DKAEPNAP-------ETES----------------ERIQIADVVPTTSETLPEEKVILPS 240
           ++ E   P       ETE+                ERI++ DV  TTSET+  EKVI PS
Sbjct: 181 EEVEVEVPITVVETKETETKAPHPVVEIEKSEIPNERIKVTDVT-TTSETITVEKVIAPS 240

Query: 241 PPDETEVVTLVEATPAADETKASEK--KKEDIIDVEKT---------------------- 261
           P D T      E    ++E K  EK  K E +  VE T                      
Sbjct: 241 PSDVTPTSETSE-EKRSEEVKVPEKVEKAEVVTLVEATPAPDESITSEKKKDDSSDVKKT 300

BLAST of CmoCh20G010850 vs. NCBI nr
Match: gi|802615811|ref|XP_012075313.1| (PREDICTED: variable charge X-linked protein 3B [Jatropha curcas])

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 94/277 (33.94%), Postives = 130/277 (46.93%), Query Frame = 1

Query: 1   MGACATKPKVDAGKAPAPEPEN-----KDVDAVVAVQP-------EKNVEVPVVEVAGEG 60
           MGACATKPKV    A APEPE+      D  A+    P       E+  E  V+E  G+ 
Sbjct: 1   MGACATKPKVLKDDAQAPEPESAPEPSSDQKALETAVPGDQPVVAEQEKEKKVIESEGD- 60

Query: 61  NQSDKGKEVVVDDDDNKADDQRVKTRSLSNLFKE-KEGSESNECEKPAGEIKAPQTELET 120
             +DK KE+V+DDDD + DDQ  K RSLS+LFKE +EG +S+E EK       P+   ET
Sbjct: 61  --NDKVKEIVLDDDD-RVDDQSSKRRSLSHLFKENEEGKKSSEDEKAPEGSLIPKESSET 120

Query: 121 EK-----CIEEPQTEVPQTVV-------ETEKHIDEAETKVPQTVVEPEKHTDKAEPNAP 180
           +K       EE  T  P   V       ETEK  +    +   T   PE+   +A     
Sbjct: 121 QKPKEIIVQEESLTSTPMEPVTLLVSLSETEKPKEPIVQEQSATSTSPEQEKFEASSETE 180

Query: 181 ETESERIQIADVVPTTS--ETLPEEKVILP--SPPDETEVVTLVEATPAADETKASEKKK 240
           + +   +Q   V  T++  ET   ++ ++P  S P E+  V    +T  + E    E+  
Sbjct: 181 KHKEPIVQELSVTSTSTEPETEKHKETVVPVISTPRESGTVLEPSSTQESVEPVKQERIG 240

Query: 241 EDIIDVEKTEMETPKETDSKPAAPTETSTEPAQQNDE 249
           E I + EK     PKE+  +    TE   EP +Q  E
Sbjct: 241 ETISETEK-----PKESLKQEPLSTEKLLEPEKQETE 268

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ67_CUCSA4.9e-5651.76Zonadhesin OS=Cucumis sativus GN=Csa_2G301490 PE=4 SV=1[more]
A0A067KU05_JATCU2.1e-0633.94Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659121982|ref|XP_008460915.1|1.7e-5754.15PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
gi|449459296|ref|XP_004147382.1|7.1e-5651.76PREDICTED: neurofilament medium polypeptide-like [Cucumis sativus][more]
gi|802615811|ref|XP_012075313.1|3.0e-0633.94PREDICTED: variable charge X-linked protein 3B [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G010850.1CmoCh20G010850.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G010850CmoCh02G005900Cucurbita moschata (Rifu)cmocmoB407
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G010850Melon (DHL92) v3.5.1cmomeB492
CmoCh20G010850Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G010850Cucurbita pepo (Zucchini)cmocpeB530
CmoCh20G010850Cucumber (Gy14) v2cgybcmoB214
CmoCh20G010850Cucumber (Chinese Long) v3cmocucB0642