Cla97C02G027010 (gene) Watermelon (97103) v2

NameCla97C02G027010
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionneurofilament medium polypeptide-like
LocationCla97Chr02 : 706709 .. 709469 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTTGTGCGACTAAGCCGAAGGCCGACGGCAGCTTGGCTCCGGCACCGGAACCGGAGAAGAGGGATGTTGATGCTCCAGTCGCTGTTGAACCTGAGAACAAAGTTGACGTTCCGGCGGTGGAAGAAGTTGCCGGAGAGGGAAACCAAAGCGATAGAGGCAAGGAAGTTGTTGATGTTGACGACGATAAGGTGGATGATCAGAGTGTAAAACGCCGCTCACTTAGCAACTTATTTAAGGAGGTATTGCTTAATCATCGTCTATTTTCCTTTTTTCCTTCTTTGATTTGGTTTCTATTTTCTTCCGATTGTCGATTGCTCATCAGTCTTGAGTTTCTTTTGAGAATCTGATGGTGTTTCGTTAAGTACAAATCAATATATTGTTTGAGGAATTCATATTCATCGTTCTTCTTTTTAAAAATTTATGAAGTCTTAGGTTTTTTCTTTCTCGCTATTCGTTGTTCGTTGAATGAAGTGGAGGATTGTGATGGTTGATTTTGAAATTAGGGGATTCTGTCGCTGTTTGGTTCTCGAGAAATAATTAGGGAAAAAAGTTAAAGAAAATGAAGAATTATGTTATTGATACCTCGTGTTTCTGAATTAGAATAAATTTCAATGAACTATTGTCGTTTTGTGATAGCTTTTTCATATTTTCTTTCGGAACCTCCACGTTTATTCGCGAATCTCGGCGGTTTCTCGGGAACCAAACAGATTTGTTTACTCTTTTCCAGAAGGGAACTTTTATCCTCTTTTGGACGTAAAGGGAACTGAACCGTCCTCCCAAAGGTGAAAAAGCGATGTAAAGAAATGCAATTATTTGTTCCAAAATGGCACAGTTCTTCATAATTTATGACTTGTCGGCATCCTAAAATTTAGAGATTCAAACTTTCAAGAAAAATTTTCATCTTCTTTTCAATGGTCCCTTTTTCGATTCAAGAACTCTGTTTGATTGATTGGACGTTTGGATATATAATATATAGCATTCAGGACTCAGGAGGCTTGATAATTTATTTAAGTCCGAATCTTTTGCACTTAAGAATCAATACATGGAATCTTCACATTCCACAACACCATTCGTTTGGTGACAAACAAAAGTGTCCTTCCTTGAGGGGCCACCCTTTTCTTCTCCTCTTTCTTCTGTTATTTCTGGTCATGTGTTGCCTCCATTCCGTGATTGTTTCCCGCCTCATTCAACTTTACATGTTTGGCTGCACCCTATAGAAGTTTCTTTCGTTCCCATGTGATCTTGATGGGAAAAGCCTTGATACATTTTTCACCCGCACGTTCGGACATGACATGTCCTCTGGGCCCTAGTTGTTACACGGTCCTTCAACCGGTAAAACGCCGTTGGTTTCGTGTAAGATATTGATTTGTAGGTTATGTTGATAGTTGACCTTAGGATCAGGGTCATTAATTAACGCTCCATGGGCCTTGCTTTTATTGGCTCCACTCCTCTGCAGGTATTTAGAATGTTGAGATGCTTTGAATTTGTTATCCCACGTCCGAAGGAAATAGGAAAGCTACGAGTTCCTATATCCAAAAGGAATTTGGTTATTCTCTCTTTTTACTAGTTGTTTGTTGAATGTGCATTGCTTGAAAAATGACTTTTCATCAATATGATCTTGCATTGCCAATTGATGGGTGCCCAAATTGATTATGTATATAAATGAGATGTGTGTATTCATAAATAGTTAGCTAGCTTAGCTGTAGCTGTGCTTTGAAGTTGTCGGTTCGAACTGCTTCCAAATTTGGGACACAAAGTTTGGTTTGATCTACTCAGATCAATTTTGGAAAAATTGAAAATATCATATGACAGCTGAAAGTGTTTCTGCATATATTCTAAATCCTCATTCAATGTCTTCTTAAATTATTGTTCTAAATGTAAAATGTGAATCTTCTGCAGAAAGAAGGGAGTGAATCAATTGAATTTGAGAAGCCAGCAGGGGAAACAGAGACACTGGAGGCTAAAGAGACAGAAATACATACAAAAGAAGTCGAGATAAAGGCACCTCAAACTGAAGTAGAAACCGAAAAGTGTACCGAGGAGGAGGCCGAGACAAAGGTGCCTCAAACTGTAGTAGTAACTGAGGAAGTTGACACTAAGGCCCCTCAAACTGTAGTAGAGACCGAAAAACATACTGAAGAAGCTGAGAAGAAGGGGCCTGAAACTGCAGTAGAAACTAAAAAACATATCGAAGAAGCTGAGACGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGAGGCGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGAGGCGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGATACGAAGGCACCTCAAACTGTAATGGAGCCTGAAAAATCTGAAATTCCAATTGAAAGGATACAGATCACCGATGTTCCGACAACTTCTGAGAGCATTGTTGTGGAGAAAGTAATTACGCCAACGAGTGAAACATTAGAAGATGTAAAATTGGCCGAGAAAGTCGAGAAAACTGAAGTAGTGACAGTAGTTGAAGCAACACCAGCAACAGATGAGAGTAACACGTCTGAGAAGAAGAAAGAAGAAGATATCAGTGATGTCAAGAAGACCGAGACGGAGACAGCGAAAGATACCGAACCGAAGGCCATTGCTCCAACCGAAAGCATTACCAAACCAGCAAAGGGGAACGATGAAGCAGCGAAGGTAACTGCTGAGGAAAAAACAACAAGTTGA

mRNA sequence

ATGGGAGCTTGTGCGACTAAGCCGAAGGCCGACGGCAGCTTGGCTCCGGCACCGGAACCGGAGAAGAGGGATGTTGATGCTCCAGTCGCTGTTGAACCTGAGAACAAAGTTGACGTTCCGGCGGTGGAAGAAGTTGCCGGAGAGGGAAACCAAAGCGATAGAGGCAAGGAAGTTGTTGATGTTGACGACGATAAGGTGGATGATCAGAGTGTAAAACGCCGCTCACTTAGCAACTTATTTAAGGAGAAAGAAGGGAGTGAATCAATTGAATTTGAGAAGCCAGCAGGGGAAACAGAGACACTGGAGGCTAAAGAGACAGAAATACATACAAAAGAAGTCGAGATAAAGGCACCTCAAACTGAAGTAGAAACCGAAAAGTGTACCGAGGAGGAGGCCGAGACAAAGGTGCCTCAAACTGTAGTAGTAACTGAGGAAGTTGACACTAAGGCCCCTCAAACTGTAGTAGAGACCGAAAAACATACTGAAGAAGCTGAGAAGAAGGGGCCTGAAACTGCAGTAGAAACTAAAAAACATATCGAAGAAGCTGAGACGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGAGGCGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGAGGCGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGATACGAAGGCACCTCAAACTGTAATGGAGCCTGAAAAATCTGAAATTCCAATTGAAAGGATACAGATCACCGATGTTCCGACAACTTCTGAGAGCATTGTTGTGGAGAAAGTAATTACGCCAACGAGTGAAACATTAGAAGATGTAAAATTGGCCGAGAAAGTCGAGAAAACTGAAGTAGTGACAGTAGTTGAAGCAACACCAGCAACAGATGAGAGTAACACGTCTGAGAAGAAGAAAGAAGAAGATATCAGTGATGTCAAGAAGACCGAGACGGAGACAGCGAAAGATACCGAACCGAAGGCCATTGCTCCAACCGAAAGCATTACCAAACCAGCAAAGGGGAACGATGAAGCAGCGAAGGTAACTGCTGAGGAAAAAACAACAAGTTGA

Coding sequence (CDS)

ATGGGAGCTTGTGCGACTAAGCCGAAGGCCGACGGCAGCTTGGCTCCGGCACCGGAACCGGAGAAGAGGGATGTTGATGCTCCAGTCGCTGTTGAACCTGAGAACAAAGTTGACGTTCCGGCGGTGGAAGAAGTTGCCGGAGAGGGAAACCAAAGCGATAGAGGCAAGGAAGTTGTTGATGTTGACGACGATAAGGTGGATGATCAGAGTGTAAAACGCCGCTCACTTAGCAACTTATTTAAGGAGAAAGAAGGGAGTGAATCAATTGAATTTGAGAAGCCAGCAGGGGAAACAGAGACACTGGAGGCTAAAGAGACAGAAATACATACAAAAGAAGTCGAGATAAAGGCACCTCAAACTGAAGTAGAAACCGAAAAGTGTACCGAGGAGGAGGCCGAGACAAAGGTGCCTCAAACTGTAGTAGTAACTGAGGAAGTTGACACTAAGGCCCCTCAAACTGTAGTAGAGACCGAAAAACATACTGAAGAAGCTGAGAAGAAGGGGCCTGAAACTGCAGTAGAAACTAAAAAACATATCGAAGAAGCTGAGACGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGAGGCGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGAGGCGAAGGCACCTCAAACTGTAGTAGAGACCGAAAAACACGTCGAAGAAGCTGATACGAAGGCACCTCAAACTGTAATGGAGCCTGAAAAATCTGAAATTCCAATTGAAAGGATACAGATCACCGATGTTCCGACAACTTCTGAGAGCATTGTTGTGGAGAAAGTAATTACGCCAACGAGTGAAACATTAGAAGATGTAAAATTGGCCGAGAAAGTCGAGAAAACTGAAGTAGTGACAGTAGTTGAAGCAACACCAGCAACAGATGAGAGTAACACGTCTGAGAAGAAGAAAGAAGAAGATATCAGTGATGTCAAGAAGACCGAGACGGAGACAGCGAAAGATACCGAACCGAAGGCCATTGCTCCAACCGAAAGCATTACCAAACCAGCAAAGGGGAACGATGAAGCAGCGAAGGTAACTGCTGAGGAAAAAACAACAAGTTGA

Protein sequence

MGACATKPKADGSLAPAPEPEKRDVDAPVAVEPENKVDVPAVEEVAGEGNQSDRGKEVVDVDDDKVDDQSVKRRSLSNLFKEKEGSESIEFEKPAGETETLEAKETEIHTKEVEIKAPQTEVETEKCTEEEAETKVPQTVVVTEEVDTKAPQTVVETEKHTEEAEKKGPETAVETKKHIEEAETKAPQTVVETEKHVEEAEAKAPQTVVETEKHVEEAEAKAPQTVVETEKHVEEADTKAPQTVMEPEKSEIPIERIQITDVPTTSESIVVEKVITPTSETLEDVKLAEKVEKTEVVTVVEATPATDESNTSEKKKEEDISDVKKTETETAKDTEPKAIAPTESITKPAKGNDEAAKVTAEEKTTS
BLAST of Cla97C02G027010 vs. NCBI nr
Match: XP_022947032.1 (uncharacterized protein LOC111451030 isoform X2 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 69/112 (61.61%), Postives = 75/112 (66.96%), Query Frame = 0

Query: 1   MGACATKPKADGSLAPAPEPEKRDVDAPVAVEPENKVDVPAVEEVAGEGNQSDRGKEVVD 60
           MGACATKPK D   APAP PEK   +  V V+    V+     E   E NQSD+GKEVVD
Sbjct: 1   MGACATKPKVDSGKAPAPVPEKNVEEKDVFVDTVASVEA----EKTFEENQSDKGKEVVD 60

Query: 61  VDDDKVDDQSVKRRSLSNLFKEKEGSESIEFEKPAGETETLEAKETEIHTKE 113
            DDDKVDDQSVKRRSLS LFKEKEG   +  E PAGETE LE+ ETE   KE
Sbjct: 61  -DDDKVDDQSVKRRSLSRLFKEKEGVNQL-CEGPAGETEKLESIETEKDGKE 106

BLAST of Cla97C02G027010 vs. NCBI nr
Match: XP_022947031.1 (uncharacterized protein LOC111451030 isoform X1 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 69/112 (61.61%), Postives = 75/112 (66.96%), Query Frame = 0

Query: 1   MGACATKPKADGSLAPAPEPEKRDVDAPVAVEPENKVDVPAVEEVAGEGNQSDRGKEVVD 60
           MGACATKPK D   APAP PEK   +  V V+    V+     E   E NQSD+GKEVVD
Sbjct: 1   MGACATKPKVDSGKAPAPVPEKNVEEKDVFVDTVASVEA----EKTFEENQSDKGKEVVD 60

Query: 61  VDDDKVDDQSVKRRSLSNLFKEKEGSESIEFEKPAGETETLEAKETEIHTKE 113
            DDDKVDDQSVKRRSLS LFKEKEG   +  E PAGETE LE+ ETE   KE
Sbjct: 61  -DDDKVDDQSVKRRSLSRLFKEKEGVNQL-CEGPAGETEKLESIETEKDGKE 106

BLAST of Cla97C02G027010 vs. NCBI nr
Match: XP_023007406.1 (serine-aspartate repeat-containing protein I-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-17
Identity = 68/112 (60.71%), Postives = 74/112 (66.07%), Query Frame = 0

Query: 1   MGACATKPKADGSLAPAPEPEKRDVDAPVAVEPENKVDVPAVEEVAGEGNQSDRGKEVVD 60
           MGACATKPK D    PAP PEK   +  V V+       P   E   E NQSD+GKEV  
Sbjct: 1   MGACATKPKVDSGKVPAPVPEKNVEEKDVFVD----TVAPVEAEKIFEENQSDKGKEV-- 60

Query: 61  VDDDKVDDQSVKRRSLSNLFKEKEGSESIEFEKPAGETETLEAKETEIHTKE 113
           VDDDKVDDQSVKRRSLS+LFKEKEG   +  E PAGETE LE+KETE   KE
Sbjct: 61  VDDDKVDDQSVKRRSLSHLFKEKEGVNQL-CEGPAGETEKLESKETEKDGKE 105

BLAST of Cla97C02G027010 vs. NCBI nr
Match: XP_023007405.1 (serine-aspartate repeat-containing protein I-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-17
Identity = 68/112 (60.71%), Postives = 74/112 (66.07%), Query Frame = 0

Query: 1   MGACATKPKADGSLAPAPEPEKRDVDAPVAVEPENKVDVPAVEEVAGEGNQSDRGKEVVD 60
           MGACATKPK D    PAP PEK   +  V V+       P   E   E NQSD+GKEV  
Sbjct: 1   MGACATKPKVDSGKVPAPVPEKNVEEKDVFVD----TVAPVEAEKIFEENQSDKGKEV-- 60

Query: 61  VDDDKVDDQSVKRRSLSNLFKEKEGSESIEFEKPAGETETLEAKETEIHTKE 113
           VDDDKVDDQSVKRRSLS+LFKEKEG   +  E PAGETE LE+KETE   KE
Sbjct: 61  VDDDKVDDQSVKRRSLSHLFKEKEGVNQL-CEGPAGETEKLESKETEKDGKE 105

BLAST of Cla97C02G027010 vs. NCBI nr
Match: XP_023007403.1 (neurofilament heavy polypeptide-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-17
Identity = 68/112 (60.71%), Postives = 74/112 (66.07%), Query Frame = 0

Query: 1   MGACATKPKADGSLAPAPEPEKRDVDAPVAVEPENKVDVPAVEEVAGEGNQSDRGKEVVD 60
           MGACATKPK D    PAP PEK   +  V V+       P   E   E NQSD+GKEV  
Sbjct: 1   MGACATKPKVDSGKVPAPVPEKNVEEKDVFVD----TVAPVEAEKIFEENQSDKGKEV-- 60

Query: 61  VDDDKVDDQSVKRRSLSNLFKEKEGSESIEFEKPAGETETLEAKETEIHTKE 113
           VDDDKVDDQSVKRRSLS+LFKEKEG   +  E PAGETE LE+KETE   KE
Sbjct: 61  VDDDKVDDQSVKRRSLSHLFKEKEGVNQL-CEGPAGETEKLESKETEKDGKE 105

BLAST of Cla97C02G027010 vs. TrEMBL
Match: tr|A0A1S3CDJ8|A0A1S3CDJ8_CUCME (neurofilament medium polypeptide-like OS=Cucumis melo OX=3656 GN=LOC103499656 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 52/118 (44.07%), Postives = 61/118 (51.69%), Query Frame = 0

Query: 251 EIPIERIQITDVP-TTSESIVVEKVITPT-SETXXXXXXXXXXXXXXXXXXXXXXXXXXX 310
           EIPIERIQITDVP TTSE+I VEKVI P+ S+                            
Sbjct: 197 EIPIERIQITDVPTTTSETITVEKVIAPSPSDVTPTSETSEEKRSEDVKLPEKVEKAEVV 256

Query: 311 XXXXXXXXXXXXXXXXXTETETAKDTEPKAIAPTESITKPAKGNDEAAKVTAEEKTTS 367
                            TETET K+TEPK +APTE+  KPA+  DE  KV+AEEKT+S
Sbjct: 257 TLVEVEPKKDDISDAKKTETETPKETEPKPVAPTETSAKPAEVKDEVVKVSAEEKTSS 314

BLAST of Cla97C02G027010 vs. TrEMBL
Match: tr|A0A2C9UPZ7|A0A2C9UPZ7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G077200 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-05
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 0

Query: 1   MGACATKPKA--DGSLAPAPEPEKRDVDAPVAVEPENKVD--VPAVEEVAGEGNQSDRGK 60
           MGACATKPK   D + AP   P+   V+  VAV   N+ +  VP V+EV  +    + G 
Sbjct: 1   MGACATKPKVLKDDAQAPVTAPDPA-VEEAVAVHQINREERSVPVVQEVKDKKVVENEGG 60

Query: 61  EVV---DVDDDKVDDQSVKRRSLSNLFKEKEG-SESIEFEKPAGE------TETLEAKET 112
           + V    VDDDK DDQS KRRSLS+LF+E EG  ES++  KP  E      + ++++ E 
Sbjct: 61  DKVIKEIVDDDKADDQSTKRRSLSHLFQESEGEKESVKRVKPLAEPVKPESSTSMKSPEE 120

BLAST of Cla97C02G027010 vs. TrEMBL
Match: tr|A0A2P4N2Z9|A0A2P4N2Z9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_06211 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = 0

Query: 1   MGACATKPKA-DGSLAPAPEPEKRDVDAPVAVEPENKVDVPAVE------EVAGEGNQSD 60
           MG CATKPK    + AP P  E++  DA   ++P+  + V A E      EV  +G + D
Sbjct: 1   MGGCATKPKVLKEASAPEPAKEEKLGDAVKPLKPQEDLTVKATEKIDIAKEVEDQGGEGD 60

Query: 61  RGKEVVDVDDDKVDDQSVKRRSLSNLFKE-KEGSESIEFEKPAGETETLEAKETEIHTKE 115
           + KE+  VDDDKVD+Q  +RRSLS LFK+ +EG +S     PA   E L+ +E  +  K 
Sbjct: 61  KSKEI--VDDDKVDEQGNRRRSLSLLFKQNEEGKDSTGDGNPA--VEPLKQEEPSVDKKP 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022947032.11.6e-1761.61uncharacterized protein LOC111451030 isoform X2 [Cucurbita moschata][more]
XP_022947031.11.6e-1761.61uncharacterized protein LOC111451030 isoform X1 [Cucurbita moschata][more]
XP_023007406.12.7e-1760.71serine-aspartate repeat-containing protein I-like isoform X4 [Cucurbita maxima][more]
XP_023007405.12.7e-1760.71serine-aspartate repeat-containing protein I-like isoform X3 [Cucurbita maxima][more]
XP_023007403.12.7e-1760.71neurofilament heavy polypeptide-like isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
tr|A0A1S3CDJ8|A0A1S3CDJ8_CUCME1.2e-0844.07neurofilament medium polypeptide-like OS=Cucumis melo OX=3656 GN=LOC103499656 PE... [more]
tr|A0A2C9UPZ7|A0A2C9UPZ7_MANES3.5e-0542.40Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G077200 PE=4 SV=... [more]
tr|A0A2P4N2Z9|A0A2P4N2Z9_QUESU6.1e-0540.16Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_06211 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004386 helicase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G027010.1Cla97C02G027010.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..336
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 301..366

The following gene(s) are paralogous to this gene:

None