CmoCh20G001030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G001030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ubiquitin-conjugating enzyme 19 family protein
Location	Cmo_Chr20 : 513811 .. 515590 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCATAACGTTCACTAAATTTTTTGAATATTTATCCTTCAATTCCAATCCCTAATTCTTCATCTATTTCCTTGGTTTTAAGCTCCCTAATTTCCTCTCTCCCCTTCTGCTCCGCCTCTCTCTCTCTGCCAACGTCTCATTGATACTTCTTTGGGGGAGAATTTCCTTGGATCCTTCTTGAATTCTTCATATCGTCTGTTATTCGGATCAGAGAGAATGGCGGCCATCAACCGACACACTGACAACACGACGCCGGCTAACGCTGTTGTTTCTCCAGCGAAGAAATCCTTGCCGCCGGCCAAAACCGCGGATTCTCAGTCCGTTCTCAAAAGGTATAAACATTTTTGTATCTTTTGGATTCCGTTACTATATCACTGCGGATCGACCGCTTTCCTGTGCGTCGCATCTGCTCTTTGCTTTATGTGATTTTGAGCCGTCGTTAAACTTTAAGCTGGATGAGGTAGTGATAGGGTCCTGGATTATGTAATCTTCTACCACTTGGTCTTTTTGTTCAAACTGATTTTGAGATAGATTGTTCTGTGGTCTTTCTCAACGAAATTTTTAGGGTTTGCGGGGTAATATGAGAGTTTTCTCAGGTCAGGTCCTCTTCCCTTAATTTAGCACCATGGTCATCCATATTGAAAGATATGTCTCTTACTTGTGTTGAAATTAGTGAAGAACCAGTCTTACTGGGAACTCCGTTTGTGTTCAACCAACTAACAATCTTCCTCTGATTTTTGGTGCTTTTACTTACACAGGTTGCAGTCTGAGTTAATGGCTTTAATGGTAATGTAAATTCTGAAATATTTGGAAATGTGATTCCACAGTTGCCAATAGGCTATTCTTAAAACTCGTGTATCTGAAATTGCAGATGAGCGGAGACTCTGGGATCTCAGCCTTTCCTGAGGAAGATAACATATTCTGCTGGAAAGGAACAATAACTGGAAGCAAAGACACAGTGTTTGAAGGAACAGAGTACAGGCTATCCTTTTCCTTCCCAAATGATTACCCTTTTAAGCCTCCAAAGGTGAAGTTCGAGACTGGCTGCTTTCACCCAAATGTGGACATTTACGGCAACATTTGCTTGGACATACTTCAGGTAACTAAGTTATGATAAAATCTTCGATATTGGAAGTGTAACTTCTATGATTTATCTATCAGAATGAAAAGAATCTGAAGTGAGAAATGTTTCATCTTTTGCAGGATAAATGGTCATCAGCATATGATGTGAGAACCATACTTCTATCCATCCAGAGTCTGCTTGGAGGTAACAACAACCTGAATCCTTTTATTTGGAATGGTTTTACTTGACTTGGATGGTTTTACTTCAACCTGAATCCTTTTAATTTGGAATCGAATCTAGAATTTGCAATGAGCCTTTGCCGTTTATTTGCAGAACCAAACATAAGTTCACCCCTGAACACCCAGGCAGCCCAATTGTGGAGCAATCAAGAAGGTGGGTTTCTAACTGTTGTTGTAACACACAATTTTTCTCAACTCTACGAGTTGCCTTGTGATGAAAGTTTTCTCACAAATGTTTCTGTGTTTGCTGTGTAGAATATCGGAAAATGGTGGAGAAATTGTACAAGCCTCCAACAGCAGCTTAGGAACAAGACTAGGATTTGTGTGTCTCACTCTTTTTGACCTAGAGAGGAGGAGATTCCCAAGTTATTTTTTTTTTCTCTTTCCTTCAGTATGATCTTCGTCTACTCTATTACTCCCAGGATGTTAGAGATATATGCTGCCTCCTGTTATATGTGGAAATTTCAAGTCATGAGC

mRNA sequence

CGCCCATAACGTTCACTAAATTTTTTGAATATTTATCCTTCAATTCCAATCCCTAATTCTTCATCTATTTCCTTGGTTTTAAGCTCCCTAATTTCCTCTCTCCCCTTCTGCTCCGCCTCTCTCTCTCTGCCAACGTCTCATTGATACTTCTTTGGGGGAGAATTTCCTTGGATCCTTCTTGAATTCTTCATATCGTCTGTTATTCGGATCAGAGAGAATGGCGGCCATCAACCGACACACTGACAACACGACGCCGGCTAACGCTGTTGTTTCTCCAGCGAAGAAATCCTTGCCGCCGGCCAAAACCGCGGATTCTCAGTCCGTTCTCAAAAGGTTGCAGTCTGAGTTAATGGCTTTAATGATGAGCGGAGACTCTGGGATCTCAGCCTTTCCTGAGGAAGATAACATATTCTGCTGGAAAGGAACAATAACTGGAAGCAAAGACACAGTGTTTGAAGGAACAGAGTACAGGCTATCCTTTTCCTTCCCAAATGATTACCCTTTTAAGCCTCCAAAGGTGAAGTTCGAGACTGGCTGCTTTCACCCAAATGTGGACATTTACGGCAACATTTGCTTGGACATACTTCAGGATAAATGGTCATCAGCATATGATGTGAGAACCATACTTCTATCCATCCAGAGTCTGCTTGGAGGTAACAACAACCTGAATCCTTTTATTTGGAATGAATTTGCAATGAGCCTTTGCCGTTTATTTGCAGAACCAAACATAAGTTCACCCCTGAACACCCAGGCAGCCCAATTGTGGAGCAATCAAGAAGGTGGGTTTCTAACTGTTGTTGTAACACACAATTTTTCTCAACTCTACGAGTTGCCTTGTGATGAAAAATATCGGAAAATGGTGGAGAAATTGTACAAGCCTCCAACAGCAGCTTAGGAACAAGACTAGGATTTGTGTGTCTCACTCTTTTTGACCTAGAGAGGAGGAGATTCCCAAGTTATTTTTTTTTTCTCTTTCCTTCAGTATGATCTTCGTCTACTCTATTACTCCCAGGATGTTAGAGATATATGCTGCCTCCTGTTATATGTGGAAATTTCAAGTCATGAGC

Coding sequence (CDS)

ATGGCGGCCATCAACCGACACACTGACAACACGACGCCGGCTAACGCTGTTGTTTCTCCAGCGAAGAAATCCTTGCCGCCGGCCAAAACCGCGGATTCTCAGTCCGTTCTCAAAAGGTTGCAGTCTGAGTTAATGGCTTTAATGATGAGCGGAGACTCTGGGATCTCAGCCTTTCCTGAGGAAGATAACATATTCTGCTGGAAAGGAACAATAACTGGAAGCAAAGACACAGTGTTTGAAGGAACAGAGTACAGGCTATCCTTTTCCTTCCCAAATGATTACCCTTTTAAGCCTCCAAAGGTGAAGTTCGAGACTGGCTGCTTTCACCCAAATGTGGACATTTACGGCAACATTTGCTTGGACATACTTCAGGATAAATGGTCATCAGCATATGATGTGAGAACCATACTTCTATCCATCCAGAGTCTGCTTGGAGGTAACAACAACCTGAATCCTTTTATTTGGAATGAATTTGCAATGAGCCTTTGCCGTTTATTTGCAGAACCAAACATAAGTTCACCCCTGAACACCCAGGCAGCCCAATTGTGGAGCAATCAAGAAGGTGGGTTTCTAACTGTTGTTGTAACACACAATTTTTCTCAACTCTACGAGTTGCCTTGTGATGAAAAATATCGGAAAATGGTGGAGAAATTGTACAAGCCTCCAACAGCAGCTTAG

Homology

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BLAST of CmoCh20G001030 vs. Swiss-Prot
Match: UBC20_ARATH (Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.0e-74
Identity = 149/224 (66.52%), Postives = 157/224 (70.09%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAA+N +  NT       + +K+   P KT DSQSVLKRLQSELM LMM G  GISAFPE
Sbjct: 1   MAAVNGYQGNTPADPPASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGPGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSKDTVFEGTEYRLS SF NDYPFKPPKVKFET CFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 180

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           QLWSNQ                      E+YRKMVEKLYKPP+A
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPSA 180

[Close]

BLAST of CmoCh20G001030 vs. Swiss-Prot
Match: UBC19_ARATH (Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-72
Identity = 147/225 (65.33%), Postives = 155/225 (68.89%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANA-VVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFP 60
           MA +N +T NT  A     + +K+S PP KT DS SVLKRLQSELM LMM  D GISAFP
Sbjct: 1   MATVNGYTGNTPAATTPAATGSKQSAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFP 60

Query: 61  EEDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNIC 120
           EEDNIFCWKGTITGSKDTVFEGTEYRLS +F NDYPFK PKVKFET CFHPNVD+YGNIC
Sbjct: 61  EEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNIC 120

Query: 121 LDILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQA 180
           LDILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLN QA
Sbjct: 121 LDILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNNQA 180

Query: 181 AQLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           AQLWSNQ                      E+YRKMVEKLYKP  A
Sbjct: 181 AQLWSNQ----------------------EEYRKMVEKLYKPLNA 181

[Close]

BLAST of CmoCh20G001030 vs. Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.9e-47
Identity = 99/178 (55.62%), Postives = 113/178 (63.48%), Query Frame = 1


Query: 8   TDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCW 67
           + N  PA   V+ A+K   P+  A    V KRLQ ELM LMMSGD GISAFPE DN+F W
Sbjct: 3   SQNRDPAATSVTAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKW 62

Query: 68  KGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKW 127
            GTI G+  TV+E   Y+LS  FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKW
Sbjct: 63  VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKW 122

Query: 128 SSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAAQLWSN 186
           S+ YDVRTILLSIQSLLG                      EPNI SPLNT AA+LW N
Sbjct: 123 SALYDVRTILLSIQSLLG----------------------EPNIDSPLNTHAAELWKN 158

[Close]

BLAST of CmoCh20G001030 vs. Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.9e-47
Identity = 99/178 (55.62%), Postives = 113/178 (63.48%), Query Frame = 1


Query: 8   TDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCW 67
           + N  P  A V+ A+K   P+  A    V KRLQ ELM LMMSGD GISAFPE DN+F W
Sbjct: 3   SQNRDPVAASVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKW 62

Query: 68  KGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKW 127
            GTI G+  TV+E   Y+LS  FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKW
Sbjct: 63  VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKW 122

Query: 128 SSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAAQLWSN 186
           S+ YDVRTILLSIQSLLG                      EPNI SPLNT AA+LW N
Sbjct: 123 SALYDVRTILLSIQSLLG----------------------EPNIDSPLNTHAAELWKN 158

[Close]

BLAST of CmoCh20G001030 vs. Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-46
Identity = 98/178 (55.06%), Postives = 113/178 (63.48%), Query Frame = 1


Query: 8   TDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCW 67
           + N  PA   V+ A+K   P+  A    V KRLQ ELM LMMSGD GISAFPE DN+F W
Sbjct: 3   SQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKW 62

Query: 68  KGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKW 127
            GTI G+  TV+E   Y+LS  FP+ YP+  P VKF T C+HPNVD  GNICLDIL++KW
Sbjct: 63  VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKW 122

Query: 128 SSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAAQLWSN 186
           S+ YDVRTILLSIQSLLG                      EPNI SPLNT AA+LW N
Sbjct: 123 SALYDVRTILLSIQSLLG----------------------EPNIDSPLNTHAAELWKN 158

[Close]

BLAST of CmoCh20G001030 vs. TrEMBL
Match: A0A0A0KF07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434330 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.5e-88
Identity = 174/225 (77.33%), Postives = 179/225 (79.56%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAAINR+TDNT PAN VVSPAK+SLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE
Sbjct: 1   MAAINRYTDNTAPANPVVSPAKQSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSK+TVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKETVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 180

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTAA 226
           QLWSNQ                      E+YRKMVEKLYKPPTAA
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPTAA 181

[Close]

BLAST of CmoCh20G001030 vs. TrEMBL
Match: A9PAG1_POPTR (Ubiquitin-conjugating enzyme 19 family protein OS=Populus trichocarpa GN=POPTR_0009s05420g PE=2 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 7.5e-77
Identity = 156/225 (69.33%), Postives = 167/225 (74.22%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAAIN HT    PA    +P+K+++P AKT D+QSVLKRLQSELMALMMSG+SGISAFPE
Sbjct: 1   MAAINGHTPVAAPAGT--TPSKQTVPSAKTVDTQSVLKRLQSELMALMMSGESGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
            DNIFCWKGTITGSKDTVFEGTEY+LS SFPNDYPFKPPKVKFET CFHPNVD+YGNICL
Sbjct: 61  GDNIFCWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 179

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTAA 226
           QLWSNQ                      E+YRKMVEKLYKPP+AA
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPSAA 179

[Close]

BLAST of CmoCh20G001030 vs. TrEMBL
Match: B9RIG7_RICCO (Ubiquitin-conjugating enzyme E2 C, putative OS=Ricinus communis GN=RCOM_1578930 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.2e-75
Identity = 152/224 (67.86%), Postives = 167/224 (74.55%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MA +N +  NT  A+A  +P+K+++P  KT D+QSVLKRLQSELMALMMSG+SGISAFPE
Sbjct: 1   MATVNGYQGNTPVASAG-APSKQTVPTVKTVDTQSVLKRLQSELMALMMSGESGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSKDTVFEGTEY+LS SFPNDYPFKPPKVKFET CFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTIL+SIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILISIQSLLG----------------------EPNISSPLNTQAA 179

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           QLWSNQ                      E+YRKMVEKLYKPP+A
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPSA 179

[Close]

BLAST of CmoCh20G001030 vs. TrEMBL
Match: E5GBT5_CUCME (Ubiquitin-conjugating enzyme OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-74
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAAINR+TDNT PAN VVSPAK+SLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE
Sbjct: 1   MAAINRYTDNTAPANPVVSPAKQSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSK+TVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKETVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLG 146
           DILQDKWSSAYDVRTILLSIQSLLG
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG 145

[Close]

BLAST of CmoCh20G001030 vs. TrEMBL
Match: A0A061GTP8_THECC (Ubiquitin-conjugating enzyme19 isoform 1 OS=Theobroma cacao GN=TCM_040797 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 154/224 (68.75%), Postives = 162/224 (72.32%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MA +N +  NT  A +  +  K+  P AKT DSQSVLKRLQSELMALMMSGDSGISAFPE
Sbjct: 1   MATVNGYQGNTPVATS--TGTKQPAPTAKTVDSQSVLKRLQSELMALMMSGDSGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSKDTVFEGTEYRLS +FPNDYPFKPPKVKFETGCFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSLAFPNDYPFKPPKVKFETGCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 178

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           QLWSNQ                      E+YRKMVEKLYK P A
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKAPNA 178

[Close]

BLAST of CmoCh20G001030 vs. TAIR10
Match: AT1G50490.1 (AT1G50490.1 ubiquitin-conjugating enzyme 20)

HSP 1 Score: 278.9 bits (712), Expect = 2.8e-75
Identity = 149/224 (66.52%), Postives = 157/224 (70.09%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAA+N +  NT       + +K+   P KT DSQSVLKRLQSELM LMM G  GISAFPE
Sbjct: 1   MAAVNGYQGNTPADPPASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGPGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSKDTVFEGTEYRLS SF NDYPFKPPKVKFET CFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 180

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           QLWSNQ                      E+YRKMVEKLYKPP+A
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPSA 180

[Close]

BLAST of CmoCh20G001030 vs. TAIR10
Match: AT3G20060.1 (AT3G20060.1 ubiquitin-conjugating enzyme19)

HSP 1 Score: 271.9 bits (694), Expect = 3.4e-73
Identity = 147/225 (65.33%), Postives = 155/225 (68.89%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANA-VVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFP 60
           MA +N +T NT  A     + +K+S PP KT DS SVLKRLQSELM LMM  D GISAFP
Sbjct: 1   MATVNGYTGNTPAATTPAATGSKQSAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFP 60

Query: 61  EEDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNIC 120
           EEDNIFCWKGTITGSKDTVFEGTEYRLS +F NDYPFK PKVKFET CFHPNVD+YGNIC
Sbjct: 61  EEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNIC 120

Query: 121 LDILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQA 180
           LDILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLN QA
Sbjct: 121 LDILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNNQA 180

Query: 181 AQLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           AQLWSNQ                      E+YRKMVEKLYKP  A
Sbjct: 181 AQLWSNQ----------------------EEYRKMVEKLYKPLNA 181

[Close]

BLAST of CmoCh20G001030 vs. TAIR10
Match: AT1G14400.1 (AT1G14400.1 ubiquitin carrier protein 1)

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-27
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = 1


Query: 38  KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFK 97
           KRL  +   L     +GIS  P+++NI  W   I G  DT ++G  ++LS  F  DYP K
Sbjct: 7   KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66

Query: 98  PPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNE 157
           PP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL             
Sbjct: 67  PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL------------- 126

Query: 158 FAMSLCRLFAEPNISSPLNTQAAQLWSNQE 188
                     +PN +SP N++AA+++S  +
Sbjct: 127 ---------CDPNPNSPANSEAARMYSESK 134

[Close]

BLAST of CmoCh20G001030 vs. TAIR10
Match: AT2G02760.1 (AT2G02760.1 ubiquiting-conjugating enzyme 2)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = 1


Query: 38  KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFK 97
           KRL  +   L     +GIS  P+++NI  W   I G  DT ++G  ++LS  F  DYP K
Sbjct: 7   KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66

Query: 98  PPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNE 157
           PP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL             
Sbjct: 67  PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL------------- 126

Query: 158 FAMSLCRLFAEPNISSPLNTQAAQLWSNQE 188
                     +PN +SP N++AA+++S  +
Sbjct: 127 ---------CDPNPNSPANSEAARMFSESK 134

[Close]

BLAST of CmoCh20G001030 vs. TAIR10
Match: AT5G62540.1 (AT5G62540.1 ubiquitin-conjugating enzyme 3)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-25
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 1


Query: 38  KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFK 97
           KRL  +   L      GIS  P+++NI  W   I G +DT ++G  ++L+  F  DYP K
Sbjct: 7   KRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNK 66

Query: 98  PPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNE 157
           PP V+F +  FHPN+   G+ICLDILQ++WS  YDV  +L SIQSLL             
Sbjct: 67  PPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLL------------- 126

Query: 158 FAMSLCRLFAEPNISSPLNTQAAQLWSNQE 188
                     +PN  SP N +AA+L+S  +
Sbjct: 127 ---------CDPNPDSPANAEAARLFSENK 134

[Close]

BLAST of CmoCh20G001030 vs. NCBI nr
Match: gi|449444891|ref|XP_004140207.1| (PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 2.1e-88
Identity = 174/225 (77.33%), Postives = 179/225 (79.56%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAAINR+TDNT PAN VVSPAK+SLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE
Sbjct: 1   MAAINRYTDNTAPANPVVSPAKQSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSK+TVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKETVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 180

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTAA 226
           QLWSNQ                      E+YRKMVEKLYKPPTAA
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPTAA 181

[Close]

BLAST of CmoCh20G001030 vs. NCBI nr
Match: gi|224106219|ref|XP_002314089.1| (ubiquitin-conjugating enzyme 19 family protein [Populus trichocarpa])

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-76
Identity = 156/225 (69.33%), Postives = 167/225 (74.22%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAAIN HT    PA    +P+K+++P AKT D+QSVLKRLQSELMALMMSG+SGISAFPE
Sbjct: 1   MAAINGHTPVAAPAGT--TPSKQTVPSAKTVDTQSVLKRLQSELMALMMSGESGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
            DNIFCWKGTITGSKDTVFEGTEY+LS SFPNDYPFKPPKVKFET CFHPNVD+YGNICL
Sbjct: 61  GDNIFCWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 179

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTAA 226
           QLWSNQ                      E+YRKMVEKLYKPP+AA
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPSAA 179

[Close]

BLAST of CmoCh20G001030 vs. NCBI nr
Match: gi|1009114721|ref|XP_015873839.1| (PREDICTED: ubiquitin-conjugating enzyme E2 20 [Ziziphus jujuba])

HSP 1 Score: 293.5 bits (750), Expect = 3.1e-76
Identity = 157/230 (68.26%), Postives = 167/230 (72.61%), Query Frame = 1


Query: 1   MAAINRHTDN------TTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSG 60
           MAA+N  ++        TP  A  +P K+SLPPAKT DSQSVLKRLQSELMALMMSGDSG
Sbjct: 1   MAAVNGFSETGHGYQTNTPVTAA-APTKQSLPPAKTVDSQSVLKRLQSELMALMMSGDSG 60

Query: 61  ISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDI 120
           ISAFPEEDNIFCWKGTI GSKDTVFEGTEYRLS SFPNDYPFKPPKVKFETGCFHPNVD+
Sbjct: 61  ISAFPEEDNIFCWKGTIIGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDV 120

Query: 121 YGNICLDILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSP 180
           YGNICLDILQDKWSSAYDVRT+L+SIQSLLG                      EPNISSP
Sbjct: 121 YGNICLDILQDKWSSAYDVRTVLISIQSLLG----------------------EPNISSP 180

Query: 181 LNTQAAQLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           LNTQAAQLW+NQ                      E+YRKMVEKLYK PTA
Sbjct: 181 LNTQAAQLWNNQ----------------------EEYRKMVEKLYKAPTA 185

[Close]

BLAST of CmoCh20G001030 vs. NCBI nr
Match: gi|923718622|ref|XP_013664335.1| (PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Brassica napus])

HSP 1 Score: 289.7 bits (740), Expect = 4.5e-75
Identity = 153/224 (68.30%), Postives = 161/224 (71.88%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MAA+N +  NT PA+      K+S PP KT DSQSVLKRLQSELM LMM GD GISAFPE
Sbjct: 1   MAAVNGYQGNTPPAS------KQSAPPTKTVDSQSVLKRLQSELMGLMMGGDPGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSKDTVFEGTEYRLS SF NDYPFKPPK+KF TGCFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKIKFHTGCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTILLSIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILLSIQSLLG----------------------EPNISSPLNTQAA 174

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           QLWSNQ                      E+YRKMVEKLYKPP+A
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPSA 174

[Close]

BLAST of CmoCh20G001030 vs. NCBI nr
Match: gi|255544950|ref|XP_002513536.1| (PREDICTED: ubiquitin-conjugating enzyme E2 20 [Ricinus communis])

HSP 1 Score: 289.7 bits (740), Expect = 4.5e-75
Identity = 152/224 (67.86%), Postives = 167/224 (74.55%), Query Frame = 1


Query: 1   MAAINRHTDNTTPANAVVSPAKKSLPPAKTADSQSVLKRLQSELMALMMSGDSGISAFPE 60
           MA +N +  NT  A+A  +P+K+++P  KT D+QSVLKRLQSELMALMMSG+SGISAFPE
Sbjct: 1   MATVNGYQGNTPVASAG-APSKQTVPTVKTVDTQSVLKRLQSELMALMMSGESGISAFPE 60

Query: 61  EDNIFCWKGTITGSKDTVFEGTEYRLSFSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL 120
           EDNIFCWKGTITGSKDTVFEGTEY+LS SFPNDYPFKPPKVKFET CFHPNVD+YGNICL
Sbjct: 61  EDNIFCWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDVYGNICL 120

Query: 121 DILQDKWSSAYDVRTILLSIQSLLGGNNNLNPFIWNEFAMSLCRLFAEPNISSPLNTQAA 180
           DILQDKWSSAYDVRTIL+SIQSLLG                      EPNISSPLNTQAA
Sbjct: 121 DILQDKWSSAYDVRTILISIQSLLG----------------------EPNISSPLNTQAA 179

Query: 181 QLWSNQEGGFLTVVVTHNFSQLYELPCDEKYRKMVEKLYKPPTA 225
           QLWSNQ                      E+YRKMVEKLYKPP+A
Sbjct: 181 QLWSNQ----------------------EEYRKMVEKLYKPPSA 179

The following BLAST results are available for this feature:

BLAST of CmoCh20G001030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBC20_ARATH	5.0e-74	66.52	Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1	[more]
UBC19_ARATH	6.1e-72	65.33	Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1	[more]
UBE2C_MACFA	8.9e-47	55.62	Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1	[more]
UBE2C_BOVIN	8.9e-47	55.62	Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1	[more]
UBE2C_HUMAN	2.6e-46	55.06	Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1	[more]

BLAST of CmoCh20G001030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF07_CUCSA	1.5e-88	77.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434330 PE=3 SV=1	[more]
A9PAG1_POPTR	7.5e-77	69.33	Ubiquitin-conjugating enzyme 19 family protein OS=Populus trichocarpa GN=POPTR_0...	[more]
B9RIG7_RICCO	3.2e-75	67.86	Ubiquitin-conjugating enzyme E2 C, putative OS=Ricinus communis GN=RCOM_1578930 ...	[more]
E5GBT5_CUCME	1.2e-74	95.86	Ubiquitin-conjugating enzyme OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A061GTP8_THECC	1.6e-74	68.75	Ubiquitin-conjugating enzyme19 isoform 1 OS=Theobroma cacao GN=TCM_040797 PE=3 S...	[more]

BLAST of CmoCh20G001030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50490.1	2.8e-75	66.52	ubiquitin-conjugating enzyme 20	[more]
AT3G20060.1	3.4e-73	65.33	ubiquitin-conjugating enzyme19	[more]
AT1G14400.1	8.3e-27	40.00	ubiquitin carrier protein 1	[more]
AT2G02760.1	1.1e-26	40.00	ubiquiting-conjugating enzyme 2	[more]
AT5G62540.1	4.6e-25	39.33	ubiquitin-conjugating enzyme 3	[more]

BLAST of CmoCh20G001030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444891\|ref\|XP_004140207.1\|	2.1e-88	77.33	PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cucumis sativus]	[more]
gi\|224106219\|ref\|XP_002314089.1\|	1.1e-76	69.33	ubiquitin-conjugating enzyme 19 family protein [Populus trichocarpa]	[more]
gi\|1009114721\|ref\|XP_015873839.1\|	3.1e-76	68.26	PREDICTED: ubiquitin-conjugating enzyme E2 20 [Ziziphus jujuba]	[more]
gi\|923718622\|ref\|XP_013664335.1\|	4.5e-75	68.30	PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Brassica napus]	[more]
gi\|255544950\|ref\|XP_002513536.1\|	4.5e-75	67.86	PREDICTED: ubiquitin-conjugating enzyme E2 20 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000608	UBQ-conjugat_E2
IPR016135	UBQ-conjugating_enzyme/RWD
IPR023313	UBQ-conjugating_AS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009690	cytokinin metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0015979	photosynthesis
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0010007	magnesium chelatase complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0016851	magnesium chelatase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001030.1	CmoCh20G001030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 39..153 score: 1.3
IPR000608	Ubiquitin-conjugating enzyme E2	PROFILE	PS50127	UBIQUITIN_CONJUGAT_2	coord: 38..192 score: 32
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	G3DSA:3.10.110.10		coord: 24..149 score: 6.5
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	unknown	SSF54495	UBC-like	coord: 29..154 score: 2.01
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBIQUITIN_CONJUGAT_1	coord: 108..123 scor
None	No IPR available	PANTHER	PTHR24067	UBIQUITIN-CONJUGATING ENZYME E2	coord: 19..148 score: 3.7E-78coord: 165..187 score: 3.7
None	No IPR available	PANTHER	PTHR24067:SF44	UBIQUITIN-CONJUGATING ENZYME E2 C	coord: 19..148 score: 3.7E-78coord: 165..187 score: 3.7
None	No IPR available	SMART	SM00212	ubc_7	coord: 38..224 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G001030	Cucsa.124010	Cucumber (Gy14) v1	cgycmoB0322
CmoCh20G001030	CmaCh20G000990	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G001030	CmaCh02G012670	Cucurbita maxima (Rimu)	cmacmoB607
CmoCh20G001030	Cla008564	Watermelon (97103) v1	cmowmB520
CmoCh20G001030	Csa6G434330	Cucumber (Chinese Long) v2	cmocuB552
CmoCh20G001030	MELO3C014573	Melon (DHL92) v3.5.1	cmomeB509
CmoCh20G001030	ClCG02G023030	Watermelon (Charleston Gray)	cmowcgB490
CmoCh20G001030	CSPI06G23980	Wild cucumber (PI 183967)	cmocpiB557
CmoCh20G001030	Cp4.1LG05g04820	Cucurbita pepo (Zucchini)	cmocpeB535
CmoCh20G001030	Cp4.1LG16g08660	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G001030	MELO3C014573.2	Melon (DHL92) v3.6.1	cmomedB585
CmoCh20G001030	CsaV3_6G039130	Cucumber (Chinese Long) v3	cmocucB0659
CmoCh20G001030	Cla97C02G049110	Watermelon (97103) v2	cmowmbB557
CmoCh20G001030	Bhi10G000213	Wax gourd	cmowgoB0687
CmoCh20G001030	CsGy6G023340	Cucumber (Gy14) v2	cgybcmoB777
CmoCh20G001030	Carg02694	Silver-seed gourd	carcmoB1236
CmoCh20G001030	Carg06891	Silver-seed gourd	carcmoB0709

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G001030	CmoCh02G013070	Cucurbita moschata (Rifu)	cmocmoB405

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G001030	Wax gourd	cmowgoB0700
CmoCh20G001030	Cucurbita moschata (Rifu)	cmocmoB071
CmoCh20G001030	Cucurbita moschata (Rifu)	cmocmoB115
CmoCh20G001030	Cucurbita maxima (Rimu)	cmacmoB093
CmoCh20G001030	Cucurbita maxima (Rimu)	cmacmoB151
CmoCh20G001030	Wild cucumber (PI 183967)	cmocpiB534
CmoCh20G001030	Cucumber (Chinese Long) v2	cmocuB528
CmoCh20G001030	Watermelon (Charleston Gray)	cmowcgB501
CmoCh20G001030	Watermelon (97103) v1	cmowmB506
CmoCh20G001030	Cucurbita pepo (Zucchini)	cmocpeB519
CmoCh20G001030	Cucurbita pepo (Zucchini)	cmocpeB526
CmoCh20G001030	Bottle gourd (USVL1VR-Ls)	cmolsiB484
CmoCh20G001030	Bottle gourd (USVL1VR-Ls)	cmolsiB512
CmoCh20G001030	Cucumber (Gy14) v2	cgybcmoB108
CmoCh20G001030	Silver-seed gourd	carcmoB0634
CmoCh20G001030	Cucumber (Chinese Long) v3	cmocucB0632
CmoCh20G001030	Watermelon (97103) v2	cmowmbB568