CmoCh19G008320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G008320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Serine/threonine-protein kinase pakG
Location	Cmo_Chr19 : 8161474 .. 8162158 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAGAAATCTCTTAAAAACCTCTCCCTCTACTTCCCCTTCACTCAACCCAGCGATTTTCCAGTTTCTCTTCCGATTGAGCCGCCGGAGTGCCGCCGCCGTCTATAATGGAGGACTGCCTGAGGGAGTCCATGCGAAAATTAGCCCTCTGGTTAACCAAAACCTTCAAGCCAATCATGACGCATGACGAGCTCGAACCTATTATGGTCACTCTAGGCTTTATCGCCTTGGAACCGGCCGTCAACGGCGCCGGAATCTCCTGGAAATCCTACAAATACTCCGCCGCAGATTGCCGTACTAAGTCTGTTTCTCCGCCGCCGCCAATACCGCGACTGCCGTATCCGAGGATCGACGGTCTTCATATTTATACGTACAGAGCATTTCTCGATGCCGTCAATTTTTATCTCGAGAAATTTGATATCTCCGATCTCTTCCATATTAGGTAACAATGTTGTTTAATCCTTTTAATTTTTGTGCTTTTTCTTTAATTTTGGTTGAAAATTTCTCTGTGCTTTTTTCGCTGCTGTTTCGCTTTTCGTTGATTTTGAACGTTTCATCATCCACCGCCTTTTCATTTATTTTCAAGTTTATGACGAAATTGATTGCTCTTTTCTAAAATTTCAACTCTGATTTTAGGAGATTTCTTGTCATAGTTACGGTTGACTACTGGTTTGATCGAGAATGA

mRNA sequence

CCAAAGAAATCTCTTAAAAACCTCTCCCTCTACTTCCCCTTCACTCAACCCAGCGATTTTCCAGTTTCTCTTCCGATTGAGCCGCCGGAGTGCCGCCGCCGTCTATAATGGAGGACTGCCTGAGGGAGTCCATGCGAAAATTAGCCCTCTGGTTAACCAAAACCTTCAAGCCAATCATGACGCATGACGAGCTCGAACCTATTATGGTCACTCTAGGCTTTATCGCCTTGGAACCGGCCGTCAACGGCGCCGGAATCTCCTGGAAATCCTACAAATACTCCGCCGCAGATTGCCGTACTAAGTCTGTTTCTCCGCCGCCGCCAATACCGCGACTGCCGTATCCGAGGATCGACGGTCTTCATATTTATACGTACAGAGCATTTCTCGATGCCGTCAATTTTTATCTCGAGAAATTTGATATCTCCGATCTCTTCCATATTAGGAGATTTCTTGTCATAGTTACGGTTGACTACTGGTTTGATCGAGAATGA

Coding sequence (CDS)

ATGGAGGACTGCCTGAGGGAGTCCATGCGAAAATTAGCCCTCTGGTTAACCAAAACCTTCAAGCCAATCATGACGCATGACGAGCTCGAACCTATTATGGTCACTCTAGGCTTTATCGCCTTGGAACCGGCCGTCAACGGCGCCGGAATCTCCTGGAAATCCTACAAATACTCCGCCGCAGATTGCCGTACTAAGTCTGTTTCTCCGCCGCCGCCAATACCGCGACTGCCGTATCCGAGGATCGACGGTCTTCATATTTATACGTACAGAGCATTTCTCGATGCCGTCAATTTTTATCTCGAGAAATTTGATATCTCCGATCTCTTCCATATTAGGAGATTTCTTGTCATAGTTACGGTTGACTACTGGTTTGATCGAGAATGA

Homology

[Close]

BLAST of CmoCh19G008320 vs. TrEMBL
Match: A0A0A0K4Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027830 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-56
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAGISWKSYKYSAA 60
           MEDCLRESMRKLA+W TKTFKPIMTHDELEPIM TLGFIALEPAVNGAGISWKSYKYSAA
Sbjct: 1   MEDCLRESMRKLAVWFTKTFKPIMTHDELEPIMATLGFIALEPAVNGAGISWKSYKYSAA 60

Query: 61  DCRTKSVSPPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR 113
           DCRTKSVSP PP PRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR
Sbjct: 61  DCRTKSVSPSPPTPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR 112

[Close]

BLAST of CmoCh19G008320 vs. TrEMBL
Match: A0A061E9H0_THECC (Serine/threonine-protein kinase pakG OS=Theobroma cacao GN=TCM_007595 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-36
Identity = 78/127 (61.42%), Postives = 92/127 (72.44%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAGISWKSYKYSAA 60
           MEDC+R  MRKLALW TKTFKP+MTHDELEPIM T+GF+ L P    + ++WK Y ++A+
Sbjct: 1   MEDCMRVCMRKLALWFTKTFKPLMTHDELEPIMATMGFVGLPPVQGTSAVAWKEYVHTAS 60

Query: 61  ---DCRTKS------------VSPPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDI 113
                R+KS             + PPP PRLPYPRIDGLHIYTYRAF+DAVNFYLE  DI
Sbjct: 61  PGLSWRSKSSYCLRSTAGESPTTTPPPRPRLPYPRIDGLHIYTYRAFIDAVNFYLEMCDI 120

[Close]

BLAST of CmoCh19G008320 vs. TrEMBL
Match: A0A0B0NX75_GOSAR (Tubulin--tyrosine ligase OS=Gossypium arboreum GN=F383_00989 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-35
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAG-ISWKSYKYSA 60
           MEDC+R SMRKLALW TKTFKP+MTHDEL+ IM T+GF+AL P       ++WK Y Y A
Sbjct: 1   MEDCMRLSMRKLALWYTKTFKPLMTHDELDHIMATMGFVALPPVQPTCSTVAWKEYVYMA 60

Query: 61  ADCRTKSVSP-----------PPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDL 113
           +  R+KS S             PP P+LPYPRIDGLHIYTYRAFLDAVNFYLE  DIS+L
Sbjct: 61  SPGRSKSSSSCLSGSCEPSTVEPPRPKLPYPRIDGLHIYTYRAFLDAVNFYLEMCDISEL 120

[Close]

BLAST of CmoCh19G008320 vs. TrEMBL
Match: A0A0D2RPH8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216100 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAG-ISWKSYKYSA 60
           MEDC+R SMRKLALW TKTFKP+MTHDEL+ IM T+GF+AL P       ++WK Y Y A
Sbjct: 1   MEDCMRLSMRKLALWYTKTFKPLMTHDELDHIMATMGFVALPPVQPTCSTLAWKEYVYMA 60

Query: 61  ADCRTKSVSP-----------PPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDL 113
           +  R+KS S             PP P+LPYPRIDGLHIYTYRAFLDAVNFYLE  DIS+L
Sbjct: 61  SPGRSKSSSSCLSGSCEPSTVEPPRPKLPYPRIDGLHIYTYRAFLDAVNFYLEMCDISEL 120

[Close]

BLAST of CmoCh19G008320 vs. TrEMBL
Match: W9QLL3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013738 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.9e-35
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGA-GISWKSYKYSA 60
           ME+ ++E MRKLA+W T+TFKPIMTHDELEPIM TLGF+ L P    A G  WK Y +SA
Sbjct: 1   MEEYMKECMRKLAMWYTRTFKPIMTHDELEPIMATLGFVGLPPTTTAAHGGPWKEYVFSA 60

Query: 61  ADCRTKS-----VSPPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR 113
              R  S     V+   P PRLPYPRIDGLHIYTYRAF+DAVNFYLE  D SDLFHIR
Sbjct: 61  GQWRANSSSGSSVAEAQPRPRLPYPRIDGLHIYTYRAFIDAVNFYLEMCDFSDLFHIR 118

[Close]

BLAST of CmoCh19G008320 vs. NCBI nr
Match: gi|449454317|ref|XP_004144902.1| (PREDICTED: uncharacterized protein LOC101221709 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAGISWKSYKYSAA 60
           MEDCLRESMRKLA+W TKTFKPIMTHDELEPIM TLGFIALEPAVNGAGISWKSYKYSAA
Sbjct: 1   MEDCLRESMRKLAVWFTKTFKPIMTHDELEPIMATLGFIALEPAVNGAGISWKSYKYSAA 60

Query: 61  DCRTKSVSPPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR 113
           DCRTKSVSP PP PRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR
Sbjct: 61  DCRTKSVSPSPPTPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR 112

[Close]

BLAST of CmoCh19G008320 vs. NCBI nr
Match: gi|659100634|ref|XP_008451192.1| (PREDICTED: uncharacterized protein LOC103492564 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-55
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAGISWKSYKYSAA 60
           MEDCLRESMRKLA+W TKTFKPIMTHDELEPIM TLGFIALEPAVNGAGISWKSYKY+AA
Sbjct: 1   MEDCLRESMRKLAVWFTKTFKPIMTHDELEPIMATLGFIALEPAVNGAGISWKSYKYTAA 60

Query: 61  DCRTKSVSPPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR 113
           DCRT SVSP PP PRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR
Sbjct: 61  DCRTTSVSPSPPTPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIR 112

[Close]

BLAST of CmoCh19G008320 vs. NCBI nr
Match: gi|590688992|ref|XP_007043102.1| (Serine/threonine-protein kinase pakG [Theobroma cacao])

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-36
Identity = 78/127 (61.42%), Postives = 92/127 (72.44%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAGISWKSYKYSAA 60
           MEDC+R  MRKLALW TKTFKP+MTHDELEPIM T+GF+ L P    + ++WK Y ++A+
Sbjct: 1   MEDCMRVCMRKLALWFTKTFKPLMTHDELEPIMATMGFVGLPPVQGTSAVAWKEYVHTAS 60

Query: 61  ---DCRTKS------------VSPPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDI 113
                R+KS             + PPP PRLPYPRIDGLHIYTYRAF+DAVNFYLE  DI
Sbjct: 61  PGLSWRSKSSYCLRSTAGESPTTTPPPRPRLPYPRIDGLHIYTYRAFIDAVNFYLEMCDI 120

[Close]

BLAST of CmoCh19G008320 vs. NCBI nr
Match: gi|1009109613|ref|XP_015891110.1| (PREDICTED: uncharacterized protein LOC107425612 [Ziziphus jujuba])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIA-LEPAVNGAGISWKSYKYSA 60
           ME+C++ESMRKLALW T+TFKPIMTHDELEPIM TLGF+  L P  + +G+ WK Y YSA
Sbjct: 1   MEECMKESMRKLALWHTRTFKPIMTHDELEPIMATLGFVGKLPPPPSSSGV-WKEYVYSA 60

Query: 61  -------ADCRTKSVS---PPPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLF 113
                  A C + S S   PPPP P+LPYPRIDGLHIYTYRAF+DAV+FY+   DISDLF
Sbjct: 61  GGWRFQFAKCGSVSGSGSDPPPPKPKLPYPRIDGLHIYTYRAFIDAVSFYIGMDDISDLF 120

[Close]

BLAST of CmoCh19G008320 vs. NCBI nr
Match: gi|728837794|gb|KHG17237.1| (Tubulin--tyrosine ligase [Gossypium arboreum])

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-35
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 1


Query: 1   MEDCLRESMRKLALWLTKTFKPIMTHDELEPIMVTLGFIALEPAVNGAG-ISWKSYKYSA 60
           MEDC+R SMRKLALW TKTFKP+MTHDEL+ IM T+GF+AL P       ++WK Y Y A
Sbjct: 1   MEDCMRLSMRKLALWYTKTFKPLMTHDELDHIMATMGFVALPPVQPTCSTVAWKEYVYMA 60

Query: 61  ADCRTKSVSP-----------PPPIPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDL 113
           +  R+KS S             PP P+LPYPRIDGLHIYTYRAFLDAVNFYLE  DIS+L
Sbjct: 61  SPGRSKSSSSCLSGSCEPSTVEPPRPKLPYPRIDGLHIYTYRAFLDAVNFYLEMCDISEL 120

The following BLAST results are available for this feature:

BLAST of CmoCh19G008320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G008320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Z6_CUCSA	1.8e-56	95.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027830 PE=4 SV=1	[more]
A0A061E9H0_THECC	1.6e-36	61.42	Serine/threonine-protein kinase pakG OS=Theobroma cacao GN=TCM_007595 PE=4 SV=1	[more]
A0A0B0NX75_GOSAR	4.0e-35	63.71	Tubulin--tyrosine ligase OS=Gossypium arboreum GN=F383_00989 PE=4 SV=1	[more]
A0A0D2RPH8_GOSRA	5.2e-35	63.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216100 PE=4 SV=1	[more]
W9QLL3_9ROSA	8.9e-35	65.25	Uncharacterized protein OS=Morus notabilis GN=L484_013738 PE=4 SV=1	[more]

BLAST of CmoCh19G008320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh19G008320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454317\|ref\|XP_004144902.1\|	2.7e-56	95.54	PREDICTED: uncharacterized protein LOC101221709 [Cucumis sativus]	[more]
gi\|659100634\|ref\|XP_008451192.1\|	2.9e-55	93.75	PREDICTED: uncharacterized protein LOC103492564 [Cucumis melo]	[more]
gi\|590688992\|ref\|XP_007043102.1\|	2.3e-36	61.42	Serine/threonine-protein kinase pakG [Theobroma cacao]	[more]
gi\|1009109613\|ref\|XP_015891110.1\|	2.0e-35	65.85	PREDICTED: uncharacterized protein LOC107425612 [Ziziphus jujuba]	[more]
gi\|728837794\|gb\|KHG17237.1\|	5.8e-35	63.71	Tubulin--tyrosine ligase [Gossypium arboreum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G008320.1	CmoCh19G008320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G008320	CmaCh11G013210	Cucurbita maxima (Rimu)	cmacmoB145
CmoCh19G008320	CmaCh19G008110	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G008320	Cla015728	Watermelon (97103) v1	cmowmB496
CmoCh19G008320	Csa7G027830	Cucumber (Chinese Long) v2	cmocuB518
CmoCh19G008320	MELO3C015697	Melon (DHL92) v3.5.1	cmomeB456
CmoCh19G008320	ClCG02G003270	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G008320	CSPI07G02250	Wild cucumber (PI 183967)	cmocpiB524
CmoCh19G008320	Lsi11G013050	Bottle gourd (USVL1VR-Ls)	cmolsiB457
CmoCh19G008320	Cp4.1LG15g06470	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G008320	Cp4.1LG04g04410	Cucurbita pepo (Zucchini)	cmocpeB492
CmoCh19G008320	MELO3C015697.2	Melon (DHL92) v3.6.1	cmomedB525
CmoCh19G008320	CsaV3_7G002100	Cucumber (Chinese Long) v3	cmocucB0622
CmoCh19G008320	Cla97C02G029810	Watermelon (97103) v2	cmowmbB512
CmoCh19G008320	Bhi05G001338	Wax gourd	cmowgoB0653
CmoCh19G008320	CsGy7G001970	Cucumber (Gy14) v2	cgybcmoB927
CmoCh19G008320	Carg18104	Silver-seed gourd	carcmoB1430
CmoCh19G008320	Carg04111	Silver-seed gourd	carcmoB0286

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G008320	CmoCh11G018000	Cucurbita moschata (Rifu)	cmocmoB108

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G008320	Cucumber (Gy14) v2	cgybcmoB763
CmoCh19G008320	Melon (DHL92) v3.6.1	cmomedB514
CmoCh19G008320	Silver-seed gourd	carcmoB0471
CmoCh19G008320	Silver-seed gourd	carcmoB1152
CmoCh19G008320	Cucumber (Chinese Long) v3	cmocucB0617
CmoCh19G008320	Cucurbita moschata (Rifu)	cmocmoB381
CmoCh19G008320	Cucurbita moschata (Rifu)	cmocmoB386
CmoCh19G008320	Cucumber (Gy14) v1	cgycmoB0210
CmoCh19G008320	Cucumber (Gy14) v1	cgycmoB0294
CmoCh19G008320	Cucurbita maxima (Rimu)	cmacmoB549
CmoCh19G008320	Cucurbita maxima (Rimu)	cmacmoB596
CmoCh19G008320	Wild cucumber (PI 183967)	cmocpiB520
CmoCh19G008320	Cucumber (Chinese Long) v2	cmocuB513
CmoCh19G008320	Melon (DHL92) v3.5.1	cmomeB443
CmoCh19G008320	Watermelon (Charleston Gray)	cmowcgB461
CmoCh19G008320	Cucurbita pepo (Zucchini)	cmocpeB483
CmoCh19G008320	Bottle gourd (USVL1VR-Ls)	cmolsiB452