CmoCh19G007020 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G007020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(CCHC-type zinc knuckle protein) (DNA-binding protein)
LocationCmo_Chr19 : 7410137 .. 7412180 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAAATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACATCGGGGTTTCAGGTTTCTGATTCTGATAAATTATGTATTTATCTCATATCTTATAGGTAGGATGGGGAAGAATTTGCAGTTGTGTTTTTTAAATCCATCTTTGGCTGTGGACATACCTTCCCCCGTCTTTTTTTGTGTACATTTCATTCGTTCATCAATTCGTATCTCGTTTCTTCTCAATACATGCATAGATACCTATCACACACATGGTCATGGAGTCTGTTTTAAAGGAATTATGTAGCCATTGCATTATTGGGTTTGCATATTTTGTGCTTGTCGAACTCGACAAATCTCTGCATTTACCATGCTTGAGCAGACATGGGCTTTCTCCTGCACCCCTACAATCTATGTAATATCCATGTTATACTAATTGTATGGTAATTGTATTTGATGTTTATGTTTCCGACTTTCGGACACGACCATGTATTAGTATGAAAAGTTGTTAATCTTAATCTGATTTTATTGCCAGTCGAGATAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCAAGAGAATGCCAAGATGTCGCAATTTGTCACAATTGTGGTCTCCCTGGGTAAGGAAACTTGATCTTATGCTTATTATCTTTGTCGCCTATTCAGATACATACGCTTATTATCTTCGTCGCCTATTCGGATACATACGCTTATTATCTTCGTCGCCTATTCGGATACAAATGGGAGAATACTTATTTTTTTTATGTACTTAAATATTCACCATTCTACTGGCATGCTATATTCCATTCTACTTGACATGAAAATTATGAATTTGGTTCCATTCTACTCGGTTTCACTAATCTTAATTTAGAATTTGAGATTTGAAGTTGACTCGAGGATATATTGTAAGATGCTATCAAGCAGGTTTTATGTGATTTAGGTCGGTGAGTGATTTTGAAATGGTTAAAATCACTTCAAAACATGGTTTTAATCATTTGCAATGAATTTTGCTGACACGAAAATCACATTCGAAGGATTTAAAACATGTCTTTGAGTAGTGATTTTAATCATTTCAATAGCACTCCTAAACATGGTTGAATCGGGTTATAATTGCATATTTGGCATACATTTGGTTGAACAATGACCCCCTTTTACTTATCACTTGATCTACTAGGCATATTGCTTCCGAGTGCACGACAAAGTCGCTATGTTGGAACTGTCGAGAACCCGGTCACATGGCAAGTAGCTGCCCTAATGAAGGCATCTGCCACACCTGTGGCAAGGCAGGACATCGGGCCAGGGAATGCACGGCTCCTCCGCTCCCCCCTGGCGACTTGAGGCTTTGCAATAATTGCTATAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCGTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAACGATCCTATTTGCAACTTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCGAAGTCCAACGTCCTCGGAGACCGAGTCGACCGAGGCAGTGGCGGTGGCAGTGTGCGTGGTGGTGCTGGTGGTTACCGGGATGTTGTGTGTAGGAAATGCCAGCAGCTTAGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGAGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTTATGGACCGTTATCCCCGGAGGTACTGATGATCAAAAGAGATAAAATCACACGTCCTCGACGAGGTTAGACCTTCAGATTTTGCTGGGAGTTTAGATAATCTGAGAACTAAACTTTATAGATTGCTCTACTCGGATGCATTGTAGTATTTGCTCGTGCTATTATTCCGAAACATTGCTATGCGGTTTAGACGATGAATTTTCGGTTTCATTGATCTTGGTTCTATGGTTCTAAATGATAAATATTTAAGAAATGTAGTATTTTATGCCATAAATTCAA

mRNA sequence

ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAAATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACATCGGGGTTTCAGTCGAGATAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCAAGAGAATGCCAAGATGTCGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCCGAGTGCACGACAAAGTCGCTATGTTGGAACTGTCGAGAACCCGGTCACATGGCAAGTAGCTGCCCTAATGAAGGCATCTGCCACACCTGTGGCAAGGCAGGACATCGGGCCAGGGAATGCACGGCTCCTCCGCTCCCCCCTGGCGACTTGAGGCTTTGCAATAATTGCTATAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCGTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAACGATCCTATTTGCAACTTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCGAAGTCCAACGTCCTCGGAGACCGAGTCGACCGAGGCAGTGGCGGTGGCAGTGTGCGTGGTGGTGCTGGTGGTTACCGGGATGTTGTGTGTAGGAAATGCCAGCAGCTTAGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGAGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTTATGGACCGTTATCCCCGGAGGTACTGATGATCAAAAGAGATAAAATCACACGTCCTCGACGAGGTTAGACCTTCAGATTTTGCTGGGAGTTTAGATAATCTGAGAACTAAACTTTATAGATTGCTCTACTCGGATGCATTGTAGTATTTGCTCGTGCTATTATTCCGAAACATTGCTATGCGGTTTAGACGATGAATTTTCGGTTTCATTGATCTTGGTTCTATGGTTCTAAATGATAAATATTTAAGAAATGTAGTATTTTATGCCATAAATTCAA

Coding sequence (CDS)

ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAAATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACATCGGGGTTTCAGTCGAGATAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCAAGAGAATGCCAAGATGTCGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCCGAGTGCACGACAAAGTCGCTATGTTGGAACTGTCGAGAACCCGGTCACATGGCAAGTAGCTGCCCTAATGAAGGCATCTGCCACACCTGTGGCAAGGCAGGACATCGGGCCAGGGAATGCACGGCTCCTCCGCTCCCCCCTGGCGACTTGAGGCTTTGCAATAATTGCTATAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCGTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAACGATCCTATTTGCAACTTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCGAAGTCCAACGTCCTCGGAGACCGAGTCGACCGAGGCAGTGGCGGTGGCAGTGTGCGTGGTGGTGCTGGTGGTTACCGGGATGTTGTGTGTAGGAAATGCCAGCAGCTTAGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGAGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTTATGGACCGTTATCCCCGGAGGTACTGA
Homology
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BLAST of CmoCh19G007020 vs. Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 1 

Query: 49  CKNCKRPGHFARECQDVAICHNCGLPGHIASECTTKSL-----CWNCREPGHMASSCPNE 108
           C  C + GH A +C    +C+NC  PGH+ ++CT         C+NC E GH+ S C  +
Sbjct: 6   CYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ 65

Query: 109 GICHTCGKAGHRARECTAPPLPPGDLRL-CNNCYKQGHIAADCTNEKA-----CNNCRKT 168
             C  C + GH +REC  P       ++ C  C    H+A DC  E       C  C + 
Sbjct: 66  R-CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQA 125

Query: 169 GHLARDCPNDPICNLCNVSGHVARQCPKS 187
           GH++RDC ND +C  CN +GH+++ CPK+
Sbjct: 126 GHMSRDCQNDRLCYNCNETGHISKDCPKA 153

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BLAST of CmoCh19G007020 vs. Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.1e-19
Identity = 63/198 (31.82%), Postives = 81/198 (40.91%), Query Frame = 1 

Query: 49  CKNCKRPGHFARECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHT 108
           C NC   GH AREC   +IC+NC   GH ASECT         EP         E  C+ 
Sbjct: 19  CYNCGENGHQARECTKGSICYNCNQTGHKASECT---------EP-------QQEKTCYA 78

Query: 109 CGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADC-TNEKA-------------CNNC 168
           CG AGH  R+C + P P      C  C + GHIA DC TN +              C  C
Sbjct: 79  CGTAGHLVRDCPSSPNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYAC 138

Query: 169 RKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRVDRGSGGGSVRGGAGGYRDVVC 228
              GH ARDC     C  C   GH + +C +++                         +C
Sbjct: 139 GSYGHQARDCTMGVKCYSCGKIGHRSFECQQAS----------------------DGQLC 177

Query: 229 RKCQQLSHMSRDCMGPLM 233
            KC Q  H++ +C  P++
Sbjct: 199 YKCNQPGHIAVNCTSPVI 177

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BLAST of CmoCh19G007020 vs. Swiss-Prot
Match: ZCH13_HUMAN (Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 1 

Query: 68  CHNCGLPGHIASECTTK-SLCWNCREPGHMASSCPN-----EGICHTCGKAGHRARECTA 127
           C+ CG  G  A  C    ++C+NC   GH+A  C +        C+TCG+ GH AR+C  
Sbjct: 47  CYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDR 106

Query: 128 PPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 165
                   + C +C K GHI  DC   K C  C + GH+A +C
Sbjct: 107 Q-----KEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGHVAINC 143

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BLAST of CmoCh19G007020 vs. Swiss-Prot
Match: AIR1_SCHPO (Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=air1 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-08
Identity = 39/141 (27.66%), Postives = 55/141 (39.01%), Query Frame = 1 

Query: 44  SRDNLCKNCKRPGHFARECQDVAICHNCG-LPGHIASECTTKSLCWNCREPGHMASSCP- 103
           S   +C NCK  GH +++C  V +C  CG +  HI+  C     C NC   GH+A+ C  
Sbjct: 86  SESIVCHNCKGNGHISKDCPHV-LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSE 145

Query: 104 ----NEGICHTCGKAGHRARECT-----------APPLPPGDLR-LCNNCYKQGHIAADC 163
                  +C TC    H +  C               +   ++R  C NC    H   DC
Sbjct: 146 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDC 205

Query: 164 TNEKACNNCRKTGHLARDCPN 167
           T     N    T     +CP+
Sbjct: 206 TLPSRSNYPESTAFCEANCPS 225

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BLAST of CmoCh19G007020 vs. Swiss-Prot
Match: GAG_FIVWO (Gag polyprotein OS=Feline immunodeficiency virus (isolate Wo) GN=gag PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 

Query: 48  LCKNCKRPGHFARECQDVAICHNCGLPGHIASEC 82
           +C NCKRPGH AR+C+DV  C+ CG PGH+A++C
Sbjct: 376 VCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKC 409

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BLAST of CmoCh19G007020 vs. TrEMBL
Match: A0A0A0K138_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006230 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 3.0e-146
Identity = 245/262 (93.51%), Postives = 249/262 (95.04%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  PLDRKIRSDRFSYRDAPYRRES RGFSRDNLCKNCKRPGHFAR
Sbjct: 1   MSSDSRSRSRSRSRS--PLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRAR+CT
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCT 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRG--SGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCG 240
           RQCPKSNVLGDR DRG  SGGGS RG   GYRDVVCR CQQL HMSRDCMGPLMICHNCG
Sbjct: 181 RQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCG 240

Query: 241 GRGHLAYECPSGRFMDRYPRRY 261
           GRGHLAYECPSGRFMDR+PRRY
Sbjct: 241 GRGHLAYECPSGRFMDRFPRRY 260

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BLAST of CmoCh19G007020 vs. TrEMBL
Match: K7KSE0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G008500 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 6.3e-144
Identity = 238/261 (91.19%), Postives = 247/261 (94.64%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  P+DRKIRSDRFSYRDAPYRR+S RGFSRDNLCKNCKRPGH+AR
Sbjct: 1   MSSDSRSRSRSRSRS--PMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNC+EPGHMASSCPNEGICHTCGKAGHRAREC+
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEGICHTCGKAGHRARECS 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRGSGGGSVR-GGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCGG 240
           RQCPK+NVLGDR   G GGG  R GG GGYRDVVCR CQQL HMSRDCMGPLMICHNCGG
Sbjct: 181 RQCPKANVLGDRSGGGGGGGGARGGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG 240

Query: 241 RGHLAYECPSGRFMDRYPRRY 261
           RGHLAYECPSGRFMDRYPRRY
Sbjct: 241 RGHLAYECPSGRFMDRYPRRY 259

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BLAST of CmoCh19G007020 vs. TrEMBL
Match: A0A0L9UHB1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g249800 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 1.2e-142
Identity = 235/261 (90.04%), Postives = 247/261 (94.64%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  P+DRKIRSDRFSYRDAPYRR+S RGFSRDNLCKNCKRPGH+AR
Sbjct: 1   MSSDSRSRSRSRSRS--PMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNC+EPGHMAS+CPNEGICHTCGKAGHRARECT
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECT 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRGSGGGS-VRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCGG 240
           RQCPK+NV+GDR   G GGG+   GG GGYRDV+CR CQQL HMSRDCMGPLMICHNCGG
Sbjct: 181 RQCPKANVIGDRSGGGGGGGARGGGGGGGYRDVICRNCQQLGHMSRDCMGPLMICHNCGG 240

Query: 241 RGHLAYECPSGRFMDRYPRRY 261
           RGHLAYECPSGRFMDRYPRRY
Sbjct: 241 RGHLAYECPSGRFMDRYPRRY 259

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BLAST of CmoCh19G007020 vs. TrEMBL
Match: V7AQT1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G003600g PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 3.5e-142
Identity = 235/264 (89.02%), Postives = 247/264 (93.56%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  P+DRKIRSDRFSYRDAPYRR+S RGFSRDNLCKNCKRPGH+AR
Sbjct: 1   MSSDSRSRSRSRSRS--PMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNC+EPGHMAS+CPNEGICHTCGKAGHRARECT
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECT 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAA+CTN+KACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAAECTNDKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRV----DRGSGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHN 240
           RQCPK+NVLGDR       G GGG+  GG GGYRDV+CR CQQL HMSRDCMGPLMICHN
Sbjct: 181 RQCPKANVLGDRSGGGGGGGGGGGARGGGGGGYRDVICRNCQQLGHMSRDCMGPLMICHN 240

Query: 241 CGGRGHLAYECPSGRFMDRYPRRY 261
           CGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 241 CGGRGHLAYECPSGRFMDRYPRRY 262

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BLAST of CmoCh19G007020 vs. TrEMBL
Match: A0A0B2RNJ1_GLYSO (DNA-binding protein HEXBP OS=Glycine soja GN=glysoja_013724 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 4.5e-142
Identity = 235/260 (90.38%), Postives = 245/260 (94.23%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRS    P+DRKIRSDRFSYRDAPYRR+S RGFSRDNLCKNCKRPGH+AR
Sbjct: 1   MSSDSRSRSRSRS----PMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNC+EPGHMASSCPNEGICHTCGKAGHRAREC+
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEGICHTCGKAGHRARECS 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRGSGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCGGR 240
           RQCPK+NVLGDR   G GGG+  GG GGYRDVVCR CQQL HMSRDCMGPLMICHNCGGR
Sbjct: 181 RQCPKANVLGDR--SGGGGGARGGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMDRYPRRY 261
           GHLAYECPSGRFMDRYPRRY
Sbjct: 241 GHLAYECPSGRFMDRYPRRY 254

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BLAST of CmoCh19G007020 vs. TAIR10
Match: AT1G75560.1 (AT1G75560.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-95
Identity = 172/271 (63.47%), Postives = 201/271 (74.17%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSR------SPLDRKIRSDRFSYRDAPYRRESH--RGFSRDNLCKNC 60
           MSS SRSRSRSRSRSR      SP DR++RS+R SY DAP RRE    R FS+ NLC NC
Sbjct: 1   MSSMSRSRSRSRSRSRDRFRSRSPRDRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNC 60

Query: 61  KRPGHFARECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKA 120
           KRPGHFAR+C +V++C+NCGLPGHIA+ECT +S CWNCREPGH+AS+C NEGICH+CGK+
Sbjct: 61  KRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKS 120

Query: 121 GHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNL 180
           GHRAR+C+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+
Sbjct: 121 GHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNI 180

Query: 181 CNVSGHVARQCPKSNV-LGDRVDRGSGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMG-- 240
           C++SGHVAR CPK +    DR  R   GG  RGG              LS MSRD  G  
Sbjct: 181 CSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGG--------------LSRMSRDREGVS 240

Query: 241 PLMICHNCGGRGHLAYECPSGRFMDRYPRRY 261
            ++ICHNCGGRGH AYECPS R  DR  RRY
Sbjct: 241 AMIICHNCGGRGHRAYECPSARVADRGFRRY 257

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BLAST of CmoCh19G007020 vs. TAIR10
Match: AT4G36020.1 (AT4G36020.1 cold shock domain protein 1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 71/217 (32.72%), Postives = 92/217 (42.40%), Query Frame = 1 

Query: 49  CKNCKRPGHFAREC-------------QDVAICHNCGLPGHIASECTTKSLCWNCREPGH 108
           C NC   GH +++C             +    C+NCG  GH A +CT+     N  + G 
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAG---NGDQRG- 161

Query: 109 MASSCPNEGICHTCGKAGHRARECTAPPLPPGDLR--------LCNNCYKQGHIAADCTN 168
            A+   N+G C+TCG  GH AR+CT   +  GD R         C  C   GH A DCT 
Sbjct: 162 -ATKGGNDG-CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQ 221

Query: 169 EKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNVLG 228
           + A             C +C   GH+ARDC         C  C  SGH+AR C +     
Sbjct: 222 KVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ----- 281

[Close]
BLAST of CmoCh19G007020 vs. TAIR10
Match: AT3G42860.1 (AT3G42860.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-12
Identity = 44/129 (34.11%), Postives = 61/129 (47.29%), Query Frame = 1 

Query: 49  CKNCKRPGHFAREC------------QDVAICHNCGLPGHIASECTTKSLCWNCR-EPGH 108
           C  C + GH+AR+C                 C  CG PGH + +CT +S   N + EPG 
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS--GNPKYEPGQ 298

Query: 109 MASSCPNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCR 165
           M SS  + G C+ CGK GH +R+CT         +  N  ++ G  A   ++   C  C 
Sbjct: 299 MKSS-SSSGECYKCGKQGHWSRDCTG--------QSSNQQFQSGQ-AKSTSSTGDCYKCG 355

[Close]
BLAST of CmoCh19G007020 vs. TAIR10
Match: AT2G17870.1 (AT2G17870.1 cold shock domain protein 3)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-11
Identity = 62/202 (30.69%), Postives = 77/202 (38.12%), Query Frame = 1 

Query: 49  CKNCKRPGHFARECQDVA------------ICHNCGLPGHIASECTTKSLCWNCREPGHM 108
           C  C   GHFAR+C+                C++CG  GH+A +C   S     R  G  
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS--GGNRYGGGG 191

Query: 109 ASSCPNEGICHTCGKAGHRAREC--TAPPLPPGDLRLCNNCYKQGHIAADCTNE------ 168
                 +G C+ CG  GH AR+C         G    C  C   GHIA  CT++      
Sbjct: 192 GRGSGGDG-CYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGG 251

Query: 169 ---KACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRVDRGSGGGSVRGG 228
              +AC  C  TGHLARDC                          DR  RGSG     GG
Sbjct: 252 GGGRACYECGGTGHLARDC--------------------------DR--RGSGSS---GG 297

[Close]
BLAST of CmoCh19G007020 vs. TAIR10
Match: AT3G43590.1 (AT3G43590.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 42/155 (27.10%), Postives = 58/155 (37.42%), Query Frame = 1 

Query: 106 CHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCP 165
           C++CG+ GH +  C   P P    + C  C    H A  C+    C  C+KTGH A+DCP
Sbjct: 168 CYSCGEQGHTSFNC---PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCP 227

Query: 166 N-------DPICNLCNVSGHVARQCPKSNVLGDRVDRGSGGGSVRGGAGGYRDVVCRKCQ 225
           +         +C  C   GH    C       D                  +DV C  C+
Sbjct: 228 DKYKNGSKGAVCLRCGDFGHDMILCKYEYSKED-----------------LKDVQCYICK 287

Query: 226 QLSHMSRDCMGP------LMICHNCGGRGHLAYEC 248
              H+   C+ P       + C+ CG  GH    C
Sbjct: 288 SFGHLC--CVEPGNSLSWAVSCYRCGQLGHSGLAC 300

[Close]
BLAST of CmoCh19G007020 vs. NCBI nr
Match: gi|659094428|ref|XP_008448055.1| (PREDICTED: zinc finger protein GIS2 [Cucumis melo])

HSP 1 Score: 528.1 bits (1359), Expect = 8.7e-147
Identity = 247/262 (94.27%), Postives = 249/262 (95.04%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  PLDRKIRSDRFSYRDAPYRRES RGFSRDNLCKNCKRPGHFAR
Sbjct: 1   MSSDSRSRSRSRSRS--PLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRAR+CT
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCT 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRG--SGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCG 240
           RQCPKSNVLGDR DRG  SGGGS RG   GYRDVVCR CQQL HMSRDCMGPLMICHNCG
Sbjct: 181 RQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCG 240

Query: 241 GRGHLAYECPSGRFMDRYPRRY 261
           GRGHLAYECPSGRFMDRYPRRY
Sbjct: 241 GRGHLAYECPSGRFMDRYPRRY 260

[Close]
BLAST of CmoCh19G007020 vs. NCBI nr
Match: gi|449461615|ref|XP_004148537.1| (PREDICTED: zinc finger protein GIS2 [Cucumis sativus])

HSP 1 Score: 525.8 bits (1353), Expect = 4.3e-146
Identity = 245/262 (93.51%), Postives = 249/262 (95.04%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  PLDRKIRSDRFSYRDAPYRRES RGFSRDNLCKNCKRPGHFAR
Sbjct: 1   MSSDSRSRSRSRSRS--PLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRAR+CT
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCT 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRG--SGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCG 240
           RQCPKSNVLGDR DRG  SGGGS RG   GYRDVVCR CQQL HMSRDCMGPLMICHNCG
Sbjct: 181 RQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCG 240

Query: 241 GRGHLAYECPSGRFMDRYPRRY 261
           GRGHLAYECPSGRFMDR+PRRY
Sbjct: 241 GRGHLAYECPSGRFMDRFPRRY 260

[Close]
BLAST of CmoCh19G007020 vs. NCBI nr
Match: gi|356516892|ref|XP_003527126.1| (PREDICTED: zinc finger protein GIS2-like [Glycine max])

HSP 1 Score: 518.1 bits (1333), Expect = 9.0e-144
Identity = 238/261 (91.19%), Postives = 247/261 (94.64%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  P+DRKIRSDRFSYRDAPYRR+S RGFSRDNLCKNCKRPGH+AR
Sbjct: 1   MSSDSRSRSRSRSRS--PMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNC+EPGHMASSCPNEGICHTCGKAGHRAREC+
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEGICHTCGKAGHRARECS 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRGSGGGSVR-GGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCGG 240
           RQCPK+NVLGDR   G GGG  R GG GGYRDVVCR CQQL HMSRDCMGPLMICHNCGG
Sbjct: 181 RQCPKANVLGDRSGGGGGGGGARGGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG 240

Query: 241 RGHLAYECPSGRFMDRYPRRY 261
           RGHLAYECPSGRFMDRYPRRY
Sbjct: 241 RGHLAYECPSGRFMDRYPRRY 259

[Close]
BLAST of CmoCh19G007020 vs. NCBI nr
Match: gi|950977305|ref|XP_014501462.1| (PREDICTED: zinc finger protein GIS2 [Vigna radiata var. radiata])

HSP 1 Score: 515.0 bits (1325), Expect = 7.6e-143
Identity = 235/260 (90.38%), Postives = 247/260 (95.00%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  P+DRKIRSDRFSYRDAPYRR+S RGFSRDNLCKNCKRPGH+AR
Sbjct: 1   MSSDSRSRSRSRSRS--PMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNC+EPGHMAS+CPNEGICHTCGKAGHRARECT
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECT 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRGSGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCGGR 240
           RQCPK+NV+GDR   G GGG+  GG GGYRDV+CR CQQL HMSRDCMGPLMICHNCGGR
Sbjct: 181 RQCPKANVIGDR-SSGGGGGARGGGGGGYRDVICRNCQQLGHMSRDCMGPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMDRYPRRY 261
           GHLAYECPSGRFMDRYPRRY
Sbjct: 241 GHLAYECPSGRFMDRYPRRY 257

[Close]
BLAST of CmoCh19G007020 vs. NCBI nr
Match: gi|920699075|gb|KOM42300.1| (hypothetical protein LR48_Vigan04g249800 [Vigna angularis])

HSP 1 Score: 513.8 bits (1322), Expect = 1.7e-142
Identity = 235/261 (90.04%), Postives = 247/261 (94.64%), Query Frame = 1 

Query: 1   MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFAR 60
           MSSDSRSRSRSRSRS  P+DRKIRSDRFSYRDAPYRR+S RGFSRDNLCKNCKRPGH+AR
Sbjct: 1   MSSDSRSRSRSRSRS--PMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYAR 60

Query: 61  ECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECT 120
           EC +VAICHNCGLPGHIASECTTKSLCWNC+EPGHMAS+CPNEGICHTCGKAGHRARECT
Sbjct: 61  ECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECT 120

Query: 121 APPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180
           APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA
Sbjct: 121 APPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVA 180

Query: 181 RQCPKSNVLGDRVDRGSGGGS-VRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCGG 240
           RQCPK+NV+GDR   G GGG+   GG GGYRDV+CR CQQL HMSRDCMGPLMICHNCGG
Sbjct: 181 RQCPKANVIGDRSGGGGGGGARGGGGGGGYRDVICRNCQQLGHMSRDCMGPLMICHNCGG 240

Query: 241 RGHLAYECPSGRFMDRYPRRY 261
           RGHLAYECPSGRFMDRYPRRY
Sbjct: 241 RGHLAYECPSGRFMDRYPRRY 259

The following BLAST results are available for this feature:
BLAST of CmoCh19G007020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GIS2_YEAST2.9e-2536.24Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... [more]
BYR3_SCHPO9.1e-1931.82Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (stra... [more]
ZCH13_HUMAN2.0e-1035.92Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV... [more]
AIR1_SCHPO5.5e-0827.66Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=air1 PE=1... [more]
GAG_FIVWO1.2e-0761.76Gag polyprotein OS=Feline immunodeficiency virus (isolate Wo) GN=gag PE=3 SV=1[more]
BLAST of CmoCh19G007020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K138_CUCSA3.0e-14693.51Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006230 PE=4 SV=1[more]
K7KSE0_SOYBN6.3e-14491.19Uncharacterized protein OS=Glycine max GN=GLYMA_06G008500 PE=4 SV=1[more]
A0A0L9UHB1_PHAAN1.2e-14290.04Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g249800 PE=4 SV=1[more]
V7AQT1_PHAVU3.5e-14289.02Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G003600g PE=4 SV=1[more]
A0A0B2RNJ1_GLYSO4.5e-14290.38DNA-binding protein HEXBP OS=Glycine soja GN=glysoja_013724 PE=4 SV=1[more]
BLAST of CmoCh19G007020 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75560.11.3e-9563.47 zinc knuckle (CCHC-type) family protein[more]
AT4G36020.12.3e-2032.72 cold shock domain protein 1[more]
AT3G42860.16.7e-1234.11 zinc knuckle (CCHC-type) family protein[more]
AT2G17870.14.3e-1130.69 cold shock domain protein 3[more]
AT3G43590.11.8e-0927.10 zinc knuckle (CCHC-type) family protein[more]
BLAST of CmoCh19G007020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094428|ref|XP_008448055.1|8.7e-14794.27PREDICTED: zinc finger protein GIS2 [Cucumis melo][more]
gi|449461615|ref|XP_004148537.1|4.3e-14693.51PREDICTED: zinc finger protein GIS2 [Cucumis sativus][more]
gi|356516892|ref|XP_003527126.1|9.0e-14491.19PREDICTED: zinc finger protein GIS2-like [Glycine max][more]
gi|950977305|ref|XP_014501462.1|7.6e-14390.38PREDICTED: zinc finger protein GIS2 [Vigna radiata var. radiata][more]
gi|920699075|gb|KOM42300.1|1.7e-14290.04hypothetical protein LR48_Vigan04g249800 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G007020.1CmoCh19G007020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 76..102
score: 7.2E-13coord: 49..75
score: 7.7E-10coord: 151..185
score: 1.0E-11coord: 106..148
score: 3.7E-12coord: 212..249
score: 2.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 233..249
score: 1.8E-5coord: 105..120
score: 2.2E-5coord: 169..185
score: 0.0015coord: 68..82
score: 2.5E-5coord: 131..147
score: 0.0028coord: 48..63
score: 2.9E-5coord: 150..166
score: 2.7E-6coord: 213..227
score: 0.0015coord: 87..102
score: 7.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 105..121
score: 0.0033coord: 150..166
score: 1.4E-4coord: 233..249
score: 0.001coord: 67..83
score: 0.0017coord: 169..185
score: 0.02coord: 213..229
score: 0.057coord: 131..147
score: 0.0078coord: 86..102
score: 1.8E-4coord: 48..64
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 49..64
score: 9.274coord: 132..147
score: 8.796coord: 234..249
score: 9.834coord: 170..185
score: 8.614coord: 106..119
score: 9.916coord: 68..81
score: 9.504coord: 151..166
score: 10.015coord: 87..102
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 34..63
score: 7.59E-6coord: 205..251
score: 1.67E-10coord: 66..103
score: 9.72E-11coord: 127..167
score: 3.7
NoneNo IPR availablePANTHERPTHR23002ZINC FINGER CCHC DOMAIN CONTAINING PROTEINcoord: 1..254
score: 4.0E
NoneNo IPR availablePANTHERPTHR23002:SF65SUBFAMILY NOT NAMEDcoord: 1..254
score: 4.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G007020CmaCh11G010780Cucurbita maxima (Rimu)cmacmoB146
CmoCh19G007020CmaCh19G006910Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G007020Cla015888Watermelon (97103) v1cmowmB496
CmoCh19G007020Csa7G006230Cucumber (Chinese Long) v2cmocuB518
CmoCh19G007020MELO3C013423Melon (DHL92) v3.5.1cmomeB453
CmoCh19G007020ClCG02G004610Watermelon (Charleston Gray)cmowcgB459
CmoCh19G007020CSPI07G00360Wild cucumber (PI 183967)cmocpiB524
CmoCh19G007020Cp4.1LG04g01040Cucurbita pepo (Zucchini)cmocpeB495
CmoCh19G007020Cp4.1LG15g05600Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G007020MELO3C013423.2Melon (DHL92) v3.6.1cmomedB522
CmoCh19G007020CsaV3_7G000350Cucumber (Chinese Long) v3cmocucB0622
CmoCh19G007020Cla97C02G031580Watermelon (97103) v2cmowmbB512
CmoCh19G007020Bhi05G001132Wax gourdcmowgoB0641
CmoCh19G007020CsGy7G000300Cucumber (Gy14) v2cgybcmoB927
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh19G007020CmoCh11G010990Cucurbita moschata (Rifu)cmocmoB111
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G007020Cucurbita maxima (Rimu)cmacmoB548
CmoCh19G007020Cucurbita maxima (Rimu)cmacmoB599
CmoCh19G007020Wild cucumber (PI 183967)cmocpiB500
CmoCh19G007020Cucumber (Chinese Long) v2cmocuB495
CmoCh19G007020Watermelon (Charleston Gray)cmowcgB455
CmoCh19G007020Watermelon (97103) v1cmowmB499
CmoCh19G007020Cucurbita pepo (Zucchini)cmocpeB484
CmoCh19G007020Cucurbita pepo (Zucchini)cmocpeB499
CmoCh19G007020Bottle gourd (USVL1VR-Ls)cmolsiB451
CmoCh19G007020Bottle gourd (USVL1VR-Ls)cmolsiB457
CmoCh19G007020Bottle gourd (USVL1VR-Ls)cmolsiB483
CmoCh19G007020Cucumber (Gy14) v2cgybcmoB202
CmoCh19G007020Cucumber (Gy14) v2cgybcmoB205
CmoCh19G007020Melon (DHL92) v3.6.1cmomedB527
CmoCh19G007020Silver-seed gourdcarcmoB0433
CmoCh19G007020Silver-seed gourdcarcmoB1316
CmoCh19G007020Cucumber (Chinese Long) v3cmocucB0590
CmoCh19G007020Cucumber (Chinese Long) v3cmocucB0594
CmoCh19G007020Watermelon (97103) v2cmowmbB506
CmoCh19G007020Wax gourdcmowgoB0653
CmoCh19G007020Wax gourdcmowgoB0662
CmoCh19G007020Wax gourdcmowgoB0665
CmoCh19G007020Cucurbita moschata (Rifu)cmocmoB382
CmoCh19G007020Cucurbita moschata (Rifu)cmocmoB388
CmoCh19G007020Cucumber (Gy14) v1cgycmoB0251
CmoCh19G007020Cucumber (Gy14) v1cgycmoB1037