Cla015888 (gene) Watermelon (97103) v1

Overview
NameCla015888
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCellular nucleic acid-binding protein (AHRD V1 **-* B6T3W5_MAIZE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type
LocationChr2 : 4518384 .. 4520603 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGAATTTGGGTGTGTGGTTGTTATGTGGACAGGGAGGAGGCAGCATCGGTGTGATATTTTGGGGGTGGTGGTATTTCCACGGATCATTGGGGATAAGTATTGAAGGGTAAGTTTGGAAATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGGTTTCTGATTTTGATAAATTATTTATATATCTCATTTCTGATATGTAGGCTGGGGAAGAATCTGCAGATGTGTTTTCTTTTTGTTATGCAGTAATGTTATTTTTTAATCCATCTTTGGCTGTGCAGCTACACCCCATCCCCCCATTTTTTGGGGTATATTTCATTCATTCAACAATTATTATCTCGTGCCTTCTCAATACACAAACAGATACATGAAACACTCAGACATGGTCATGGAGTCTTATGTTTTAAAGGAATTATGTAGCCATTGCAATATTGTGCTTTGCTGGTTTTGCATGTTTTGTGATTGATGAGCTTGTCAAATCTCTGCATTACCATGATTGAGCAGACATGGAAGTCTCCTGCACCGCTGCAATACATATAATATCCTTGTTATCTACTAATTGGACTGTAATAGTATTTGATGCTGATGTTTCTGGTTTTTGGACATGATCATATATTGGCATGAAAGGAATGTCATTGTTCTATCATCATATGGGTTTGTCATTTATTGTGTAAGATCTCAAGGGTGGAGTTCATAATGCAATTTTGGTGTGCATAAGATTGTAAATTGCTTTCTTCATAGATTCTCCCTGTTCCTGTTGTGAGCTGGTGGGAAAAGCTGAAAACTCGGGGGTATTTTGTTGATGAAGTTCAGAGTGTAGGATTGGTTAGTTTGAGTAATTGGGGCCAATGTAAATGGGAAAACTTACGTTTGAGTTATTTACCCTCTATAACTATTAAAAAAAAAGTTTGGGGGTGTTGCTATTGCATTGGGACTAGATAACTCGTGGATGAATCTTTTTTTTATTATTATTATTTTATTTCTATGTATATCTTCCGTTTTTTTCCTTGCATAGCATTGAGCTGCTAATCTTAATCTGATTTTATTGCCAGTCGAGACAATCTTTGCAAGAACTGTAAGCGGCCTGGCCATTTTGCAAGAGAATGCCCGAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGTAAGGACACTTGATCTTGTGCTTGTTGCCTTTGTCGCCTATTTGGTCACAGAAGTTTATTGGGAGAAATGCTCGTTTTTTATTTACCTAAATATTCACCTTTCTACTTATTTCTGGCATTTCAAGAAGAGGCTTGTTATTTTCCATTCTACTTGACATGAAAATTACGGATTTGGTTCTATACTATCATGTCATTAGCTAGGAGTATTCAGTGTTTGTAGTTGACTTAGAAGCATACTATTTGCCAAACATTTAGAATTTGAGATCTGGAGTTAAAGGTATATTGTAAATTTGTAAGATGCTAGGGAATCTGATCATAATTGCATATTTGGCATACACTTGTTTGAACAATGATCCCTTTTTACTCTTATGGCTTAGTTTTCAATGGATAAATTCATGATACTGCATCTACTAGGCATATTGCTTCAGAGTGCACAACAAAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACCTGTGGCAAGGCGGGACATCGGGCCAGGGATTGCACGGCGCCTCCGCTGCCACCTGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCATGCAACAATTGCAGGAAGACGGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAATGTCCTTGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGTAGTGTACGTGGTGGTGGTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGTGGTCACCTGGCATACGAATGTCCTTCTGGTCGGTTTATGGACCGTTATCCTAGGAGGTACTGA

mRNA sequence

ATGGATATGAATTTGGGTGTGTGGTTGTTATGTGGACAGGGAGGAGGCAGCATCGGTGTGATATTTTGGGGGTGGTGGTATTTCCACGGATCATTGGGGATAAGTATTGAAGGTCGAGACAATCTTTGCAAGAACTGTAAGCGGCCTGGCCATTTTGCAAGAGAATGCCCGAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCAGAGTGCACAACAAAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACCTGTGGCAAGGCGGGACATCGGGCCAGGGATTGCACGGCGCCTCCGCTGCCACCTGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCATGCAACAATTGCAGGAAGACGGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAATGTCCTTGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGTAGTGTACGTGGTGGTGGTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGTGGTCACCTGGCATACGAATGTCCTTCTGGTCGGTTTATGGACCGTTATCCTAGGAGGTACTGA

Coding sequence (CDS)

ATGGATATGAATTTGGGTGTGTGGTTGTTATGTGGACAGGGAGGAGGCAGCATCGGTGTGATATTTTGGGGGTGGTGGTATTTCCACGGATCATTGGGGATAAGTATTGAAGGTCGAGACAATCTTTGCAAGAACTGTAAGCGGCCTGGCCATTTTGCAAGAGAATGCCCGAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCAGAGTGCACAACAAAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACCTGTGGCAAGGCGGGACATCGGGCCAGGGATTGCACGGCGCCTCCGCTGCCACCTGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCATGCAACAATTGCAGGAAGACGGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAATGTCCTTGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGTAGTGTACGTGGTGGTGGTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGTGGTCACCTGGCATACGAATGTCCTTCTGGTCGGTTTATGGACCGTTATCCTAGGAGGTACTGA

Protein sequence

MDMNLGVWLLCGQGGGSIGVIFWGWWYFHGSLGISIEGRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Homology
[Close]
BLAST of Cla015888 vs. Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-29
Identity = 78/243 (32.10%), Postives = 105/243 (43.21%), Query Frame = 1 

Query: 43  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCRE 102
           C+NC + GH+ARECP            C  CG  GH++ EC  ++         C+ C E
Sbjct: 18  CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77

Query: 103 PGHMASSCPNEGI--------CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAAD 162
            GHM+  CPN           C+ CG+ GH +RDC   P   G  R      K+G   A 
Sbjct: 78  AGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC---PSSQGGSR-GGYGQKRGRSGAQ 137

Query: 163 --CTNEKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNVLGDRG 222
              + ++ C  C   GH++RDCPN         D  C  C  +GH++R CP         
Sbjct: 138 GGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNG------- 197

Query: 223 DRGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDCMGP------LMICHNCGGRGHLAY 245
                      +GG SG  D  C  C + GHMSR+C            C+ CG  GH++ 
Sbjct: 198 -----------QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISR 238


HSP 2 Score: 118.6 bits (296), Expect = 9.8e-26
Identity = 75/252 (29.76%), Postives = 102/252 (40.48%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVA--------ICHNCGLPGHIASECTTKSL--------CW 98
           R   C  C   GH +RECPN A         C  CG  GH++ +C   +         C+
Sbjct: 41  RSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECY 100

Query: 99  NCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTN- 158
            C + GH++  CP+       G    R R   A     GD R C  C   GHI+ DC N 
Sbjct: 101 KCGQEGHLSRDCPSSQGGSRGGYGQKRGRS-GAQGGYSGD-RTCYKCGDAGHISRDCPNG 160

Query: 159 --------EKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNVLG 218
                   ++ C  C   GH++RDCPN         D  C  C  SGH++R+CP +    
Sbjct: 161 QGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA---- 220

Query: 219 DRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDCM-----------GPLMICHNC 246
                           G +G  D  C  C + GH+SR+C            G    C+ C
Sbjct: 221 ----------------GSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKC 270


HSP 3 Score: 32.0 bits (71), Expect = 1.2e+01
Identity = 13/29 (44.83%), Postives = 14/29 (48.28%), Query Frame = 1 

Query: 30  GSLGISIEGRDNLCKNCKRPGHFARECPN 59
           GS G S  G D  C  C   GH +R+CP+
Sbjct: 242 GSYGGSRGGGDRTCYKCGEAGHISRDCPS 270

[Close]
BLAST of Cla015888 vs. Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-26
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 1 

Query: 43  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSL-----CWNCREPGHMASSCPNE 102
           C  C + GH A +C +  +C+NC  PGH+ ++CT         C+NC E GH+ S C  +
Sbjct: 6   CYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ 65

Query: 103 GICHTCGKAGHRARDCTAPPLPPGDLRL-CNNCYKQGHIAADCTNEKA-----CNNCRKT 162
             C  C + GH +R+C  P       ++ C  C    H+A DC  E       C  C + 
Sbjct: 66  R-CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQA 125

Query: 163 GHLARDCPNDPICNLCNVSGHVARQCPKS 181
           GH++RDC ND +C  CN +GH+++ CPK+
Sbjct: 126 GHMSRDCQNDRLCYNCNETGHISKDCPKA 153


HSP 2 Score: 115.5 bits (288), Expect = 8.3e-25
Identity = 56/176 (31.82%), Postives = 85/176 (48.30%), Query Frame = 1 

Query: 77  TKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIA 136
           ++  C+ C + GH+A  C +E +C+ C K GH   DCT P     + + C NC + GH+ 
Sbjct: 2   SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV--EFKQCYNCGETGHVR 61

Query: 137 ADCTNEKACNNCRKTGHLARDCP--------NDPICNLCNVSGHVARQCPKSNVLGDRGD 196
           ++CT ++ C NC +TGH++R+CP        +   C  C    H+A+ C K +       
Sbjct: 62  SECTVQR-CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKED------- 121

Query: 197 RGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECP 245
                          G   + C  C Q GHMSRDC     +C+NC   GH++ +CP
Sbjct: 122 ---------------GISGLKCYTCGQAGHMSRDCQND-RLCYNCNETGHISKDCP 151


HSP 3 Score: 30.0 bits (66), Expect = 4.6e+01
Identity = 9/18 (50.00%), Postives = 10/18 (55.56%), Query Frame = 1 

Query: 40  DNLCKNCKRPGHFARECP 58
           D LC NC   GH +++CP
Sbjct: 134 DRLCYNCNETGHISKDCP 151

[Close]
BLAST of Cla015888 vs. Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-21
Identity = 68/211 (32.23%), Postives = 90/211 (42.65%), Query Frame = 1 

Query: 41  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGIC 100
           N C  C R GH+ARECP   I    G+     +                M+SS P+  IC
Sbjct: 4   NECFKCGRTGHWARECPT-GIGRGRGMRSRGRAGFQ------------FMSSSLPD--IC 63

Query: 101 HTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCT-----NEKACNNCRKTGHLA 160
           + CG++GH A+DC        + + C NC + GHIA DC       E+ C NC K GHLA
Sbjct: 64  YRCGESGHLAKDCDLQ-----EDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 123

Query: 161 RDC--PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNC 220
           RDC   ++  C  C   GH+ + C K                            V C  C
Sbjct: 124 RDCDHADEQKCYSCGEFGHIQKDCTK----------------------------VKCYRC 166

Query: 221 QQLGHMSRDCMGPLMI-CHNCGGRGHLAYEC 244
            + GH++ +C     + C+ CG  GHLA EC
Sbjct: 184 GETGHVAINCSKTSEVNCYRCGESGHLAREC 166

[Close]
BLAST of Cla015888 vs. Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20
Identity = 65/195 (33.33%), Postives = 82/195 (42.05%), Query Frame = 1 

Query: 62  CHNCGLPGHIASECTT---KSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPL 121
           C  CG  GH A EC T   +      R  G    S     IC+ CG++GH A+DC     
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC----- 65

Query: 122 PPGDLR--LCNNCYKQGHIAADCT-----NEKACNNCRKTGHLARDC--PNDPICNLCNV 181
              DL+   C NC + GHIA DC       E+ C NC K GHLARDC   ++  C  C  
Sbjct: 66  ---DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGE 125

Query: 182 SGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDCMGPLMI 241
            GH+ + C K                            V C  C + GH++ +C     +
Sbjct: 126 FGHIQKDCTK----------------------------VKCYRCGETGHVAINCSKTSEV 164

Query: 242 -CHNCGGRGHLAYEC 244
            C+ CG  GHLA EC
Sbjct: 186 NCYRCGESGHLAREC 164


HSP 2 Score: 79.0 bits (193), Expect = 8.6e-14
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNV--AICHNCGLPGHIASECTTKSLCWNCREPGHMASSCP- 98
           R+  C NC +PGH AR+C +     C++CG  GHI  +CT K  C+ C E GH+A +C  
Sbjct: 87  REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSK 146

Query: 99  -NEGICHTCGKAGHRARDCT 115
            +E  C+ CG++GH AR+CT
Sbjct: 147 TSEVNCYRCGESGHLARECT 165

[Close]
BLAST of Cla015888 vs. Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-20
Identity = 70/219 (31.96%), Postives = 87/219 (39.73%), Query Frame = 1 

Query: 43  CKNCKRPGHFARECP-------------NVAICHNCGLPGHIASECTTKSLCWNCREPGH 102
           C NC   GH +++C                  C+NCG  GH A +CT+     N  + G 
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAG---NGDQRG- 161

Query: 103 MASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLR--------LCNNCYKQGHIAADCTN 162
            A+   N+G C+TCG  GH ARDCT   +  GD R         C  C   GH A DCT 
Sbjct: 162 -ATKGGNDG-CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQ 221

Query: 163 EKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNVLG 222
           + A             C +C   GH+ARDC         C  C  SGH+AR C +     
Sbjct: 222 KVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ----- 281

Query: 223 DRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDC 224
                         RG G G  D  C  C + GH +R+C
Sbjct: 282 --------------RGSGGGGNDNACYKCGKEGHFAREC 295


HSP 2 Score: 97.1 bits (240), Expect = 3.1e-19
Identity = 77/224 (34.38%), Postives = 102/224 (45.54%), Query Frame = 1 

Query: 31  SLGISIEGRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHM 90
           ++ ++  G  +L K     G+ AR     + C+NCG  GHI+ +C            G  
Sbjct: 71  AVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGG-----GGGGGE 130

Query: 91  ASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLR--------LCNNCYKQGHIAADCTNE 150
             S   EG C+ CG  GH ARDCT+     GD R         C  C   GH+A DCT +
Sbjct: 131 RRSRGGEG-CYNCGDTGHFARDCTS--AGNGDQRGATKGGNDGCYTCGDVGHVARDCT-Q 190

Query: 151 KACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGG 210
           K+  N  + G  A    ND  C  C   GH AR C +    G+     + SG     GGG
Sbjct: 191 KSVGNGDQRG--AVKGGNDG-CYTCGDVGHFARDCTQKVAAGN-----VRSG-----GGG 250

Query: 211 SGYRDVVCRNCQQLGHMSRDC---MGPLMICHNCGGRGHLAYEC 244
           SG     C +C  +GH++RDC     P   C+ CGG GHLA +C
Sbjct: 251 SG----TCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268


HSP 3 Score: 93.6 bits (231), Expect = 3.4e-18
Identity = 72/230 (31.30%), Postives = 90/230 (39.13%), Query Frame = 1 

Query: 11  CGQGGGSIGVIFWGWWYFHGSLGISIEGRDNLCKNCKRPGHFARECPNVAI--------- 70
           CG GGG  G    G     G  G         C NC   GHFAR+C +            
Sbjct: 115 CGIGGGGGG----GERRSRGGEG---------CYNCGDTGHFARDCTSAGNGDQRGATKG 174

Query: 71  ----CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPP 130
               C+ CG  GH+A +CT KS+  N  + G +     N+G C+TCG  GH ARDCT   
Sbjct: 175 GNDGCYTCGDVGHVARDCTQKSV-GNGDQRGAVKGG--NDG-CYTCGDVGHFARDCTQK- 234

Query: 131 LPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPN----DPICNLCNVSGHV 190
                          G++ +       C +C   GH+ARDC         C  C  SGH+
Sbjct: 235 ------------VAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHL 294

Query: 191 ARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDC 224
           AR C +            GSGGG          D  C  C + GH +R+C
Sbjct: 295 ARDCDQR-----------GSGGGG--------NDNACYKCGKEGHFAREC 295


HSP 4 Score: 36.6 bits (83), Expect = 4.9e-01
Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 1 

Query: 38  GRDNLCKNCKRPGHFARECPNVA 61
           G DN C  C + GHFAREC +VA
Sbjct: 277 GNDNACYKCGKEGHFARECSSVA 299

[Close]
BLAST of Cla015888 vs. TrEMBL
Match: A0A0A0K138_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006230 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 8.1e-136
Identity = 213/218 (97.71%), Postives = 215/218 (98.62%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG
Sbjct: 43  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 102

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC
Sbjct: 103 ICHTCGKAGHRARDCTAPPMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 162

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGI SGGGS RG GSGYRDVVCRNCQQLGH
Sbjct: 163 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGH 222

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDR+PRRY
Sbjct: 223 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRFPRRY 260

[Close]
BLAST of Cla015888 vs. TrEMBL
Match: K7KSE0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G008500 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 5.6e-129
Identity = 202/218 (92.66%), Postives = 210/218 (96.33%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNC+EPGHMASSCPNEG
Sbjct: 43  RDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEG 102

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRAR+C+APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDC
Sbjct: 103 ICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDC 162

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PNDPICNLCNVSGHVARQCPK+NVLGDR   G G GGG+  GGG GYRDVVCRNCQQLGH
Sbjct: 163 PNDPICNLCNVSGHVARQCPKANVLGDRSGGG-GGGGGARGGGGGGYRDVVCRNCQQLGH 222

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 223 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 259

[Close]
BLAST of Cla015888 vs. TrEMBL
Match: V7AQT1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G003600g PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 9.6e-129
Identity = 201/220 (91.36%), Postives = 211/220 (95.91%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNC+EPGHMAS+CPNEG
Sbjct: 43  RDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEG 102

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRAR+CTAPP+PPGDLRLCNNCYKQGHIAA+CTN+KACNNCRKTGHLARDC
Sbjct: 103 ICHTCGKAGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNDKACNNCRKTGHLARDC 162

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDR--GDRGIGSGGGSVRGGGSGYRDVVCRNCQQL 218
           PNDPICNLCNVSGHVARQCPK+NVLGDR  G  G G GGG+  GGG GYRDV+CRNCQQL
Sbjct: 163 PNDPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGGGGARGGGGGGYRDVICRNCQQL 222

Query: 219 GHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           GHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 223 GHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 262

[Close]
BLAST of Cla015888 vs. TrEMBL
Match: A0A0B2RNJ1_GLYSO (DNA-binding protein HEXBP OS=Glycine soja GN=glysoja_013724 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 2.8e-128
Identity = 201/218 (92.20%), Postives = 209/218 (95.87%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNC+EPGHMASSCPNEG
Sbjct: 41  RDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEG 100

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRAR+C+APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDC
Sbjct: 101 ICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDC 160

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PNDPICNLCNVSGHVARQCPK+NVLGDR     G GGG+  GGG GYRDVVCRNCQQLGH
Sbjct: 161 PNDPICNLCNVSGHVARQCPKANVLGDRS----GGGGGARGGGGGGYRDVVCRNCQQLGH 220

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 221 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 254

[Close]
BLAST of Cla015888 vs. TrEMBL
Match: K7KHH1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G008700 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 2.8e-128
Identity = 201/218 (92.20%), Postives = 209/218 (95.87%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNC+EPGHMASSCPNEG
Sbjct: 41  RDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEG 100

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRAR+C+APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDC
Sbjct: 101 ICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDC 160

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PNDPICNLCNVSGHVARQCPK+NVLGDR     G GGG+  GGG GYRDVVCRNCQQLGH
Sbjct: 161 PNDPICNLCNVSGHVARQCPKANVLGDRS----GGGGGARGGGGGGYRDVVCRNCQQLGH 220

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 221 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 254

[Close]
BLAST of Cla015888 vs. NCBI nr
Match: gi|659094428|ref|XP_008448055.1| (PREDICTED: zinc finger protein GIS2 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 2.3e-136
Identity = 215/218 (98.62%), Postives = 215/218 (98.62%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG
Sbjct: 43  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 102

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC
Sbjct: 103 ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 162

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGI SGGGS RG GSGYRDVVCRNCQQLGH
Sbjct: 163 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGH 222

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 223 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 260

[Close]
BLAST of Cla015888 vs. NCBI nr
Match: gi|449461615|ref|XP_004148537.1| (PREDICTED: zinc finger protein GIS2 [Cucumis sativus])

HSP 1 Score: 491.1 bits (1263), Expect = 1.2e-135
Identity = 213/218 (97.71%), Postives = 215/218 (98.62%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG
Sbjct: 43  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 102

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC
Sbjct: 103 ICHTCGKAGHRARDCTAPPMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 162

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGI SGGGS RG GSGYRDVVCRNCQQLGH
Sbjct: 163 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGH 222

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDR+PRRY
Sbjct: 223 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRFPRRY 260

[Close]
BLAST of Cla015888 vs. NCBI nr
Match: gi|356516892|ref|XP_003527126.1| (PREDICTED: zinc finger protein GIS2-like [Glycine max])

HSP 1 Score: 468.4 bits (1204), Expect = 8.1e-129
Identity = 202/218 (92.66%), Postives = 210/218 (96.33%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNC+EPGHMASSCPNEG
Sbjct: 43  RDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEG 102

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRAR+C+APP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDC
Sbjct: 103 ICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDC 162

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PNDPICNLCNVSGHVARQCPK+NVLGDR   G G GGG+  GGG GYRDVVCRNCQQLGH
Sbjct: 163 PNDPICNLCNVSGHVARQCPKANVLGDRSGGG-GGGGGARGGGGGGYRDVVCRNCQQLGH 222

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 223 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 259

[Close]
BLAST of Cla015888 vs. NCBI nr
Match: gi|593267495|ref|XP_007135925.1| (hypothetical protein PHAVU_009G003600g [Phaseolus vulgaris])

HSP 1 Score: 467.6 bits (1202), Expect = 1.4e-128
Identity = 201/220 (91.36%), Postives = 211/220 (95.91%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNC+EPGHMAS+CPNEG
Sbjct: 43  RDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEG 102

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRAR+CTAPP+PPGDLRLCNNCYKQGHIAA+CTN+KACNNCRKTGHLARDC
Sbjct: 103 ICHTCGKAGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNDKACNNCRKTGHLARDC 162

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDR--GDRGIGSGGGSVRGGGSGYRDVVCRNCQQL 218
           PNDPICNLCNVSGHVARQCPK+NVLGDR  G  G G GGG+  GGG GYRDV+CRNCQQL
Sbjct: 163 PNDPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGGGGARGGGGGGYRDVICRNCQQL 222

Query: 219 GHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           GHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 223 GHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 262

[Close]
BLAST of Cla015888 vs. NCBI nr
Match: gi|657998366|ref|XP_008391584.1| (PREDICTED: zinc finger protein GIS2 [Malus domestica])

HSP 1 Score: 466.5 bits (1199), Expect = 3.1e-128
Identity = 201/218 (92.20%), Postives = 208/218 (95.41%), Query Frame = 1 

Query: 39  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEG 98
           RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMAS+CPNEG
Sbjct: 44  RDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEG 103

Query: 99  ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 158
           ICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC
Sbjct: 104 ICHTCGKAGHRARDCTAPPMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC 163

Query: 159 PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGH 218
           PN+PICNLCNVSGHVARQCP++N LG+RG  G G GGG + G G  YRDVVCRNCQQLGH
Sbjct: 164 PNEPICNLCNVSGHVARQCPRANALGERGGGG-GGGGGGMGGRGGSYRDVVCRNCQQLGH 223

Query: 219 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 257
           MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY
Sbjct: 224 MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 260

The following BLAST results are available for this feature:
BLAST of Cla015888 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HEXP_LEIMA1.5e-2932.10DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1[more]
GIS2_YEAST5.8e-2635.57Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... [more]
CNBP_CHICK9.5e-2132.23Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1[more]
CNBP_BOVIN1.6e-2033.33Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1[more]
CSP1_ARATH2.1e-2031.96Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1[more]
BLAST of Cla015888 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K138_CUCSA8.1e-13697.71Uncharacterized protein OS=Cucumis sativus GN=Csa_7G006230 PE=4 SV=1[more]
K7KSE0_SOYBN5.6e-12992.66Uncharacterized protein OS=Glycine max GN=GLYMA_06G008500 PE=4 SV=1[more]
V7AQT1_PHAVU9.6e-12991.36Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G003600g PE=4 SV=1[more]
A0A0B2RNJ1_GLYSO2.8e-12892.20DNA-binding protein HEXBP OS=Glycine soja GN=glysoja_013724 PE=4 SV=1[more]
K7KHH1_SOYBN2.8e-12892.20Uncharacterized protein OS=Glycine max GN=GLYMA_04G008700 PE=4 SV=1[more]
BLAST of Cla015888 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094428|ref|XP_008448055.1|2.3e-13698.62PREDICTED: zinc finger protein GIS2 [Cucumis melo][more]
gi|449461615|ref|XP_004148537.1|1.2e-13597.71PREDICTED: zinc finger protein GIS2 [Cucumis sativus][more]
gi|356516892|ref|XP_003527126.1|8.1e-12992.66PREDICTED: zinc finger protein GIS2-like [Glycine max][more]
gi|593267495|ref|XP_007135925.1|1.4e-12891.36hypothetical protein PHAVU_009G003600g [Phaseolus vulgaris][more]
gi|657998366|ref|XP_008391584.1|3.1e-12892.20PREDICTED: zinc finger protein GIS2 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016491 oxidoreductase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU08434watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU13719watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU36812watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015888Cla015888.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU13719WMU13719transcribed_cluster
WMU08434WMU08434transcribed_cluster
WMU36812WMU36812transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 40..69
score: 2.0E-10coord: 70..97
score: 6.5E-13coord: 134..152
score: 1.1E-13coord: 153..179
score: 1.0E-11coord: 208..245
score: 1.4E-11coord: 100..133
score: 1.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 144..160
score: 2.7E-6coord: 125..141
score: 0.0028coord: 99..114
score: 8.4E-6coord: 229..245
score: 1.8E-5coord: 209..223
score: 7.7E-7coord: 62..76
score: 2.5E-5coord: 163..179
score: 0.0015coord: 81..96
score: 7.6E-6coord: 42..58
score: 2.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 61..77
score: 0.0017coord: 209..225
score: 0.0056coord: 80..96
score: 1.8E-4coord: 42..58
score: 4.7E-4coord: 163..179
score: 0.02coord: 144..160
score: 1.4E-4coord: 99..115
score: 0.0015coord: 125..141
score: 0.0078coord: 229..245
score: 0
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 81..96
score: 9.916coord: 126..141
score: 8.796coord: 164..179
score: 8.614coord: 43..58
score: 9.85coord: 100..113
score: 10.114coord: 210..223
score: 9.142coord: 62..75
score: 9.504coord: 230..245
score: 9.834coord: 145..160
score: 10
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 121..161
score: 1.35E-11coord: 37..59
score: 3.92E-7coord: 201..247
score: 4.77E-12coord: 59..97
score: 1.13
NoneNo IPR availablePANTHERPTHR23002ZINC FINGER CCHC DOMAIN CONTAINING PROTEINcoord: 39..250
score: 3.6E
NoneNo IPR availablePANTHERPTHR23002:SF65SUBFAMILY NOT NAMEDcoord: 39..250
score: 3.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015888Cla97C02G031580Watermelon (97103) v2wmwmbB317
Cla015888Csa7G006230Cucumber (Chinese Long) v2cuwmB604
Cla015888MELO3C013423Melon (DHL92) v3.5.1mewmB239
Cla015888ClCG02G004610Watermelon (Charleston Gray)wcgwmB198
Cla015888CSPI07G00360Wild cucumber (PI 183967)cpiwmB622
Cla015888CmaCh11G010780Cucurbita maxima (Rimu)cmawmB123
Cla015888CmaCh19G006910Cucurbita maxima (Rimu)cmawmB503
Cla015888CmoCh19G007020Cucurbita moschata (Rifu)cmowmB496
Cla015888CmoCh11G010990Cucurbita moschata (Rifu)cmowmB111
Cla015888Lsi11G011310Bottle gourd (USVL1VR-Ls)lsiwmB104
Cla015888Cp4.1LG15g05600Cucurbita pepo (Zucchini)cpewmB268
Cla015888Cp4.1LG04g01040Cucurbita pepo (Zucchini)cpewmB667
Cla015888CsGy7G000300Cucumber (Gy14) v2cgybwmB566
Cla015888MELO3C013423.2Melon (DHL92) v3.6.1medwmB231
Cla015888CsaV3_7G000350Cucumber (Chinese Long) v3cucwmB634
Cla015888Bhi05G001132Wax gourdwgowmB278
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015888Bottle gourd (USVL1VR-Ls)lsiwmB079
Cla015888Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015888Bottle gourd (USVL1VR-Ls)lsiwmB493
Cla015888Cucumber (Gy14) v2cgybwmB141
Cla015888Cucumber (Gy14) v2cgybwmB144
Cla015888Melon (DHL92) v3.6.1medwmB124
Cla015888Melon (DHL92) v3.6.1medwmB324
Cla015888Silver-seed gourdcarwmB0305
Cla015888Silver-seed gourdcarwmB0985
Cla015888Cucumber (Chinese Long) v3cucwmB160
Cla015888Cucumber (Chinese Long) v3cucwmB163
Cla015888Watermelon (97103) v2wmwmbB315
Cla015888Watermelon (97103) v2wmwmbB349
Cla015888Wax gourdwgowmB272
Cla015888Wax gourdwgowmB343
Cla015888Wax gourdwgowmB383
Cla015888Watermelon (97103) v1wmwmB073
Cla015888Watermelon (97103) v1wmwmB160
Cla015888Cucumber (Gy14) v1cgywmB155
Cla015888Cucumber (Gy14) v1cgywmB296
Cla015888Cucumber (Gy14) v1cgywmB679
Cla015888Cucurbita maxima (Rimu)cmawmB526
Cla015888Cucurbita maxima (Rimu)cmawmB586
Cla015888Cucurbita moschata (Rifu)cmowmB158
Cla015888Cucurbita moschata (Rifu)cmowmB516
Cla015888Cucurbita moschata (Rifu)cmowmB580
Cla015888Melon (DHL92) v3.5.1mewmB129
Cla015888Melon (DHL92) v3.5.1mewmB327
Cla015888Watermelon (Charleston Gray)wcgwmB101
Cla015888Watermelon (Charleston Gray)wcgwmB422
Cla015888Cucumber (Chinese Long) v2cuwmB149
Cla015888Cucumber (Chinese Long) v2cuwmB153
Cla015888Cucurbita pepo (Zucchini)cpewmB115
Cla015888Cucurbita pepo (Zucchini)cpewmB304
Cla015888Cucurbita pepo (Zucchini)cpewmB748
Cla015888Cucurbita pepo (Zucchini)cpewmB808