CmoCh19G005720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G005720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	40S ribosomal protein S29
Location	Cmo_Chr19 : 6544643 .. 6547977 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTCAATTATTTTCGGTACCCGCTAGGGTTTCGTCTCTGATCGCCGCTATAAATACTTACTTTTCCTACTAACGATAGTTCGTCAGAAGGATTTTGCCGCTTCTTGGAATTTTTGAAGCCCTAACGAGCTCAACAGGTTTCCGTCTCGTAGGCGATTCAATCATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCTCGCACCTGGTAACTTGTTTTCCTTTTCTCTGTTTCTCTTTTGAGATGATTTCGATTTGATTTAGTTGATTTTTTCTTATCTGCTGCATCCGAATTCTTCTTTTTCTCGAAGAACGTGGTTAATTATTTGGATTACAGAGTGGAATTCGGATGTTTTGTTAATCTGATGGGGTATTTTGACTTGAGAGATGAATTATGTGATTGGTTTTTACTTTTGAGTTGGACACAGCTTGAAGTAGTAATAGTTGGAAACAAGCACAAGGACTGATTTATCTCTATACGTTCGTGCTGAAAAATATTTGTGTCGACTATAATTTGTGCCATGGTGGGCAATTAAGTGAAGTTATTGTAGAATAGTTCCCAAATGTTCTTCTATCTATTTGTACTGTCTGGTTAAATTGATTAGGCATGAGAACTTGTCTCGATTCTGGTTATGTCCATGGTCAAATCATTTTATGTGTAGGTTATTCTGGGTCATAGTTTTAATGTTGATGAAACGGTAAGGAGTTCTTAGTATTTGCTCACTTAAGCTGTCTGTGACTATTGGATGAACTAGACGGTAAGTACAGTTGGATAATGGGATGAATAAAATGATAGATAAGATGCTCCATAGGTTTCCATGATTGAGATTTAGAAATTTTGGATACATAGATACACTTGGTTGGGTTAACATTTATTTATAACAATGATATGAAGGAAAGGGTTAACATCTAATGTTGGGTTAAAATTTATTCAGAACAATGATATGAACTAAAAGGTAACAATGACTGAAAGGATTAATAAGATGCTGCATAGGTTTCCATGATTGAGAGTTATAAATTTTGGATACATAGAAACATTTGATTGGGTTTACATTTATTCAGAACAATGATATGAAGGTATCTTTTGTTTGAATTAAAATGTGGTCTCTATTTGTCTTGTCTTTCAGCCGGGTGTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTAAAAATTTTACATTCTTGTTTATTTTGAAGTAAATTCATATCAAGACTTTTTCAATGTCTTCTGACCCTGTTGAACCCCTCAACTCTTCTTGCAGTACCGCTAAATGGCGAAATTTTGCCTCTCCTGCCTCTCCCATTAGAGAATGTTTAATGGATAGAATATGGTTGCTGGATTTGCTTATATAAAAGAAAGAACTTTGAACTTCTGTCCCTAGTTCATTATTTCCTTGAACGTCGTGTTGATTGTTGAACTTAGGCTACCACAATGCTGACTAATTTTGAAGATTAAGTTAGTGTGTTTCATTTGTCTGAGTATTCTTGTTTTCCTCTCGTTCCTTCCTCTTTCCCCCCTAATGGTATTTGCTTTATAAAATGTGCGGATTAGAGTTGAAATCGAGTTGACCATCATAGTTTGGTCTAGCGGGAAATGGTCCATCTACCTTAAAGGACTTAGAAGAAATGAATTAAGGTCTCATGGTTACTATCTATTTGGGATTTAATATCATATACGGTTTCACTTTTATATGTACGGATTAAAGTAGAAATCGAGTTAAACCATCTCATGGTTTGGTCTAGCGGAAAAGGGTCTATCAGGTAGAAATGAATTCAAGTCATGGTCACTATGTATTTAGGTCTATTTAGGATTTAATATCATATAAGGTTTGGTCCTAATGGTATCACTTTATAAATGTACAGACTAAAGTAGAAATCGAGTTAACCATCATGGTTTGGTCTTAAGTGGAAAAGGGTCCATCTACCTGAATTTAAGTCATGGTCACTATCTATTTAGGATTTAATATTGCATAAGGTATAGCTAATGCATTGACCGAACATGTATGAAGTATAGACCTAGCCACACTACTACTGATTGGTGTGACTTCTATGATGGTACTCCAAATGGGGTCCTCCCCATTAGGCATTAATGCATGCTAAATTCAGTCTGAAACATGGTCTGGTCTGAACATATTAATTATGTTCTTGTTACTGGTAATTTGTGCATAGTTTTTAGTGATCTGTGGACCATTTATCAATTGCTTGGGCTCACCAGGGGACAGTCAACAATTTTGAAGGCTTGAAGATTCGTTCTTCGGACACTTTGTAGACCAGGCCCCTTTTCTTTTCCTCATAGCTTTGGTGAAATATTTATTTTTGTCTTGCAAATTTAAATGATTTGATTATGATATCTATAAAAGTTCATTGAATTTAAATAATAATGTAGGTAGAGGTGGATATAGGTTTTGAGATTTTAGTTCTGACTTTATGAATGAAATACTTCTGAGCAATAAATTTTCAGGAGGTTAAATGGATTTGTCAAGTGAATTTAGGGGTTGGTTGGTGACTCCGAGCAATTTGAGTAAGCTGTTGTTGTTGCCTTTTGCTTACATTTCCTTATAACACCAACTTTAGTTTTTCAAATCTTGCTTTCAAAATTCTGCCCCGTTTTCTAAAACTTTGTTCTTGAACTGGGGCTAAACGCTCAAGCATACGTCACTTGGCTATAGGCGATGCAAGAGCGAATAGACTTAACTCACTTGTTGTTGGAAATTGAGTGGCGCACAATCGCAAGTTTGCTGTCGTTGCTTGGCCGTAGACGACGCAAGAACGAATAGGCTTAACTCACTTGTTGTTGGAAATTGAGTGGCGCACAATCGCAAGTTTGCTGTCGTTGCTTGGCCGTAGGCGACGCAAGAACGAATAGGTTTAACTCACTTGTTGCTGGAAATTGAGTGTTGCACAATCGCAAGTTTGCTGCCGTTGCTTGGCCGTAGGCGACCTAAGAACCAATAGGCTTAACTCATTTGTTGCTGGAAAGTGAGTGCCGCACAATTGTAAGTTCGCTGCTGTCAAAGTGCGATTGTGATAAGTTCGCTGCCGTCAAAGTGCGATTGTCAAAATGCGATTGTGATAAGTGGTATCATTCTTCTCAAATCTTCATTATTTTTTTTTTATAAAAAAAGGTTTATCCACATCACATGTTACTTTAGTAACTAAAATCTCGGAAGTTTTAAATATAAGTCTCAGTATCAGTTACAAATATTACATATTCTTAATCTTTTTGAACGTAGAATCGGGTACGGTTACAAGTAA

mRNA sequence

ATATTCAATTATTTTCGGTACCCGCTAGGGTTTCGTCTCTGATCGCCGCTATAAATACTTACTTTTCCTACTAACGATAGTTCGTCAGAAGGATTTTGCCGCTTCTTGGAATTTTTGAAGCCCTAACGAGCTCAACAGGTTTCCGTCTCGTAGGCGATTCAATCATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCTCGCACCTGTTTTAATGTTGATGAAACGCCGGGTGTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTAAAAATTTTACATTCTTGTTTATTTTGAAAATCGGGTACGGTTACAAGTAA

Coding sequence (CDS)

ATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCTCGCACCTGTTTTAATGTTGATGAAACGCCGGGTGTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTAAAAATTTTACATTCTTGTTTATTTTGAAAATCGGGTACGGTTACAAGTAA

Homology

[Close]

BLAST of CmoCh19G005720 vs. TrEMBL
Match: A0A0E0RHR1_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTCF---NVDE--------------TPGVRKSSWVDQKVRPY 60
          MGHSNVWNSHPK+YGPGSR CF   ++ E              +PGVR+ SW DQ+VR +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELEYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

[Close]

BLAST of CmoCh19G005720 vs. TrEMBL
Match: A3CHR1_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36239 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTCF---NVDE--------------TPGVRKSSWVDQKVRPY 60
          MGHSNVWNSHPK+YGPGSR CF   ++ E              +PGVR+ SW DQ+VR +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

[Close]

BLAST of CmoCh19G005720 vs. TrEMBL
Match: A0A0E0JAX2_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTCF---NVDE--------------TPGVRKSSWVDQKVRPY 60
          MGHSNVWNSHPK+YGPGSR CF    + E              +PGVR+ SW DQ+VR +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSRISELEYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

[Close]

BLAST of CmoCh19G005720 vs. TrEMBL
Match: A0A0B2RF08_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033170 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-16
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTCF--NVDETPGVRKSSWVDQKVRPYVLQTVLPQQRQGNWI 60
          MGHSNVWNSHPK+YGPGSRT +  ++ + P V +SSW+DQ++  YVLQ VLP+Q QGNW+
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTHLRQMPCVWESSWIDQEIWAYVLQAVLPKQCQGNWL 60

[Close]

BLAST of CmoCh19G005720 vs. TrEMBL
Match: A0A0D9V489_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 24 VDETPGVRKSSWVDQKVRPYVLQTVLPQQRQGNWIHQ 61
          +   PGVR+ SW DQ+VR +VLQ VLPQQRQG+W+HQ
Sbjct: 54 IPRLPGVREPSWADQEVRAHVLQAVLPQQRQGHWLHQ 90

[Close]

BLAST of CmoCh19G005720 vs. TAIR10
Match: AT3G43980.1 (AT3G43980.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of CmoCh19G005720 vs. TAIR10
Match: AT3G44010.1 (AT3G44010.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of CmoCh19G005720 vs. TAIR10
Match: AT4G33865.1 (AT4G33865.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of CmoCh19G005720 vs. NCBI nr
Match: gi|125579478|gb|EAZ20624.1| (hypothetical protein OsJ_36239 [Oryza sativa Japonica Group])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTCF---NVDE--------------TPGVRKSSWVDQKVRPY 60
          MGHSNVWNSHPK+YGPGSR CF   ++ E              +PGVR+ SW DQ+VR +
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

[Close]

BLAST of CmoCh19G005720 vs. NCBI nr
Match: gi|734398101|gb|KHN30432.1| (hypothetical protein glysoja_033170 [Glycine soja])

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-16
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 1  MGHSNVWNSHPKSYGPGSRTCF--NVDETPGVRKSSWVDQKVRPYVLQTVLPQQRQGNWI 60
          MGHSNVWNSHPK+YGPGSRT +  ++ + P V +SSW+DQ++  YVLQ VLP+Q QGNW+
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTHLRQMPCVWESSWIDQEIWAYVLQAVLPKQCQGNWL 60

[Close]

BLAST of CmoCh19G005720 vs. NCBI nr
Match: gi|473874939|gb|EMS47835.1| (hypothetical protein TRIUR3_23452 [Triticum urartu])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 1   MGHSNVWNSHPKSYGPGSRTCFNVDETPGVRKSSWVDQKVRPYVLQTVLPQQRQG----- 60
           +GHSNVWNSHP +YG GS  C        + + +W D +VR  VLQ V PQQR+      
Sbjct: 259 IGHSNVWNSHPNNYGSGSMPC--------LWQLTWPDPQVRADVLQAVFPQQRKDIGFIK 318

Query: 61  NWIHQGKNFTFLFILKIGY 75
            W++       LF+L I +
Sbjct: 319 VWVNYVSVLMHLFLLYISF 329

The following BLAST results are available for this feature:

BLAST of CmoCh19G005720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G005720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0RHR1_ORYRU	1.9e-16	58.44	Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1	[more]
A3CHR1_ORYSJ	1.9e-16	58.44	Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36239 PE=4 SV=1	[more]
A0A0E0JAX2_ORYNI	2.5e-16	58.44	Uncharacterized protein OS=Oryza nivara PE=4 SV=1	[more]
A0A0B2RF08_GLYSO	4.3e-16	64.52	Uncharacterized protein OS=Glycine soja GN=glysoja_033170 PE=4 SV=1	[more]
A0A0D9V489_9ORYZ	1.4e-06	64.86	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of CmoCh19G005720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43980.1	1.2e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	1.2e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	1.2e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]

BLAST of CmoCh19G005720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|125579478\|gb\|EAZ20624.1\|	2.8e-16	58.44	hypothetical protein OsJ_36239 [Oryza sativa Japonica Group]	[more]
gi\|734398101\|gb\|KHN30432.1\|	6.2e-16	64.52	hypothetical protein glysoja_033170 [Glycine soja]	[more]
gi\|473874939\|gb\|EMS47835.1\|	2.6e-06	40.51	hypothetical protein TRIUR3_23452 [Triticum urartu]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G005720.1	CmoCh19G005720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G005720	ClCG02G006720	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G005720	Lsi03G005680	Bottle gourd (USVL1VR-Ls)	cmolsiB468

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G005720	CmoCh11G014130	Cucurbita moschata (Rifu)	cmocmoB110

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G005720	Wax gourd	cmowgoB0642
CmoCh19G005720	Wax gourd	cmowgoB0659
CmoCh19G005720	Wax gourd	cmowgoB0670
CmoCh19G005720	Cucurbita moschata (Rifu)	cmocmoB395
CmoCh19G005720	Cucumber (Gy14) v1	cgycmoB0627
CmoCh19G005720	Cucurbita maxima (Rimu)	cmacmoB718
CmoCh19G005720	Cucurbita maxima (Rimu)	cmacmoB143
CmoCh19G005720	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G005720	Wild cucumber (PI 183967)	cmocpiB525
CmoCh19G005720	Cucumber (Chinese Long) v2	cmocuB519
CmoCh19G005720	Melon (DHL92) v3.5.1	cmomeB454
CmoCh19G005720	Watermelon (97103) v1	cmowmB496
CmoCh19G005720	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G005720	Cucurbita pepo (Zucchini)	cmocpeB494
CmoCh19G005720	Bottle gourd (USVL1VR-Ls)	cmolsiB469
CmoCh19G005720	Bottle gourd (USVL1VR-Ls)	cmolsiB482
CmoCh19G005720	Cucumber (Gy14) v2	cgybcmoB492
CmoCh19G005720	Cucumber (Gy14) v2	cgybcmoB928
CmoCh19G005720	Melon (DHL92) v3.6.1	cmomedB523
CmoCh19G005720	Melon (DHL92) v3.6.1	cmomedB526
CmoCh19G005720	Melon (DHL92) v3.6.1	cmomedB549
CmoCh19G005720	Silver-seed gourd	carcmoB0512
CmoCh19G005720	Silver-seed gourd	carcmoB0615
CmoCh19G005720	Cucumber (Chinese Long) v3	cmocucB0611
CmoCh19G005720	Cucumber (Chinese Long) v3	cmocucB0623
CmoCh19G005720	Watermelon (97103) v2	cmowmbB512
CmoCh19G005720	Watermelon (97103) v2	cmowmbB519