ClCG02G006720 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G006720
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	40S ribosomal protein S29, putative
Location	CG_Chr02 : 7721634 .. 7723381 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTTCCGTACACGCTAGGGTTTTGTCTCAGCACTCCACTATAAATACCTACTTTTTCTTCTAGTTGGTTCTTCAGAAAGCATTTGCCTATTCCAAGGATTTTCGAAGCCCTAACGAGCTCATCAGATTTCCTTCTCGCAAGAAATCCAAACATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGGTAACTTGCTTTCTTTTCTCCTTTTCTCTTTTCAGATGATTCCGATTTGATTTAACTGATCTTGTGATATACGATTCATTTTGCTCGAAAAAAATGGTATTTATTTCGATTACTGGGTTGGAACCCGGGGTTTTGTTAATCTGATGGGGTATTTTAACGTGAGAGAAAAATTATCTGATTGGTTTTGACTTTTGAGCTGGATACAGTTCAAAGAAGTATTTTTTTTTTCTCTTAATAATGTTTCTTTGATGTATGGAAAATCGCTTAAAGATAGATTTGGTGGCTATCTTCAATGGCGGGAAATTAAGTGAAATTTTCGGATAGTTCCCAAATGTTCTTCTAGTTATTTGTGATGTTTGTTGACATTGATTAGGCAATCGATTCTCGGTTCATTTGGCATGAGAATTTTAGTGGATTTGCCTAAGAACCCTTTTGGCTATATGCCCATGATCAGATCGTTTTCTGTCTAAGCTATTCTGGGAAATAGTTGTAATGGTGTTGAAACGGTAAGGTCCTAATAACTGCTCAGTAACCCCTTATGTTGTTTGTGGCTATTGGTTGAACTAAAATATAAGTTCATTATGTTGAGCCTGACTATTGGATGATGGGATGAATTGAGTGATTGATAAGATGCTGTATAAGTTTCCATGATCGGATCGTTTTTTGTCTAAATTATTCTGGGTCATAGTTGTTATGTTGATGAAACGATAAGAAGTTCTTAGTAATGGCTCATGAATCCCTTATGTTGTTTGTGGCTATTGGTTGAAATATAATACAAGTTCAGTATGTTGAGAATCGTGCTATGGATATTCAGTTGGATGATGAGATGAGTTAAAGGGTTGATAGGATGCTGTTTAAGCTTCCATGATTGAAATTAATGAAGTTTGTGATATATAAATACATTTGGATGGGTTAACATTTAATCAGAACTATGATATTAAGGCCTTTTTCTGCTTGAATTAAAACGTTCTCTGTTTTTCTTGCCTTGTCTTTTAGCCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTGAAAATATTACATTTTTATATATTTAACCATTGATTAATTTGAACTATATCCACATCAAAACTTTTTCAATGTCTTCTGAATTCTGACCTGTTGAACCTCAACTCTTCTTGCAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAGCAGGAACCTTCAACTTCCATTTTATGTCCCTAGTTCACTTTTTCCTTGAACCTTGAGTTGATTGTTGAACTTTAGGCTACTTCAATGTTTACTAATTTTGAAGATTTAAGTTAATGTTGTTCATTTGGTAGCTCGCTCTTAATTTTTTACCCCCTTTTCCTTAATTCTTTATCAGATGGTAACATCTCCTTATTTGATGTGTGGATTAAAGTATAGATTAAGTTAACCATCATGCTTATGCTTTGGCCGACG

mRNA sequence

ATTATTTCCGTACACGCTAGGGTTTTGTCTCAGCACTCCACTATAAATACCTACTTTTTCTTCTAGTTGGTTCTTCAGAAAGCATTTGCCTATTCCAAGGATTTTCGAAGCCCTAACGAGCTCATCAGATTTCCTTCTCGCAAGAAATCCAAACATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGTAATGGTGTTGAAACGCCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAGCAGGAACCTTCAACTTCCATTTTATGTCCCTAGTTCACTTTTTCCTTGAACCTTGAGTTGATTGTTGAACTTTAGGCTACTTCAATGTTTACTAATTTTGAAGATTTAAGTTAATGTTGTTCATTTGGTAGCTCGCTCTTAATTTTTTACCCCCTTTTCCTTAATTCTTTATCAGATGGTAACATCTCCTTATTTGATGTGTGGATTAAAGTATAGATTAAGTTAACCATCATGCTTATGCTTTGGCCGACG

Coding sequence (CDS)

ATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGTAATGGTGTTGAAACGCCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAG

Protein sequence

MGHSNVWNSHPKNYGPGSRTCCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSPIREEYVMDGLW

Homology

[Close]

BLAST of ClCG02G006720 vs. TrEMBL
Match: A3CHR1_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36239 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720 vs. TrEMBL
Match: A0A0E0RHR1_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELEYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720 vs. TrEMBL
Match: A0A0E0JAX2_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSRISELEYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720 vs. TrEMBL
Match: A0A0B2RF08_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033170 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.1e-15
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRT--CCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWI 60
          MGHSNVWNSHPKNYGPGSRT    +  + P + +SSW+DQ++  +VLQ VLP+Q QGNW+
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTHLRQMPCVWESSWIDQEIWAYVLQAVLPKQCQGNWL 60

Query: 61 HQV 62
          HQV
Sbjct: 61 HQV 63

[Close]

BLAST of ClCG02G006720 vs. TrEMBL
Match: A0A0E0J4L7_ORYNI (Uncharacterized protein (Fragment) OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.8e-08
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 28  PGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSPIREEYV 78
           PGLR+ SW DQ+V  HVLQ VLPQQRQG W+HQVPL   +   P  E+++
Sbjct: 53  PGLREPSWADQEVWAHVLQAVLPQQRQGYWLHQVPLKAILPRPPEPEKWI 102

[Close]

BLAST of ClCG02G006720 vs. TAIR10
Match: AT3G43980.1 (AT3G43980.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 19/21 (90.48%), Postives = 17/21 (80.95%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of ClCG02G006720 vs. TAIR10
Match: AT3G44010.1 (AT3G44010.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 19/21 (90.48%), Postives = 17/21 (80.95%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of ClCG02G006720 vs. TAIR10
Match: AT4G33865.1 (AT4G33865.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 19/21 (90.48%), Postives = 17/21 (80.95%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRTC 22
          MGHSNVWNSHPK YGPGSR C
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLC 21

[Close]

BLAST of ClCG02G006720 vs. NCBI nr
Match: gi|125579478|gb|EAZ20624.1| (hypothetical protein OsJ_36239 [Oryza sativa Japonica Group])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRTC--CNGVE---------------TPGLRKSSWVDQKVRTH 60
          MGHSNVWNSHPKNYGPGSR C  C+ +                +PG+R+ SW DQ+VR H
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCSPGVREPSWTDQEVRAH 60

Query: 61 VLQTVLPQQRQGNWIHQVPLNGQIFVSP 72
          VLQTVLPQQRQG+ +HQVPL    F  P
Sbjct: 61 VLQTVLPQQRQGHRLHQVPLKSSWFPQP 88

[Close]

BLAST of ClCG02G006720 vs. NCBI nr
Match: gi|734398101|gb|KHN30432.1| (hypothetical protein glysoja_033170 [Glycine soja])

HSP 1 Score: 88.2 bits (217), Expect = 7.3e-15
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MGHSNVWNSHPKNYGPGSRT--CCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWI 60
          MGHSNVWNSHPKNYGPGSRT    +  + P + +SSW+DQ++  +VLQ VLP+Q QGNW+
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTHLRQMPCVWESSWIDQEIWAYVLQAVLPKQCQGNWL 60

Query: 61 HQV 62
          HQV
Sbjct: 61 HQV 63

[Close]

BLAST of ClCG02G006720 vs. NCBI nr
Match: gi|473874939|gb|EMS47835.1| (hypothetical protein TRIUR3_23452 [Triticum urartu])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1


Query: 1   MGHSNVWNSHPKNYGPGSRTCCNGVETPGLRKSSWVDQKVRTHVLQTVLPQQRQG----- 60
           +GHSNVWNSHP NYG GS  C        L + +W D +VR  VLQ V PQQR+      
Sbjct: 259 IGHSNVWNSHPNNYGSGSMPC--------LWQLTWPDPQVRADVLQAVFPQQRKDIGFIK 318

Query: 61  NWIHQVPLNGQIFV 70
            W++ V +   +F+
Sbjct: 319 VWVNYVSVLMHLFL 324

The following BLAST results are available for this feature:

BLAST of ClCG02G006720 vs. TrEMBL


Match Name	E-value	Identity	Description
A3CHR1_ORYSJ	1.2e-19	56.82	Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36239 PE=4 SV=1	[more]
A0A0E0RHR1_ORYRU	1.2e-19	56.82	Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1	[more]
A0A0E0JAX2_ORYNI	2.0e-19	56.82	Uncharacterized protein OS=Oryza nivara PE=4 SV=1	[more]
A0A0B2RF08_GLYSO	5.1e-15	63.49	Uncharacterized protein OS=Glycine soja GN=glysoja_033170 PE=4 SV=1	[more]
A0A0E0J4L7_ORYNI	7.8e-08	58.00	Uncharacterized protein (Fragment) OS=Oryza nivara PE=4 SV=1	[more]

BLAST of ClCG02G006720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43980.1	1.0e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	1.0e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	1.0e-06	90.48	Ribosomal protein S14p/S29e family protein	[more]

BLAST of ClCG02G006720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|125579478\|gb\|EAZ20624.1\|	1.7e-19	56.82	hypothetical protein OsJ_36239 [Oryza sativa Japonica Group]	[more]
gi\|734398101\|gb\|KHN30432.1\|	7.3e-15	63.49	hypothetical protein glysoja_033170 [Glycine soja]	[more]
gi\|473874939\|gb\|EMS47835.1\|	1.2e-06	43.24	hypothetical protein TRIUR3_23452 [Triticum urartu]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G006720.1	ClCG02G006720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12010	40S RIBOSOMAL PROTEIN S29	coord: 1..21 score: 5.4
None	No IPR available	PANTHER	PTHR12010:SF6	40S RIBOSOMAL PROTEIN S29	coord: 1..21 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G006720	CmoCh11G014130	Cucurbita moschata (Rifu)	cmowcgB088
ClCG02G006720	CmoCh19G005720	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G006720	Lsi03G005680	Bottle gourd (USVL1VR-Ls)	lsiwcgB233

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G006720	Melon (DHL92) v3.6.1	medwcgB192
ClCG02G006720	Melon (DHL92) v3.6.1	medwcgB274
ClCG02G006720	Melon (DHL92) v3.6.1	medwcgB465
ClCG02G006720	Silver-seed gourd	carwcgB0288
ClCG02G006720	Silver-seed gourd	carwcgB0368
ClCG02G006720	Silver-seed gourd	carwcgB0445
ClCG02G006720	Cucumber (Chinese Long) v3	cucwcgB145
ClCG02G006720	Cucumber (Chinese Long) v3	cucwcgB308
ClCG02G006720	Cucumber (Chinese Long) v3	cucwcgB572
ClCG02G006720	Watermelon (97103) v2	wcgwmbB136
ClCG02G006720	Watermelon (97103) v2	wcgwmbB138
ClCG02G006720	Watermelon (97103) v2	wcgwmbB159
ClCG02G006720	Watermelon (97103) v2	wcgwmbB168
ClCG02G006720	Wax gourd	wcgwgoB259
ClCG02G006720	Wax gourd	wcgwgoB268
ClCG02G006720	Wax gourd	wcgwgoB281
ClCG02G006720	Watermelon (Charleston Gray)	wcgwcgB046
ClCG02G006720	Watermelon (Charleston Gray)	wcgwcgB139
ClCG02G006720	Cucumber (Gy14) v1	cgywcgB396
ClCG02G006720	Cucurbita maxima (Rimu)	cmawcgB101
ClCG02G006720	Cucurbita maxima (Rimu)	cmawcgB293
ClCG02G006720	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G006720	Cucurbita maxima (Rimu)	cmawcgB643
ClCG02G006720	Cucurbita moschata (Rifu)	cmowcgB645
ClCG02G006720	Wild cucumber (PI 183967)	cpiwcgB576
ClCG02G006720	Cucumber (Chinese Long) v2	cuwcgB133
ClCG02G006720	Cucumber (Chinese Long) v2	cuwcgB547
ClCG02G006720	Melon (DHL92) v3.5.1	mewcgB197
ClCG02G006720	Melon (DHL92) v3.5.1	mewcgB283
ClCG02G006720	Watermelon (97103) v1	wcgwmB176
ClCG02G006720	Watermelon (97103) v1	wcgwmB180
ClCG02G006720	Watermelon (97103) v1	wcgwmB198
ClCG02G006720	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G006720	Cucurbita pepo (Zucchini)	cpewcgB378
ClCG02G006720	Cucurbita pepo (Zucchini)	cpewcgB590
ClCG02G006720	Bottle gourd (USVL1VR-Ls)	lsiwcgB430
ClCG02G006720	Cucumber (Gy14) v2	cgybwcgB507