CmoCh11G014130 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G014130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description40S ribosomal protein S29
LocationCmo_Chr11 : 9922201 .. 9924199 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTTTCTTCTCAATGTCTCCCCTATAAATACTCGCTTCTTCTTCATCCTCTGGTTCTTCAGAAAGCATTTGCCGCTTGCGAGGATTTTCGAAGGCTTAACGAGCTCTTAAGATTTCAATCTCTTAGGCAATCCAAGCATGGGGCACTCTAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCCCGCACCTGGTAGCTTGTTTTTTTTTTTTTTTTTTTTTTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTCTGTTTCGCATTTGAGATGATTCCGGTGTGGTATAATCAAATTTTCTATCCTGTGATTGGAGATCTCTTATTTTTCTTTAACATCATGGTTATTTATTTAGATTAGAGTGTAAAGTCGGGAGTCTTGTTAATTTGACGTGGTATTTTGACTAGTAGGCAAAATTATGTGATTGGTTTTGATTTTTGTTCTTGACATAGTTCATAAATTAATGATTTTATGTTTCTTTGATAAATGGAAGCAAGCGTAACGGTTGATTGTGTTGATTTTCTTCTATCCATCTGTTGAAGTTATCTTTATCAATATTTTTTCTCCCGATAAGTTCACATTCTGCAAAAGATTCAGTCTTCTGTTGATTTGGGTATCCGAATCTCTATATTTTCGTACTGAAAATATTGTGTTCTATTGGCTATGATGAGCAATTAAGTGAAGTAATAGAAAAATAGTTCCCGTATGTATCTCCATTTATTTGTCTAGTTTGTCTAAATTTATTAGGTATGAAATCCTCGTTTTCTTTGGATATTAGCACATTGGTGAATTTCCCTATGAATCCCCGATTAAGCCAATGTTCTTATTATCTTTCGTCTAATTTGTTATGGGATTAGGATCATAGCTTTAATGCCGATGAAACATTGGGAGTCCTTAGTAATTAGTCACTAGTAGCATTTGTGGCTGTTGGGTGAACTTTGGTGAATGAAAGAATTCGTGAGATGCTGTATATACTTCCATTTTTGTGTATAATGATTTTTGCATATATATATATATATATATATATATATATATATAGATGCTTTTGGTTGTTAACATTTATCCAGTAATATGATATGAAGGTCTTTTTCTGTTTGAATTAAATTTTTTGTATATGTCTGATCTTTATTGAAGCCGGGTTTGCGGAAACCCTCATGGGTTGATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAACGCCAAGGAAATTGGGTTCATCAAGGTAAGGTTTTCTGAGTTCATGACTATTTGATCATATTGGTTATATTTTGAGCTATACATCCTAAAGTTTTTCAATGTCTTGATCTGTTGAACCTCAACTGTTCTTGCAGTACCGCTAAATGGCCTAGTTTTCTCAGTTCCATTAAGGGTCGATGGAGGGAATATGGTTGCAGCTTTTTCATATATATATATAAGAAGGAACCTTGAATTTCGATTCTGTCTCTAGTTAGTTTTTTTTTTTCTTTTTTCTGGAATCTTCAGTTGATTGTTGAACTTAGACTACAACAATGTTTATTGATTTTGAAGATTTAAGTTAGTGTTTTTCATTCAGCACCATATTCTTCTCTGCCTCCTTTTCCTTGTTCTTTCCGAACGATATTATTGCCTTTTTGTTGGAGTATGGATTGTAGTGCTGATCAAGTTAATGTCCAAGGGCTAGCTTAAGTTGTTGTCAATAGTTTAGGTGCACACAAATTCATTTGGGCACTGA

mRNA sequence

GGGTTTCTTCTCAATGTCTCCCCTATAAATACTCGCTTCTTCTTCATCCTCTGGTTCTTCAGAAAGCATTTGCCGCTTGCGAGGATTTTCGAAGGCTTAACGAGCTCTTAAGATTTCAATCTCTTAGGCAATCCAAGCATGGGGCACTCTAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCCCGCACCTGGATCATAGCTTTAATGCCGATGAAACATTGGGAGTCCTTACCGGGTTTGCGGAAACCCTCATGGGTTGATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAACGCCAAGGAAATTGGGTTCATCAAGGTAAGGTGCACACAAATTCATTTGGGCACTGA

Coding sequence (CDS)

ATGGGGCACTCTAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCCCGCACCTGGATCATAGCTTTAATGCCGATGAAACATTGGGAGTCCTTACCGGGTTTGCGGAAACCCTCATGGGTTGATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAACGCCAAGGAAATTGGGTTCATCAAGGTAAGGTGCACACAAATTCATTTGGGCACTGA
Homology
[Close]
BLAST of CmoCh11G014130 vs. TrEMBL
Match: A0A0B2RF08_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033170 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSRTWIIALMPMKHWESLPGLRKPSWVDQKVRAYVLQTMLPQQR 60
          MGHSNVWNSHPK+YGPGSRTW +      H   +P + + SW+DQ++ AYVLQ +LP+Q 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVT-----HLRQMPCVWESSWIDQEIWAYVLQAVLPKQC 60

Query: 61 QGNWVHQGKV 71
          QGNW+HQ  V
Sbjct: 61 QGNWLHQVSV 65

[Close]
BLAST of CmoCh11G014130 vs. TrEMBL
Match: A3CHR1_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36239 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSRTWIIALMPM-----------KHWESLPGLRKPSWVDQKVRA 60
          MGHSNVWNSHPK+YGPGSR   +                K+W S PG+R+PSW DQ+VRA
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCS-PGVREPSWTDQEVRA 60

Query: 61 YVLQTMLPQQRQGNWVHQGKVHTNSF 76
          +VLQT+LPQQRQG+ +HQ  + ++ F
Sbjct: 61 HVLQTVLPQQRQGHRLHQVPLKSSWF 85

[Close]
BLAST of CmoCh11G014130 vs. TrEMBL
Match: A0A0E0RHR1_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSRTWIIALMPM-----------KHWESLPGLRKPSWVDQKVRA 60
          MGHSNVWNSHPK+YGPGSR   +                K+W S PG+R+PSW DQ+VRA
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELEYFLYDSWDKNWCS-PGVREPSWTDQEVRA 60

Query: 61 YVLQTMLPQQRQGNWVHQGKVHTNSF 76
          +VLQT+LPQQRQG+ +HQ  + ++ F
Sbjct: 61 HVLQTVLPQQRQGHRLHQVPLKSSWF 85

[Close]
BLAST of CmoCh11G014130 vs. TrEMBL
Match: A0A0E0JAX2_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSRTWIIALMPM-----------KHWESLPGLRKPSWVDQKVRA 60
          MGHSNVWNSHPK+YGPGSR   +                K+W S PG+R+PSW DQ+VRA
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSRISELEYFLYDSWDKNWCS-PGVREPSWTDQEVRA 60

Query: 61 YVLQTMLPQQRQGNWVHQGKVHTNSF 76
          +VLQT+LPQQRQG+ +HQ  + ++ F
Sbjct: 61 HVLQTVLPQQRQGHRLHQVPLKSSWF 85

[Close]
BLAST of CmoCh11G014130 vs. TrEMBL
Match: A0A0D9V489_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-07
Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 34 LPGLRKPSWVDQKVRAYVLQTMLPQQRQGNWVHQ 68
          LPG+R+PSW DQ+VRA+VLQ +LPQQRQG+W+HQ
Sbjct: 57 LPGVREPSWADQEVRAHVLQAVLPQQRQGHWLHQ 90

[Close]
BLAST of CmoCh11G014130 vs. TAIR10
Match: AT3G43980.1 (AT3G43980.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 46.6 bits (109), Expect = 8.0e-06
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSR 20
          MGHSNVWNSHPK YGPGSR
Sbjct: 1  MGHSNVWNSHPKKYGPGSR 19

[Close]
BLAST of CmoCh11G014130 vs. TAIR10
Match: AT3G44010.1 (AT3G44010.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 46.6 bits (109), Expect = 8.0e-06
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSR 20
          MGHSNVWNSHPK YGPGSR
Sbjct: 1  MGHSNVWNSHPKKYGPGSR 19

[Close]
BLAST of CmoCh11G014130 vs. TAIR10
Match: AT4G33865.1 (AT4G33865.1 Ribosomal protein S14p/S29e family protein)

HSP 1 Score: 46.6 bits (109), Expect = 8.0e-06
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSR 20
          MGHSNVWNSHPK YGPGSR
Sbjct: 1  MGHSNVWNSHPKKYGPGSR 19

[Close]
BLAST of CmoCh11G014130 vs. NCBI nr
Match: gi|734398101|gb|KHN30432.1| (hypothetical protein glysoja_033170 [Glycine soja])

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSRTWIIALMPMKHWESLPGLRKPSWVDQKVRAYVLQTMLPQQR 60
          MGHSNVWNSHPK+YGPGSRTW +      H   +P + + SW+DQ++ AYVLQ +LP+Q 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVT-----HLRQMPCVWESSWIDQEIWAYVLQAVLPKQC 60

Query: 61 QGNWVHQGKV 71
          QGNW+HQ  V
Sbjct: 61 QGNWLHQVSV 65

[Close]
BLAST of CmoCh11G014130 vs. NCBI nr
Match: gi|125579478|gb|EAZ20624.1| (hypothetical protein OsJ_36239 [Oryza sativa Japonica Group])

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-16
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MGHSNVWNSHPKSYGPGSRTWIIALMPM-----------KHWESLPGLRKPSWVDQKVRA 60
          MGHSNVWNSHPK+YGPGSR   +                K+W S PG+R+PSW DQ+VRA
Sbjct: 1  MGHSNVWNSHPKNYGPGSRVCFVCSSISELQYFLYDSWDKNWCS-PGVREPSWTDQEVRA 60

Query: 61 YVLQTMLPQQRQGNWVHQGKVHTNSF 76
          +VLQT+LPQQRQG+ +HQ  + ++ F
Sbjct: 61 HVLQTVLPQQRQGHRLHQVPLKSSWF 85

The following BLAST results are available for this feature:
BLAST of CmoCh11G014130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G014130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2RF08_GLYSO2.3e-1758.57Uncharacterized protein OS=Glycine soja GN=glysoja_033170 PE=4 SV=1[more]
A3CHR1_ORYSJ2.5e-1653.49Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36239 PE=4 SV=1[more]
A0A0E0RHR1_ORYRU2.5e-1653.49Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1[more]
A0A0E0JAX2_ORYNI2.5e-1653.49Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
A0A0D9V489_9ORYZ2.8e-0773.53Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
BLAST of CmoCh11G014130 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G43980.18.0e-0694.74 Ribosomal protein S14p/S29e family protein[more]
AT3G44010.18.0e-0694.74 Ribosomal protein S14p/S29e family protein[more]
AT4G33865.18.0e-0694.74 Ribosomal protein S14p/S29e family protein[more]
BLAST of CmoCh11G014130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734398101|gb|KHN30432.1|3.3e-1758.57hypothetical protein glysoja_033170 [Glycine soja][more]
gi|125579478|gb|EAZ20624.1|3.6e-1653.49hypothetical protein OsJ_36239 [Oryza sativa Japonica Group][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G014130.1CmoCh11G014130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G014130ClCG02G006720Watermelon (Charleston Gray)cmowcgB088
CmoCh11G014130Lsi03G005680Bottle gourd (USVL1VR-Ls)cmolsiB103
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh11G014130CmoCh19G005720Cucurbita moschata (Rifu)cmocmoB110
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G014130Cucurbita moschata (Rifu)cmocmoB002
CmoCh11G014130Cucurbita moschata (Rifu)cmocmoB096
CmoCh11G014130Cucurbita moschata (Rifu)cmocmoB105
CmoCh11G014130Cucurbita moschata (Rifu)cmocmoB125
CmoCh11G014130Cucurbita moschata (Rifu)cmocmoB129
CmoCh11G014130Cucumber (Gy14) v1cgycmoB0624
CmoCh11G014130Cucumber (Gy14) v1cgycmoB1084
CmoCh11G014130Cucurbita maxima (Rimu)cmacmoB117
CmoCh11G014130Cucurbita maxima (Rimu)cmacmoB318
CmoCh11G014130Cucurbita maxima (Rimu)cmacmoB494
CmoCh11G014130Cucurbita maxima (Rimu)cmacmoB678
CmoCh11G014130Cucurbita maxima (Rimu)cmacmoB761
CmoCh11G014130Wild cucumber (PI 183967)cmocpiB136
CmoCh11G014130Cucumber (Chinese Long) v2cmocuB107
CmoCh11G014130Cucumber (Chinese Long) v2cmocuB137
CmoCh11G014130Melon (DHL92) v3.5.1cmomeB085
CmoCh11G014130Melon (DHL92) v3.5.1cmomeB114
CmoCh11G014130Watermelon (Charleston Gray)cmowcgB123
CmoCh11G014130Watermelon (97103) v1cmowmB081
CmoCh11G014130Watermelon (97103) v1cmowmB109
CmoCh11G014130Cucurbita pepo (Zucchini)cmocpeB087
CmoCh11G014130Cucurbita pepo (Zucchini)cmocpeB092
CmoCh11G014130Cucurbita pepo (Zucchini)cmocpeB095
CmoCh11G014130Cucurbita pepo (Zucchini)cmocpeB114
CmoCh11G014130Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G014130Bottle gourd (USVL1VR-Ls)cmolsiB108
CmoCh11G014130Bottle gourd (USVL1VR-Ls)cmolsiB113
CmoCh11G014130Bottle gourd (USVL1VR-Ls)cmolsiB140
CmoCh11G014130Cucumber (Gy14) v2cgybcmoB156
CmoCh11G014130Cucumber (Gy14) v2cgybcmoB446
CmoCh11G014130Cucumber (Gy14) v2cgybcmoB881
CmoCh11G014130Melon (DHL92) v3.6.1cmomedB091
CmoCh11G014130Melon (DHL92) v3.6.1cmomedB123
CmoCh11G014130Melon (DHL92) v3.6.1cmomedB143
CmoCh11G014130Silver-seed gourdcarcmoB0256
CmoCh11G014130Silver-seed gourdcarcmoB0401
CmoCh11G014130Silver-seed gourdcarcmoB0508
CmoCh11G014130Silver-seed gourdcarcmoB0612
CmoCh11G014130Cucumber (Chinese Long) v3cmocucB0121
CmoCh11G014130Cucumber (Chinese Long) v3cmocucB0136
CmoCh11G014130Cucumber (Chinese Long) v3cmocucB0160
CmoCh11G014130Watermelon (97103) v2cmowmbB088
CmoCh11G014130Watermelon (97103) v2cmowmbB112
CmoCh11G014130Watermelon (97103) v2cmowmbB128
CmoCh11G014130Wax gourdcmowgoB0112
CmoCh11G014130Wax gourdcmowgoB0124
CmoCh11G014130Wax gourdcmowgoB0142