CmoCh19G002960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G002960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr19 : 2188115 .. 2189095 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAACTAGGAGGATTCATGTGCCAATCTCCGGCCGCCACCGCAGTATGCATCCCCGCCGATCCTCGGTCCGCAGTCGTGTCAAGAAGAAGCCTGGCTAGAGCCAACAGCCTTAAGAATGCCAATGCCAATGGCAACCGTGTGAGGTTGGTGAGCAATGCTGTGAAGTACTCCAAGCTTCGCAAGTCTCCGAGCGCGGGAACGACGAACGACGTGAAGAAGCCGGTGACACTTATGCTTTCCTCGCCACCGCCCCCACCGGAGAATGTCTTCCATGTGGTGGTTATGAAGGTGGCGCTTCACTGCCAAGGCTGTGCTAGTAAAGTTAAGAGGCATCTCACCAAAATGGAAGGTAGAAAATCATATTTATAAACTATATATATATAGATATATATATATATATATATATATATATGCATACACACATACATATATATGTATGTGTGTATGTGTGTATGTGTGTATATATATATATGTATGTGTGTATATGTATGTGTATATATATATATGTATGTATATATATGTGTGTGTATGCATGCATATATATGTATGTATGTATGTATATATGTATGTATGTATTATATGTATGTATGTATGCATACATATACATATATATATATATATATATATTTGTATTATTTATAATGACCAATATTTTGAAAATTAAGAAACAATTTAAATACTAAAAAGAAATCTTTTTAAAATTTATTTTTGTGATTTGGAATTTGATTAAAAAATTAAAATTATAGTAAAAAATTGAAAAGAAATAAACCAATATTTAAAGGATAAAAAATAGTGATAAAAGGGCTAAAAAAGGAAATTTAAGGAAGAAAATGACATTTATTATTATTATTATTATTATTATTTACTAAAATTGTAATTGACAGGAGTGACGTCATTCAGCATAGATCTAGAGGCCAAGAGAGTGACTGTGATGGGACATATTTCACCGCTGGGTGTCTTGGAGAGTCTTTCTAA

mRNA sequence

ATGAAGAAACTAGGAGGATTCATGTGCCAATCTCCGGCCGCCACCGCAGTATGCATCCCCGCCGATCCTCGGTCCGCAGTCGTGTCAAGAAGAAGCCTGGCTAGAGCCAACAGCCTTAAGAATGCCAATGCCAATGGCAACCGTGTGAGGTTGGTGAGCAATGCTGTGAAGTACTCCAAGCTTCGCAAGTCTCCGAGCGCGGGAACGACGAACGACGTGAAGAAGCCGGTGACACTTATGCTTTCCTCGCCACCGCCCCCACCGGAGAATGTCTTCCATGTGGTGGTTATGAAGCATAGATCTAGAGGCCAAGAGAGTGACTGTGATGGGACATATTTCACCGCTGGGTGTCTTGGAGAGTCTTTCTAA

Coding sequence (CDS)

ATGAAGAAACTAGGAGGATTCATGTGCCAATCTCCGGCCGCCACCGCAGTATGCATCCCCGCCGATCCTCGGTCCGCAGTCGTGTCAAGAAGAAGCCTGGCTAGAGCCAACAGCCTTAAGAATGCCAATGCCAATGGCAACCGTGTGAGGTTGGTGAGCAATGCTGTGAAGTACTCCAAGCTTCGCAAGTCTCCGAGCGCGGGAACGACGAACGACGTGAAGAAGCCGGTGACACTTATGCTTTCCTCGCCACCGCCCCCACCGGAGAATGTCTTCCATGTGGTGGTTATGAAGCATAGATCTAGAGGCCAAGAGAGTGACTGTGATGGGACATATTTCACCGCTGGGTGTCTTGGAGAGTCTTTCTAA

Homology

[Close]

BLAST of CmoCh19G002960 vs. TrEMBL
Match: A0A0A0K2I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G060180 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 61/107 (57.01%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 1   MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANA-NGNR-VRLVS-NAVK 60
           MKKLGGFMC S A TAVCIP+DPRS VVSRR LAR +   N +A NGNR  R VS N VK
Sbjct: 1   MKKLGGFMCHSAATTAVCIPSDPRSTVVSRR-LARPDYANNNHANNGNRSARFVSNNTVK 60

Query: 61  YSKLRKSP------SAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK 99
           YSKL +S       S G   ++KKP   ++ S P    NVFHVVVM+
Sbjct: 61  YSKLVESSPSLSVRSEGKHINLKKPAMPVMLSSPAENNNVFHVVVMR 106

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BLAST of CmoCh19G002960 vs. NCBI nr
Match: gi|659111017|ref|XP_008455533.1| (PREDICTED: uncharacterized protein LOC103495684 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 5.6e-19
Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 1


Query: 1   MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANA-NGNRVRLVSNAVKYS 60
           MKKLGGF C S A TAVCIPADPRSAVVSRR LARA+ + N +A NGNR RLVSNAVKYS
Sbjct: 1   MKKLGGFTCHSAATTAVCIPADPRSAVVSRR-LARADYVNNNHANNGNRARLVSNAVKYS 60

Query: 61  KLRKSP------SAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK 99
           KL +S       S G   ++KKP   ++ S P    NVFHVVVM+
Sbjct: 61  KLVESSPSLSVRSEGKQINLKKPAMPVMLSSPAENNNVFHVVVMR 104

[Close]

BLAST of CmoCh19G002960 vs. NCBI nr
Match: gi|778724303|ref|XP_011658781.1| (PREDICTED: uncharacterized protein LOC105436087 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 61/107 (57.01%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 1   MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANA-NGNR-VRLVS-NAVK 60
           MKKLGGFMC S A TAVCIP+DPRS VVSRR LAR +   N +A NGNR  R VS N VK
Sbjct: 1   MKKLGGFMCHSAATTAVCIPSDPRSTVVSRR-LARPDYANNNHANNGNRSARFVSNNTVK 60

Query: 61  YSKLRKSP------SAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK 99
           YSKL +S       S G   ++KKP   ++ S P    NVFHVVVM+
Sbjct: 61  YSKLVESSPSLSVRSEGKHINLKKPAMPVMLSSPAENNNVFHVVVMR 106

The following BLAST results are available for this feature:

BLAST of CmoCh19G002960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2I2_CUCSA	2.2e-14	57.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G060180 PE=4 SV=1	[more]

BLAST of CmoCh19G002960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111017\|ref\|XP_008455533.1\|	5.6e-19	61.90	PREDICTED: uncharacterized protein LOC103495684 [Cucumis melo]	[more]
gi\|778724303\|ref\|XP_011658781.1\|	3.2e-14	57.01	PREDICTED: uncharacterized protein LOC105436087 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030001	metal ion transport
biological_process	GO:0046916	cellular transition metal ion homeostasis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046914	transition metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002960.1	CmoCh19G002960.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G002960	CmaCh19G002710	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G002960	Cla006387	Watermelon (97103) v1	cmowmB473
CmoCh19G002960	ClCG09G015140	Watermelon (Charleston Gray)	cmowcgB445
CmoCh19G002960	Lsi03G007850	Bottle gourd (USVL1VR-Ls)	cmolsiB466
CmoCh19G002960	Cp4.1LG15g02430	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G002960	MELO3C018661.2	Melon (DHL92) v3.6.1	cmomedB515
CmoCh19G002960	CsaV3_7G006310	Cucumber (Chinese Long) v3	cmocucB0627
CmoCh19G002960	Cla97C09G177230	Watermelon (97103) v2	cmowmbB535
CmoCh19G002960	Bhi05G000669	Wax gourd	cmowgoB0656
CmoCh19G002960	CsGy7G004970	Cucumber (Gy14) v2	cgybcmoB931
CmoCh19G002960	Carg24572	Silver-seed gourd	carcmoB0890

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G002960	Silver-seed gourd	carcmoB1001
CmoCh19G002960	Cucurbita moschata (Rifu)	cmocmoB109
CmoCh19G002960	Cucumber (Gy14) v1	cgycmoB0628
CmoCh19G002960	Cucurbita maxima (Rimu)	cmacmoB147
CmoCh19G002960	Wild cucumber (PI 183967)	cmocpiB529
CmoCh19G002960	Cucumber (Chinese Long) v2	cmocuB523
CmoCh19G002960	Melon (DHL92) v3.5.1	cmomeB446
CmoCh19G002960	Cucurbita pepo (Zucchini)	cmocpeB493