CmoCh19G000080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G000080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionU6 snRNA-associated Sm-like protein LSm2
LocationCmo_Chr19 : 58263 .. 61342 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACACACCCCTTTGTAAGAGTTCGGGCGGCATTTCGACCTTTGGAAGTCGTCGATCGTCGAGCGGAGATAGACTGAAGATCGGCAACTCAAACCTCTACTGAAATGGTAATTCCTCCTTCGTTTAAGATTTTCGTTAATGTTAGTCCTACCTCAGGGCTGAAGCATTTGTTTGTCTCGTTTTTTGCTTCCGTTATTTCATCTCAGATCCTTCACGGTTTCTAAAATCTCTGGTCTATATGCGTTTGGAGTTTGATTTATGTTTTGTTTGTCAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTAGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGGTATCTAATTTCTTACCTTTCTTGTCATTTCTGCCTCTTATTTACTAGAGTTGCCTTTTAATGCTCATTTAATTCTAATAATTTGGAAGGTTGTCTGGCGAGATGCATGATATGTGGTTATGGTCCACAGATTATTTGTACCGTCGTTTGTTATCGTCACCCTAAGATTTTCATTTTATATATTCTTTTAATTGAGAATGTTGATCTTCTTTTCATCCATTGCTCTTTCTTGAATTTTCTCGGGGGTAAAGTTTCAAGTAATTTTGTGGGTGGTTCCCAAATCGGTGAAAATTCCAAGTAATCTTGTTGCTTGGTTAGAGTTCCCAACGGGGAGGGGACCTGTTAGAAATCATGGTTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAATTTCTCATGGTTTTGGTTTGGGCTTCCCCAAAACGCCTCAATACCAATGGAGTTGTATTTCTTACTTATAAACCCATGATCATTCCCTAAATTAGCCAATGTGGGACTCTCTCCCAACAATCTTCAACAGGTTCTTATTTGTTAACTTTATTTTTAGAACAATACATTGCACACGAGTTGAGGTGAATATATTAAATTTATATCTACAACCTTCTAATGTGGATTGTACCAGAGTAGAAAATATTGCGAGTCTTATCCAAAAAAAAGCAAGTATATGTTAAAGTAGAGGATTCTTGATAATTTCCTGTTCGAAATGAATTTGATTTTCTAATTTCATGAGGGTTTTAAAACACTGGTTTTGATTGAACTCATTAATCTGGATGTTGCATCTAGTTCATGATTTTTATTTCAGCAAATCAATACTTACTGGTGTAGTGGATCAGTAGGATTTTTCTAGTATGAATTGTTCTTTTAGTAAGAATTTCTGAATTATTTATTTTAAAGTTGGAGATTGATATGACTGTCAAGTAGTTTTGTAGAGCAATTTCTTTTTTCGTCAGTTAGTTTGTTCTTGTTTGATATTCAGTTAACTGGTAAATGAAGGGATGATCACTTGTATTTTCAGCACATTTTGAACGGGGTAGAATTTTTTGTTCTTGAGTCTAAATTTTAAGCTGCATTAATAAATCAGTGCGGGGGAACACTCACATTGTAGTACTCGTGCAAGTATTTTAAGAGGCCAAGAAATGCTGCATATAAAGAGGGGCCATCTTCAGACCAAGAACTCTCATTTTGTATTGACAATGTAGTTTATATAGATATTGTAACTAAACGCCCAGCCTAAGTACTGTGGTGGCTTTTTGACCAAATGTTAGTTTAACACTACTTGCACAAAGGAACCACTTTCATTCTTCAGCTTGTCAAATGTTGAGGATTGTAGAGAGAGGAGTCCCAATGATCACTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAATACTATCTTCATTGGTATGAGGCCTTTCGAGGAAACCAAAAGCAAACCCATGAGAGCTTACACTCAAAGTGGACAATATTATACAATTGTGGAGGTTCGTGATTCCTCACATGGTATTAGAGTCATGCCCTTAACTTAGCCATGTCAATGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGTTTCGAAGGTGTAGTCAAAAGTAACTCAAGTGTCGAACAGATGGTGTATTTTGTTCGAGGGCTCTAGAGAAAAGGAGTCGAGCCTCGATTAAGGGGAGGCTGTTCGAGGACTCCATAGGCCTCATGAGAGGCTTTATGGTGTACTTTGTTCGAGTGGAGGATCGTTGAGGATTGTTGGGAGAGGAGTCCCAATGATCACTAATTAAGGGGTTGATCAAGGGTTTATAAGTAAGGAATACTATCTTCATTGGTACGAGACATTTTAAGAAAACCAAAAACAATGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGGTTCGTGATTCCTAACCTCAAATCTGGCCGATCTTGATTGATTCCAAATCCTTCTATGGCTTCCTAACCACACTCATAATCATGGCCATGATGTGTAAACTTTGGTTTAAAAGGTATCTTGTGACGAGCATGGGATACATAAGAACAAATTTTAAGCGTGTAGGAACAGGTCTTATTTCCCAGTCTCTAGTTTGTGTTTGTTGTAGAATGTGTTCTGTTTTAATTCTCTTTTCTTGTTTTTACTTGATCAAGAACATCTGTTGTCTGTAATTTTTGTTGCTGTGATTGGAGTAATGGAGTTAAAATTTTACCTTTTCAGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTCGTAAGTTTGTAAGTTTGTATGGAATGGCATGGATATTGGTTAAAGTGCATTCTTTTGTGTACCGCAATGCGTGACGGTTGTACTTCGTGATGGTTGCCTCACATTATTCTGTGTTCAAGTATTGTCGTGCAAAGAATCCAATGAGATTCTATTCAGCAGGTGATAGTGAATGGTAATTCAAAGAATCCAAAGGATAAATGAATGGTAGTTTGTAGCTGTTATTTTAGTGTGTTCTCACATGCTCTATATGTAACATGAATTTTTTTTTTCAACGTATGTTGCTCATCGC

mRNA sequence

AAAACACACCCCTTTGTAAGAGTTCGGGCGGCATTTCGACCTTTGGAAGTCGTCGATCGTCGAGCGGAGATAGACTGAAGATCGGCAACTCAAACCTCTACTGAAATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTAGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTCGTAAGTTTGTAAGTTTGTATGGAATGGCATGGATATTGGTTAAAGTGCATTCTTTTGTGTACCGCAATGCGTGACGGTTGTACTTCGTGATGGTTGCCTCACATTATTCTGTGTTCAAGTATTGTCGTGCAAAGAATCCAATGAGATTCTATTCAGCAGGTGATAGTGAATGGTAATTCAAAGAATCCAAAGGATAAATGAATGGTAGTTTGTAGCTGTTATTTTAGTGTGTTCTCACATGCTCTATATGTAACATGAATTTTTTTTTTCAACGTATGTTGCTCATCGC

Coding sequence (CDS)

ATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTAGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAA
Homology
[Close]
BLAST of CmoCh19G000080 vs. Swiss-Prot
Match: LSM2_ARATH (Sm-like protein LSM2 OS=Arabidopsis thaliana GN=LSM2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-45
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDLSI GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]
BLAST of CmoCh19G000080 vs. Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDLSI GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]
BLAST of CmoCh19G000080 vs. Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.3e-31
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS++K LVG+E+TVELKNDLSI G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1  MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREAR 92
          FIRGSVVRYV LP + VD+E L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]
BLAST of CmoCh19G000080 vs. Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.5e-27
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN 
Sbjct: 1  MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRRE 90
          FIRGS VRYV L  + VD  LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]
BLAST of CmoCh19G000080 vs. TrEMBL
Match: A0A0D2QWG3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G083500 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. TrEMBL
Match: A0A059A8I3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03403 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. TrEMBL
Match: A0A0B0N830_GOSAR (U6 snRNA-associated Sm-like protein LSm2 OS=Gossypium arboreum GN=F383_34743 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. TrEMBL
Match: V7CYC4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G148500g PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1   MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 33  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 92

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 93  FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 125

[Close]
BLAST of CmoCh19G000080 vs. TrEMBL
Match: G7KQV7_MEDTR (U6 snRNA-associated-like-Smprotein OS=Medicago truncatula GN=MTR_7g104700 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. TAIR10
Match: AT1G03330.1 (AT1G03330.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 183.3 bits (464), Expect = 6.7e-47
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. NCBI nr
Match: gi|702500049|ref|XP_010038129.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Eucalyptus grandis])

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. NCBI nr
Match: gi|659122704|ref|XP_008461281.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 9.0e-46
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. NCBI nr
Match: gi|719972875|ref|XP_010278777.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nelumbo nucifera])

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDI+LLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIDLLHDATRREARGG 93

[Close]
BLAST of CmoCh19G000080 vs. NCBI nr
Match: gi|296086695|emb|CBI32330.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1   MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 45  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 104

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 105 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 137

[Close]
BLAST of CmoCh19G000080 vs. NCBI nr
Match: gi|593798712|ref|XP_007162394.1| (hypothetical protein PHAVU_001G148500g [Phaseolus vulgaris])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1   MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 33  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 92

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 93  FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 125

The following BLAST results are available for this feature:
BLAST of CmoCh19G000080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM2_ARATH1.2e-4593.55Sm-like protein LSM2 OS=Arabidopsis thaliana GN=LSM2 PE=1 SV=1[more]
LSM2_MOUSE1.8e-3375.56U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=1 SV=1[more]
LSM2_HUMAN1.8e-3375.56U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1[more]
LSM2_DICDI6.3e-3168.13Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN... [more]
LSM2_YEAST5.5e-2766.29U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC... [more]
BLAST of CmoCh19G000080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2QWG3_GOSRA4.8e-4698.92Uncharacterized protein OS=Gossypium raimondii GN=B456_004G083500 PE=4 SV=1[more]
A0A059A8I3_EUCGR4.8e-4698.92Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03403 PE=4 SV=1[more]
A0A0B0N830_GOSAR4.8e-4698.92U6 snRNA-associated Sm-like protein LSm2 OS=Gossypium arboreum GN=F383_34743 PE=... [more]
V7CYC4_PHAVU1.4e-4597.85Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G148500g PE=4 SV=1[more]
G7KQV7_MEDTR1.4e-4597.85U6 snRNA-associated-like-Smprotein OS=Medicago truncatula GN=MTR_7g104700 PE=4 S... [more]
BLAST of CmoCh19G000080 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03330.16.7e-4793.55 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmoCh19G000080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|702500049|ref|XP_010038129.1|6.9e-4698.92PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Eucalyptus grandis][more]
gi|659122704|ref|XP_008461281.1|9.0e-4697.85PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Cucumis melo][more]
gi|719972875|ref|XP_010278777.1|1.5e-4597.85PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nelumbo nucifera][more]
gi|296086695|emb|CBI32330.3|2.0e-4597.85unnamed protein product [Vitis vinifera][more]
gi|593798712|ref|XP_007162394.1|2.0e-4597.85hypothetical protein PHAVU_001G148500g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR016654U6_snRNA_Lsm2
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G000080.1CmoCh19G000080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..71
score: 5.6
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
score: 7.0
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 3..92
score: 8.88
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRPIRSF016394Lsm2coord: 1..93
score: 3.4
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 1..93
score: 3.7
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..82
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G000080CmaCh19G000080Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G000080CmaCh02G018130Cucurbita maxima (Rimu)cmacmoB598
CmoCh19G000080Cp4.1LG15g00010Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G000080Cp4.1LG05g01730Cucurbita pepo (Zucchini)cmocpeB498
CmoCh19G000080Carg16815Silver-seed gourdcarcmoB1021
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh19G000080CmoCh02G018580Cucurbita moschata (Rifu)cmocmoB387
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G000080Bottle gourd (USVL1VR-Ls)cmolsiB479
CmoCh19G000080Cucumber (Gy14) v2cgybcmoB761
CmoCh19G000080Cucumber (Gy14) v2cgybcmoB766
CmoCh19G000080Melon (DHL92) v3.6.1cmomedB538
CmoCh19G000080Cucumber (Chinese Long) v3cmocucB0615
CmoCh19G000080Cucumber (Chinese Long) v3cmocucB0621
CmoCh19G000080Watermelon (97103) v2cmowmbB526
CmoCh19G000080Wax gourdcmowgoB0651
CmoCh19G000080Cucumber (Gy14) v1cgycmoB0527
CmoCh19G000080Cucumber (Gy14) v1cgycmoB0530
CmoCh19G000080Wild cucumber (PI 183967)cmocpiB519
CmoCh19G000080Cucumber (Chinese Long) v2cmocuB511
CmoCh19G000080Cucumber (Chinese Long) v2cmocuB517
CmoCh19G000080Melon (DHL92) v3.5.1cmomeB466
CmoCh19G000080Watermelon (Charleston Gray)cmowcgB466
CmoCh19G000080Watermelon (97103) v1cmowmB484