Carg16815 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16815
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U6 snRNA-associated Sm-like protein LSm2
Location	Cucurbita_argyrosperma_scaffold_105 : 64176 .. 67208 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAAGAGTTCGGGCGGCATTTCGACCTTTGGAAGTCGTCGATCGTCGAGCGGAGATAGACTGAAGATCGGCAACTCAAACCTCTACTGAAATGGTAATTCCTCCTTCGTTTAAGATTTTCGTTAATGTTAGTCCTACCTCAGGGCTGAAGCATTTGTTTGTCTCGTTTTGTGCTTCCGTTATTTCATCTCAGATCCTTCACGGTTTCTAAAATCTCTGGTCTATATGCGTTTGGAGTTTGATTTATGTTTTGTTTGTCAGTTGTTTTTCTCCTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTAGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGGTATCTAATTTCTTACCTTTCTTGTCATTTCTGCCTCTTATTTACTAGAGTTGCCTTTTAATGCTCATTTAATTCTAATAATTTGGAAGGTTGTCTGGCGAGATGCATGATATGTGGTTATGGTCCACAGATTATTTGTACCGTCGTTTGTTATCATCACCCTAAGATTTTCATTTTATATATTGTTTTAATTGAGAATGTTGATCTTCTTTTCATCCTTTGCTCTTTCTTGAATTTTCTCGGGGGTAAAGTTTCAAGTAATTTTGTGGGTGGTTCCCAAATCGGTGAAAATTCCAAGTAATCTTGTTGCTTGGTTAGAGTTCCCAACGGGAACCTGTTAGAAATCACGGTTCTCCACAATTGTATGATATTGTCCACTTTAAGCATAATTTCTCATGGTTTTGTTTTGGGCTTCCCCAAAAGGCCTCAATACCAATGGAGCTGTATTTCTTACTTATAAACCCATGATCATTCCCTAAATTAGCCAATGTGGGACTCTCTCCCAACAATCTTGAACAGGTTCTTATTTGTTAACTTTGTTTTTAGAACAATACATTGCACACGAGTTGAGGTGGATATATTAAATTTTATCTACAACCTTCTAATGTGGATTGTACCAGAGTAGAAAATATTGCGAGTCTTATCCAAAAAAAGCAAGTATATGTCAAAGTAGAGGATTCTTGATAATTTCCTGTTCGAAATGAATTTGATTTTCTAATTCCATGAGGGTTTTAAAACACTGGTTTTGATTGAACTCATTAATCTGGATGTTGCATCTAGTTCATGATTTTTATTTCAGCGAATCAATACTTACTGGTGTAGTGTATCAGTAGGATTTTTCTAGTATGAATTGTTCTTTTAGTAAGAATTTCTGAATTATTTATTTTAAAGTTGGAGATTGATATGACTGTCAAGTAGTTTTGTAGAGCAATTTCTTTTTTCGTCAGTTAGTTTGTTCTTGTTTGATATTCAGTTAACTGGTAAATGAAGGGATGATCACTTGTATTTTCAGCACATTTTGAACGGGGTAGAATTTTTTGTTCTTGAGTCTAAATTTTAAGCTGCATTAATAAATCAGTGCGGGGGAACACTCACATAGTAGTTCTCGTGCAAGTATTTTAAGAGGCCAAGAAATGCGGCATATAAAGAGGGGCCATCTTCAGACCAAGAACTCTCATTTTGTATTGACAATGTAGTTTATATAGATATTGTAACTAAACGCCCAGCCTAAGTACTGTGGTGGCTTTTTGACCAAATGTTAGTTTAACACTACTCGCACAAAGGAACCACTTTCATTCTTCAGCTTGTCAAATGTTGAGGATGGTAGGGAGAGGAGTCCCAATGATCACTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAATACTATCTCCATTGGTATGAGGCCTTTCGAGGAAACCAAAAGCAAACCCATGAGAGCTTACGCTCAAAGTGGACAATATCATACAATTGTGGAGGTTCGTGATTCCTAACATGGTATTAGAGTCATGCCCTTAACTTAGCTATGTCAATGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGTTTCGAAGGTGTAGTCAAAAGTAACTCAAGTGTCGAACAGATGGTGTATTTTGTTCGAGGCTCTAGAGAAAAAGGAGTCGAGCCTCGATTAAGGGGAGGCTGTTCGAGGGCTCCATAGGCCTCATGAGAGGCTTTATGGTGTACTTTGTTCGAGTGGAGGATCGTTGAGGATTGTTGGGAGAGGAGTCCCAATGATCACTAATTAAGGGGTTGATCAAGGGTTTATAAGTAAGGAATATTATCTCCATTGGTACGAGACATTTTAGGAAAACCAAAAGCAATGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGGTTCGTGATTCGTAACCTCAAATCCGGCAGATCTTGATTGATTCCAAATCCTTCTATGGCTTCCTAACCACACTCATAATCATGGCCATGATGTGTAAACTTTGGTTTAAAAGGGGTATCTTGTGACGAGCATGGGATACATAAGAACAAATTTTAAGCGTGTAGGAACAGGTCTTATTTCCCAGTCTCTAGTTTGTGTTTGTTGTAGAATATGTTCTGTTTTAATTCTCTCTTCTTGTTTTTACTTGATCAAGAACATCTGTTGTCTGTAATTTTTGTTGCTGTGATTGGAGTAATGGAGTTAAAATTTTACCTTTTCAGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTTGTAAGTTTGTAAGTTTGTATGGAATGGCATGGATATTGATTAAAGTGCATTCTTTTGTGTACCGCAATGCGTGACGGTTGTACTTCGTGATGGTTGCCTCACATTATTCTGTGTTCAAGTATTGTCGTGCAAAGAATCCAATGAGATTCTATTCAGCAGGTGATAGTGAATGGTAATTCAAAGAATCCAAAGGATAAATGAATGGTAGTTTGTAGCTGTTATTTTAGTGTTCTCACATGCTCTATATGTAACATGAATTTT

mRNA sequence

TATAAGAGTTCGGGCGGCATTTCGACCTTTGGAAGTCGTCGATCGTCGAGCGGAGATAGACTGAAGATCGGCAACTCAAACCTCTACTGAAATGTTGTTTTTCTCCTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTAGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTTGTAAGTTTGTAAGTTTGTATGGAATGGCATGGATATTGATTAAAGTGCATTCTTTTGTGTACCGCAATGCGTGACGGTTGTACTTCGTGATGGTTGCCTCACATTATTCTGTGTTCAAGTATTGTCGTGCAAAGAATCCAATGAGATTCTATTCAGCAGGTGATAGTGAATGGTAATTCAAAGAATCCAAAGGATAAATGAATGGTAGTTTGTAGCTGTTATTTTAGTGTTCTCACATGCTCTATATGTAACATGAATTTT

Coding sequence (CDS)

ATGTTGTTTTTCTCCTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTAGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAA

Protein sequence

MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Homology

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BLAST of Carg16815 vs. NCBI nr
Match: XP_022963466.1 (sm-like protein LSM2 [Cucurbita moschata] >XP_022967419.1 sm-like protein LSM2 [Cucurbita maxima] >XP_023553723.1 sm-like protein LSM2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.6 bits (488), Expect = 6.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. NCBI nr
Match: XP_010038129.1 (PREDICTED: sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like protein LSM2 [Gossypium raimondii] >XP_017617356.1 PREDICTED: sm-like protein LSM2 [Gossypium arboreum] >XP_017983243.1 PREDICTED: sm-like protein LSM2 [Theobroma cacao] >XP_021279792.1 sm-like protein LSM2 [Herrania umbratica] >XP_022159883.1 sm-like protein LSM2 [Momordica charantia] >XP_022155587.1 sm-like protein LSM2 [Momordica charantia] >XP_022771071.1 sm-like protein LSM2 [Durio zibethinus] >XP_022931098.1 sm-like protein LSM2 [Cucurbita moschata] >XP_022995665.1 sm-like protein LSM2 [Cucurbita maxima] >XP_023533254.1 sm-like protein LSM2 [Cucurbita pepo subsp. pepo] >KCW49941.1 hypothetical protein EUGRSUZ_K03403 [Eucalyptus grandis] >KHG07251.1 U6 snRNA-associated Sm-like protein LSm2 [Gossypium arboreum] >KJB21471.1 hypothetical protein B456_004G083500 [Gossypium raimondii] >PKI70582.1 hypothetical protein CRG98_009087 [Punica granatum])

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. NCBI nr
Match: XP_008461281.1 (PREDICTED: sm-like protein LSM2 [Cucumis melo] >XP_021898297.1 LOW QUALITY PROTEIN: sm-like protein LSM2 [Carica papaya] >PIN18182.1 putative snRNP core protein [Handroanthus impetiginosus])

HSP 1 Score: 191.0 bits (484), Expect = 1.8e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. NCBI nr
Match: XP_010278777.1 (PREDICTED: sm-like protein LSM2 [Nelumbo nucifera])

HSP 1 Score: 190.3 bits (482), Expect = 3.0e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDI+LLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIDLLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. NCBI nr
Match: XP_016739463.1 (PREDICTED: sm-like protein LSM2 [Gossypium hirsutum])

HSP 1 Score: 190.3 bits (482), Expect = 3.0e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDL+GREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLMGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. TAIR10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 183.3 bits (464), Expect = 6.7e-47
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of Carg16815 vs. TAIR10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 42.0 bits (97), Expect = 2.4e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 6  YFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
          + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 77

Query: 66 VVRYV 71
           V Y+
Sbjct: 78 NVLYI 80

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BLAST of Carg16815 vs. TAIR10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.1e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDIELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SLRGNNIRYYIL-PDSLNLETL 79

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BLAST of Carg16815 vs. Swiss-Prot
Match: sp|Q1H595|LSM2_ARATH (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-45
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of Carg16815 vs. Swiss-Prot
Match: sp|Q9Y333|LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDLSI GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of Carg16815 vs. Swiss-Prot
Match: sp|O35900|LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDLSI GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of Carg16815 vs. Swiss-Prot
Match: sp|Q54TF6|LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.4e-31
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS++K LVG+E+TVELKNDLSI G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1  MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREAR 92
          FIRGSVVRYV LP + VD+E L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]

BLAST of Carg16815 vs. Swiss-Prot
Match: sp|P38203|LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.6e-27
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN 
Sbjct: 1  MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRRE 90
          FIRGS VRYV L  + VD  LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]

BLAST of Carg16815 vs. TrEMBL
Match: tr|A0A059A8I3|A0A059A8I3_EUCGR (Sm-like protein LSM2 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03403 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.9e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. TrEMBL
Match: tr|A0A0B0N830|A0A0B0N830_GOSAR (Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=F383_34743 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.9e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. TrEMBL
Match: tr|A0A0D2QWG3|A0A0D2QWG3_GOSRA (Sm-like protein LSM2 OS=Gossypium raimondii OX=29730 GN=B456_004G083500 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.9e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. TrEMBL
Match: tr|A0A2I0KQ33|A0A2I0KQ33_PUNGR (Sm-like protein LSM2 OS=Punica granatum OX=22663 GN=CRG98_009087 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.9e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of Carg16815 vs. TrEMBL
Match: tr|A0A1S3CDX8|A0A1S3CDX8_CUCME (Sm-like protein LSM2 OS=Cucumis melo OX=3656 GN=LOC103499918 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

The following BLAST results are available for this feature:

BLAST of Carg16815 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963466.1	6.0e-46	100.00	sm-like protein LSM2 [Cucurbita moschata] >XP_022967419.1 sm-like protein LSM2 [...	[more]
XP_010038129.1	1.3e-45	98.92	PREDICTED: sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: ...	[more]
XP_008461281.1	1.8e-45	97.85	PREDICTED: sm-like protein LSM2 [Cucumis melo] >XP_021898297.1 LOW QUALITY PROTE...	[more]
XP_010278777.1	3.0e-45	97.85	PREDICTED: sm-like protein LSM2 [Nelumbo nucifera]	[more]
XP_016739463.1	3.0e-45	97.85	PREDICTED: sm-like protein LSM2 [Gossypium hirsutum]	[more]

BLAST of Carg16815 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03330.1	6.7e-47	93.55	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	2.4e-04	33.85	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	4.1e-04	29.27	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Carg16815 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1H595\|LSM2_ARATH	1.2e-45	93.55	Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1	[more]
sp\|Q9Y333\|LSM2_HUMAN	1.8e-33	75.56	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV...	[more]
sp\|O35900\|LSM2_MOUSE	1.8e-33	75.56	U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 S...	[more]
sp\|Q54TF6\|LSM2_DICDI	6.4e-31	68.13	Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX...	[more]
sp\|P38203\|LSM2_YEAST	5.6e-27	66.29	U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of Carg16815 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A059A8I3\|A0A059A8I3_EUCGR	8.9e-46	98.92	Sm-like protein LSM2 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03403 PE=3 SV=1	[more]
tr\|A0A0B0N830\|A0A0B0N830_GOSAR	8.9e-46	98.92	Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=F383_34743 PE=3 SV=1	[more]
tr\|A0A0D2QWG3\|A0A0D2QWG3_GOSRA	8.9e-46	98.92	Sm-like protein LSM2 OS=Gossypium raimondii OX=29730 GN=B456_004G083500 PE=3 SV=...	[more]
tr\|A0A2I0KQ33\|A0A2I0KQ33_PUNGR	8.9e-46	98.92	Sm-like protein LSM2 OS=Punica granatum OX=22663 GN=CRG98_009087 PE=3 SV=1	[more]
tr\|A0A1S3CDX8\|A0A1S3CDX8_CUCME	1.2e-45	97.85	Sm-like protein LSM2 OS=Cucumis melo OX=3656 GN=LOC103499918 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR016654	U6_snRNA_Lsm2
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16815-RA	Carg16815-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..72 e-value: 7.0E-18 score: 75.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..71 e-value: 5.8E-17 score: 61.0
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PIRSF	PIRSF016394	Lsm2	coord: 1..93 e-value: 4.1E-51 score: 168.9
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PANTHER	PTHR13829	SNRNP CORE PROTEIN FAMILY MEMBER	coord: 1..91
IPR016654	U6 snRNA-associated Sm-like protein LSm2	CDD	cd01725	LSm2	coord: 2..90 e-value: 4.05489E-61 score: 182.403
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 1..92 e-value: 2.7E-34 score: 118.7
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 3..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16815	CmaCh19G000080	Cucurbita maxima (Rimu)	carcmaB1049
Carg16815	CmaCh02G018130	Cucurbita maxima (Rimu)	carcmaB1051
Carg16815	CmoCh19G000080	Cucurbita moschata (Rifu)	carcmoB1021
Carg16815	CmoCh02G018580	Cucurbita moschata (Rifu)	carcmoB1023
Carg16815	Cp4.1LG15g00010	Cucurbita pepo (Zucchini)	carcpeB1057
Carg16815	Cp4.1LG05g01730	Cucurbita pepo (Zucchini)	carcpeB1062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16815	Cucumber (Gy14) v2	carcgybB0748
Carg16815	Cucumber (Gy14) v2	carcgybB0750
Carg16815	Cucumber (Gy14) v1	carcgyB0844
Carg16815	Wild cucumber (PI 183967)	carcpiB0788
Carg16815	Wild cucumber (PI 183967)	carcpiB0790
Carg16815	Cucumber (Chinese Long) v2	carcuB0770
Carg16815	Cucumber (Chinese Long) v2	carcuB0772
Carg16815	Cucumber (Chinese Long) v3	carcucB0793
Carg16815	Cucumber (Chinese Long) v3	carcucB0791
Carg16815	Melon (DHL92) v3.5.1	carmeB0745
Carg16815	Melon (DHL92) v3.6.1	carmedB0758
Carg16815	Watermelon (Charleston Gray)	carwcgB0730
Carg16815	Watermelon (97103) v2	carwmbB0788