CmaCh02G018130 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G018130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionU6 snRNA-associated Sm-like protein LSm2
LocationCma_Chr02 : 10067422 .. 10069617 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCACTCGTCGTGTTCCCTAATATCGTTTTCCCTTCTGTTTGTGATATAGGTCGGGCCGCATTTCGACCTTTGCCGGTCGTCGAACGTCGAAAGCAGATAGACTGAAGGCCGGCAGTTTAAATCTCTAGTGAAAATGGTAATTCCTCCTTCATTCAAGTACTGGTTTCCATCGTTTTAGGTTTTCGTTATTGTTAATCGTACTTTAGTGCTTAAGCCGTTGCTCCTTTTTGGTTTCATCTTATCGTGTCTCAGATCATTCACGGTTTCTAAAATCTCTGGCTTACATGCGTTCGGACTTTTATTTGGGTTTTTTTTTGTCAGTTGTTTTTCTCGTACTTCAAGGACTTGGTGGGCAGAGAGGTGACGGTTGAGTTGAAGAACGACCTAGCAATCAGAGGAACTTTGCACTCTGTAGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGGTATCTAACTTCTTTGCATAAATTATATTTAACCGATATATTTGGTTGATTATTTTATGCTCTCACGCATTCTGCTGACCTGCGCTGGAGTCTAGGGTGACTTCGATCTTGTTTTTCTCTGTTTACCATTTGTTATAGGCATCATTCTCCTCATTTCTGCTTCTTCTGTCCTCTAGTTACTATTTACTGCTGTTTTGATTCTAATAACTGTAAGGTTCTCTGGCGAGATGTATGATATGTGGTTATGGTTAACAGATTATTTGTACTGCCGTTTGTTACTGTCACCCTAAAATTTTAATTATAAATGTTGTTTCAATTGAGGACGTAGGTTGTCTTTTTCATCCTTTGGTATTTCTTGAATTTTCTCTTGGGAAAATTTTCAAGCTATTTTGTGGGCGGTCCCGATCCGGTGAAAATTTCAAGTGATCTTGTTGCTTGGTTAGAGTTCTTAGCAGGGATTTGAACTTACTACCTCTTGGGGAAAGTAAAATGCCTTGACCACTGAGTTGTACTCTTTTTCCTTTCTGATGATTGGAAGTGGGGAGGGTAACGAGGTTTAGGATTTTATTTGGTGCGAATTTTTTTTTGTTGTTATTTTTTTTGGGATCTTCCTTCTTCTGTTCCGGTCAATTGTGAGGACTTTAGTCCTCTTTTATTCTTGTGAACTAAAATTTCGATACAAGTCGAAATGGCAAGTATATTAAACTGAATCCATTATATTGTACATATGATGGTTGGTTTTAGTTTCTTTAACTTAGGAACCAAATTGAAACTTTTTCGAACTCAAGGACCAAAATTGTATTTTACCTTTGTTTGTTCTGGTTGGTTGCAAGTTAGCTAGTAAATGAAGGGATGATCTCGTGTACCTTTACACAGTTTGAATGAGATATAGATTTTTTGTTCTTGAGTCTAAATGTCAAGTAAATACATGGGTGAGAGCACTCGCATATTAATTATGCAAATATTTTAAATGCTGTTTATAAGTAGGGACTATCTTCAGACCAAGAACACTCATTTTGTATCAAGAACGTAGCTTTATAGATTATTTAACAAACACGTAGCCTAAGTACTGCGGTGGTCTTTTCTGATTGATTTCAAATCCTTCTGTGGCTCGGTTTATGTAGTAAGACCACAGTTTTTGGGGCCAGCATAATCATGCCATGGTGTGTAAACTTTGGTTTGAAGAGTAGGAATTTGATATTTTTCCCAGCCTCTTGTTTATGTTTGTTGTGGAATGGGTTTTGTGTTTTTTCTCCTTTCTTGATTCAACTCCAATCTAAAATGTCACTATGGTCACTAAATAAATCAGAACTGTGGGTAATAGAAAGACATTGATGTTGGTTGCTGATTTTATGATTGGTGAATTCTGTTAAGTGACCAGAGTGAAATTTTAGTTTGGATTAAAAGGTATCTTGTGACCAGAGTGAAATTTTAGATTGGGTGTGTGAACCTTGTTTAAAAGGCTATGTGCTCAGGATACATAAGAACGACTTTCGAAGCGTGTAGGAACTTGTTTCTCTCCCAGCCTCTAGTTGTGTTACCTGTAATTTTGTTGGTTTAGTTGTACTAATGGAGTTAAATTTTCTCATTTCAGCTTTCAGTGAGAAACTGCTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCGGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA

mRNA sequence

AGGCACTCGTCGTGTTCCCTAATATCGTTTTCCCTTCTGTTTGTGATATAGGTCGGGCCGCATTTCGACCTTTGCCGGTCGTCGAACGTCGAAAGCAGATAGACTGAAGGCCGGCAGTTTAAATCTCTAGTGAAAATGTTGTTTTTCTCGTACTTCAAGGACTTGGTGGGCAGAGAGGTGACGGTTGAGTTGAAGAACGACCTAGCAATCAGAGGAACTTTGCACTCTGTAGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCAGTGAGAAACTGCTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCGGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA

Coding sequence (CDS)

ATGTTGTTTTTCTCGTACTTCAAGGACTTGGTGGGCAGAGAGGTGACGGTTGAGTTGAAGAACGACCTAGCAATCAGAGGAACTTTGCACTCTGTAGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCAGTGAGAAACTGCTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCGGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA

Protein sequence

MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Homology
[Close]
BLAST of CmaCh02G018130 vs. Swiss-Prot
Match: LSM2_ARATH (Sm-like protein LSM2 OS=Arabidopsis thaliana GN=LSM2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.1e-46
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-33
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]
BLAST of CmaCh02G018130 vs. Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-33
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]
BLAST of CmaCh02G018130 vs. Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1  MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREAR 92
          FIRGSVVRYV LP + VD+E L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]
BLAST of CmaCh02G018130 vs. Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.5e-27
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN 
Sbjct: 1  MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRRE 90
          FIRGS VRYV L  + VD  LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]
BLAST of CmaCh02G018130 vs. TrEMBL
Match: A0A0B0N830_GOSAR (U6 snRNA-associated Sm-like protein LSm2 OS=Gossypium arboreum GN=F383_34743 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. TrEMBL
Match: A0A059A8I3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03403 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. TrEMBL
Match: A0A0D2QWG3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G083500 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. TrEMBL
Match: A0A067G038_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034490mg PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-46
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD++LLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. TrEMBL
Match: I3T5R8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. TAIR10
Match: AT1G03330.1 (AT1G03330.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 184.9 bits (468), Expect = 2.3e-47
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. NCBI nr
Match: gi|702500049|ref|XP_010038129.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Eucalyptus grandis])

HSP 1 Score: 193.0 bits (489), Expect = 2.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. NCBI nr
Match: gi|659122704|ref|XP_008461281.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. NCBI nr
Match: gi|719972875|ref|XP_010278777.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nelumbo nucifera])

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDI+LLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIDLLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. NCBI nr
Match: gi|357511085|ref|XP_003625831.1| (u6 snRNA-associated-like-Smprotein [Medicago truncatula])

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 93

[Close]
BLAST of CmaCh02G018130 vs. NCBI nr
Match: gi|593798712|ref|XP_007162394.1| (hypothetical protein PHAVU_001G148500g [Phaseolus vulgaris])

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1   MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 33  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 92

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 93  FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 125

The following BLAST results are available for this feature:
BLAST of CmaCh02G018130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM2_ARATH4.1e-4694.62Sm-like protein LSM2 OS=Arabidopsis thaliana GN=LSM2 PE=1 SV=1[more]
LSM2_HUMAN3.0e-3374.44U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1[more]
LSM2_MOUSE3.0e-3374.44U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=1 SV=1[more]
LSM2_DICDI1.1e-3067.03Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN... [more]
LSM2_YEAST5.5e-2766.29U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC... [more]
BLAST of CmaCh02G018130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B0N830_GOSAR1.7e-46100.00U6 snRNA-associated Sm-like protein LSm2 OS=Gossypium arboreum GN=F383_34743 PE=... [more]
A0A059A8I3_EUCGR1.7e-46100.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03403 PE=4 SV=1[more]
A0A0D2QWG3_GOSRA1.7e-46100.00Uncharacterized protein OS=Gossypium raimondii GN=B456_004G083500 PE=4 SV=1[more]
A0A067G038_CITSI4.8e-4697.85Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034490mg PE=4 SV=1[more]
I3T5R8_LOTJA4.8e-4698.92Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of CmaCh02G018130 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03330.12.3e-4794.62 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmaCh02G018130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|702500049|ref|XP_010038129.1|2.4e-46100.00PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Eucalyptus grandis][more]
gi|659122704|ref|XP_008461281.1|3.1e-4698.92PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Cucumis melo][more]
gi|719972875|ref|XP_010278777.1|5.3e-4698.92PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nelumbo nucifera][more]
gi|357511085|ref|XP_003625831.1|6.9e-4698.92u6 snRNA-associated-like-Smprotein [Medicago truncatula][more]
gi|593798712|ref|XP_007162394.1|6.9e-4698.92hypothetical protein PHAVU_001G148500g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR016654U6_snRNA_Lsm2
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G018130.1CmaCh02G018130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..71
score: 7.1
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
score: 1.3
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 3..92
score: 1.31
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRPIRSF016394Lsm2coord: 1..93
score: 6.0
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 1..93
score: 4.6
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..82
score: 7.0
NoneNo IPR availablePANTHERPTHR13829:SF2U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2coord: 1..93
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G018130CmoCh19G000080Cucurbita moschata (Rifu)cmacmoB598
CmaCh02G018130CmoCh02G018580Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G018130Cp4.1LG15g00010Cucurbita pepo (Zucchini)cmacpeB615
CmaCh02G018130Cp4.1LG05g01730Cucurbita pepo (Zucchini)cmacpeB647
CmaCh02G018130Carg16815Silver-seed gourdcarcmaB1051
CmaCh02G018130Carg26562Silver-seed gourdcarcmaB1290
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh02G018130CmaCh19G000080Cucurbita maxima (Rimu)cmacmaB450
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G018130Melon (DHL92) v3.6.1cmamedB659
CmaCh02G018130Cucumber (Chinese Long) v3cmacucB0750
CmaCh02G018130Watermelon (97103) v2cmawmbB655
CmaCh02G018130Watermelon (97103) v2cmawmbB657
CmaCh02G018130Wax gourdcmawgoB0730
CmaCh02G018130Wax gourdcmawgoB0741
CmaCh02G018130Wild cucumber (PI 183967)cmacpiB632
CmaCh02G018130Cucumber (Chinese Long) v2cmacuB628
CmaCh02G018130Melon (DHL92) v3.5.1cmameB577
CmaCh02G018130Watermelon (Charleston Gray)cmawcgB567
CmaCh02G018130Watermelon (Charleston Gray)cmawcgB568
CmaCh02G018130Watermelon (97103) v1cmawmB558
CmaCh02G018130Watermelon (97103) v1cmawmB563
CmaCh02G018130Bottle gourd (USVL1VR-Ls)cmalsiB582
CmaCh02G018130Cucumber (Gy14) v2cgybcmaB818