CmoCh18G006430 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G006430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChloroplast heterotrimeric G-protein complex protein
LocationCmo_Chr18 : 8108788 .. 8109822 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCCGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGCGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCTCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACGCTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCCTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTTGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTATGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCGAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAGATTTAA

mRNA sequence

ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCCGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGCGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCTCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACGCTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCCTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTTGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTATGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCGAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAGATTTAA

Coding sequence (CDS)

ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCCGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGCGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCTCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACGCTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCCTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTTGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTATGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCGAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAGATTTAA
Homology
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BLAST of CmoCh18G006430 vs. Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 5.6e-125
Identity = 192/309 (62.14%), Postives = 249/309 (80.58%), Query Frame = 1 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]
BLAST of CmoCh18G006430 vs. Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 9.5e-125
Identity = 190/309 (61.49%), Postives = 249/309 (80.58%), Query Frame = 1 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRR+LYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]
BLAST of CmoCh18G006430 vs. Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.2e-124
Identity = 191/309 (61.81%), Postives = 249/309 (80.58%), Query Frame = 1 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]
BLAST of CmoCh18G006430 vs. Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 5.2e-123
Identity = 190/309 (61.49%), Postives = 248/309 (80.26%), Query Frame = 1 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC NY  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKG 107

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           +  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 YSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR V VWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]
BLAST of CmoCh18G006430 vs. Swiss-Prot
Match: SNR40_DICDI (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 3.2e-112
Identity = 179/310 (57.74%), Postives = 231/310 (74.52%), Query Frame = 1 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRG 95
           G +RTS LE PIM L GH+  IY+ KFN  G+ +ASG  DKEIFLWNV+G+C NY VL+G
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           HK  +L+LHW+TD ++I +A  DK++  WD   G+ IK++ EHS  VNSCCP RRGPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 215
            SGSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 216 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 275
            + TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283

Query: 276 NLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCS 335
           NL+K SWS DG ++  GSSDR VY+WDT ++++ Y LPGH+G+VNE  FHP+EPI+ SCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343

Query: 336 SDKQIYLGEI 345
           SDK IYLGEI
Sbjct: 344 SDKTIYLGEI 353

[Close]
BLAST of CmoCh18G006430 vs. TrEMBL
Match: A0A0A0KTB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 710.7 bits (1833), Expect = 8.8e-202
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 1 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]
BLAST of CmoCh18G006430 vs. TrEMBL
Match: W9SFC3_9ROSA (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Morus notabilis GN=L484_000197 PE=4 SV=1)

HSP 1 Score: 690.3 bits (1780), Expect = 1.2e-195
Identity = 320/345 (92.75%), Postives = 335/345 (97.10%), Query Frame = 1 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV P+ GENAL+ VGPRPMEW+TVPYNAPQ PG NGKQRTSSLESPIMLLTGHQSAIYT
Sbjct: 1   MQVLPTEGENALSVVGPRPMEWATVPYNAPQAPGQNGKQRTSSLESPIMLLTGHQSAIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDK 120
           +KFNPAG+V+ASGSHD+EIFLW VHG+CKN+MVL+GHKNAVLDLHWTTDGSQI+SASPDK
Sbjct: 61  MKFNPAGTVVASGSHDREIFLWYVHGECKNFMVLKGHKNAVLDLHWTTDGSQIISASPDK 120

Query: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180
           TLRAWDVETGKQIKKMAEHSSFVNSCCP+RRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP
Sbjct: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAVSFSDASDKI+TGGIDNDVKVWDLRKGEVMMTLQGHQDMITGM LSPDGSYLL
Sbjct: 181 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMSLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVKI EG QHNFEKNLLKCSWSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKILEGQQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYM 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGHTGSVNE VFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHTGSVNESVFHPSEPIIGSCSSDKQIYLGEI 345

[Close]
BLAST of CmoCh18G006430 vs. TrEMBL
Match: V7CX72_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G114300g PE=4 SV=1)

HSP 1 Score: 689.9 bits (1779), Expect = 1.6e-195
Identity = 315/345 (91.30%), Postives = 333/345 (96.52%), Query Frame = 1 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV PS GE+AL+ VGPRPMEWSTVPYNAPQ PGPNGKQRTSSLESPIMLL+GHQS IYT
Sbjct: 1   MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSVIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDK 120
           +KFNPAGSV+ASGSHD+EIFLWNVHGDCKN+MVL+GHKNAVLDLHWTTDG+QIVSASPDK
Sbjct: 61  MKFNPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK 120

Query: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180
           T+RAWDVETGKQIKKM EH S+VNSCCP+RRGPPL+VSGSDDGTAKLWDMRQRG+IQTFP
Sbjct: 121 TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAV FSDASDKIFTGGIDNDVK+WDLRKGEV MTLQGHQDMIT MQLSPDGSYLL
Sbjct: 181 DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVK+FEGHQHNFEKNLLKC WSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKVFEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGH GSVNECVFHP+EPIVGSCSSDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI 345

[Close]
BLAST of CmoCh18G006430 vs. TrEMBL
Match: A0A0B2RQU6_GLYSO (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Glycine soja GN=glysoja_011221 PE=4 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 2.7e-195
Identity = 315/345 (91.30%), Postives = 333/345 (96.52%), Query Frame = 1 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV PS GE+AL+ VGPRPMEWSTVPYNAPQ PGPNGKQRTSSLESPIMLL+GHQSAIYT
Sbjct: 1   MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDK 120
           +KFNPAGSVIASGSHD+EIFLWNVHGDCKN+MVL+GHKNAVLDLHWTTDG+QIVSASPDK
Sbjct: 61  MKFNPAGSVIASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK 120

Query: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180
           T+RAWDVETGKQIKKM EH S+VNSCCP+RRGPPL+VSGSDDGTAKLWDMRQRG+IQTFP
Sbjct: 121 TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAV FSDASDKIFTGGIDNDVK+WDLRKGEV MTLQGHQDMIT MQLSPDGSYLL
Sbjct: 181 DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITAMQLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVK+ EGHQHNFEKNLLKC WSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGH GSVNECVFHP+EPI+GSCSSDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 345

[Close]
BLAST of CmoCh18G006430 vs. TrEMBL
Match: I1N8B6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G114900 PE=4 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 3.6e-195
Identity = 314/345 (91.01%), Postives = 333/345 (96.52%), Query Frame = 1 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV PS GE+AL+ VGPRPMEWSTVPYNAPQ PGPNGKQRTSSLESPIMLL+GHQSAIYT
Sbjct: 1   MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDK 120
           +KFNPAGSV+ASGSHD+EIFLWNVHGDCKN+MVL+GHKNAVLDLHWTTDG+QIVSASPDK
Sbjct: 61  MKFNPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK 120

Query: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180
           T+RAWDVETGKQIKKM EH S+VNSCCP+RRGPPL+VSGSDDGTAKLWDMRQRG+IQTFP
Sbjct: 121 TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAV FSDASDKIFTGGIDNDVK+WDLRKGEV MTLQGHQDMIT MQLSPDGSYLL
Sbjct: 181 DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITAMQLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVK+ EGHQHNFEKNLLKC WSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGH GSVNECVFHP+EPI+GSCSSDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 345

[Close]
BLAST of CmoCh18G006430 vs. TAIR10
Match: AT2G43770.1 (AT2G43770.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 660.2 bits (1702), Expect = 6.9e-190
Identity = 297/337 (88.13%), Postives = 322/337 (95.55%), Query Frame = 1 

Query: 8   ENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKFNPAGS 67
           EN  A  GPRPMEWSTVP++A QGPGPNGK RTSSLE+PIMLL+GH SA+YT+KFNPAG+
Sbjct: 7   ENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGT 66

Query: 68  VIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVE 127
           +IASGSHD+EIFLW VHGDCKN+MVL+GHKNA+LDLHWT+DGSQIVSASPDKT+RAWDVE
Sbjct: 67  LIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVE 126

Query: 128 TGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 187
           TGKQIKKMAEHSSFVNSCCPTRRGPPLI+SGSDDGTAKLWDMRQRGAIQTFPDKYQITAV
Sbjct: 127 TGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 186

Query: 188 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKL 247
           SFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTNGMD KL
Sbjct: 187 SFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246

Query: 248 CIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRI 307
           C+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDG+KVTAGSSDRMV++WDTTSRR 
Sbjct: 247 CVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRT 306

Query: 308 LYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           +YKLPGHTGSVNECVFHP+EPI+GSCSSDK IYLGEI
Sbjct: 307 IYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]
BLAST of CmoCh18G006430 vs. TAIR10
Match: AT3G49660.1 (AT3G49660.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 162.5 bits (410), Expect = 4.5e-40
Identity = 90/296 (30.41%), Postives = 154/296 (52.03%), Query Frame = 1 

Query: 50  LTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGD----CKNYMVLRGHKNAVLDLHW 109
           LT H  A+ ++KF+  G ++AS S DK I  + ++       +      GH+N + D+ +
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 110 TTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 169
           ++D   IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSP 289
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 290 DGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQI 340
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP+E ++ S S DK +
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309

[Close]
BLAST of CmoCh18G006430 vs. TAIR10
Match: AT4G02730.1 (AT4G02730.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 9.7e-35
Identity = 93/302 (30.79%), Postives = 151/302 (50.00%), Query Frame = 1 

Query: 50  LTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLR---GHKNAVLDLHWT 109
           L GH +AI  +KF+  G+++AS S DK + LW+      NY ++    GH + + DL W+
Sbjct: 39  LEGHTAAISCVKFSNDGNLLASASVDKTMILWSA----TNYSLIHRYEGHSSGISDLAWS 98

Query: 110 TDGSQIVSASPDKTLRAWDVETGKQ-IKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 169
           +D     SAS D TLR WD  +  + +K +  H++FV  C        LIVSGS D T +
Sbjct: 99  SDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFV-FCVNFNPPSNLIVSGSFDETIR 158

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +W+++    ++        I++V F+     I +   D   K+WD ++G  + TL     
Sbjct: 159 IWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDDKS 218

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSP 289
             ++  + SP+G ++L   +D  L    +  YA   + +K++ GH      N + C  S 
Sbjct: 219 PAVSFAKFSPNGKFILVATLDSTL---KLSNYAT-GKFLKVYTGHT-----NKVFCITSA 278

Query: 290 ----DGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS--DK 340
               +G  + +GS D  VY+WD  +R IL +L GHT +V     HP +  + S  +  DK
Sbjct: 279 FSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDK 326

[Close]
BLAST of CmoCh18G006430 vs. TAIR10
Match: AT5G08390.1 (AT5G08390.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-27
Identity = 58/210 (27.62%), Postives = 109/210 (51.90%), Query Frame = 1 

Query: 131 QIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSF 190
           ++++   HS+ VN     R+   ++V+G +D    LW + +  AI + +     I +V+F
Sbjct: 8   KLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTF 67

Query: 191 SDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCI 250
             +   +  G     +K+WDL + +V+ TL GH+     +   P G +  +  +D  L I
Sbjct: 68  DASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKI 127

Query: 251 WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILY 310
           WD+R    +  C+  ++GH      N+L+  ++PDG  + +G  D +V VWD T+ ++L+
Sbjct: 128 WDIR----KKGCIHTYKGHTRGV--NVLR--FTPDGRWIVSGGEDNVVKVWDLTAGKLLH 187

Query: 311 KLPGHTGSVNECVFHPSEPIVGSCSSDKQI 340
           +   H G +    FHP E ++ + S+DK +
Sbjct: 188 EFKSHEGKIQSLDFHPHEFLLATGSADKTV 209

[Close]
BLAST of CmoCh18G006430 vs. TAIR10
Match: AT5G52820.1 (AT5G52820.1 WD-40 repeat family protein / notchless protein, putative)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-27
Identity = 84/301 (27.91%), Postives = 144/301 (47.84%), Query Frame = 1 

Query: 50  LTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDG 109
           + GH  A+  + F+P G  +ASGS D  + LW+++ +   +   +GHKN VL + W+ DG
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDG 164

Query: 110 SQIVSASPDKTLRAWDVETGK-QIKKMAEHSSFVN--SCCPTRRGPPL--IVSGSDDGTA 169
             +VS S    +  W+ + G+ +   +  H  ++   S  P     P    V+ S DG A
Sbjct: 165 KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDA 224

Query: 170 KLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 229
           ++WD+  ++  I        +T V +      I+TG  D  +K+W+  +G+++  L+GH 
Sbjct: 225 RIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKLIRELKGHG 284

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKIFEGHQHNFEKNLLKCSW 289
             I  + LS +  Y+L  G       +D   R Y P     K  E  ++N  K       
Sbjct: 285 HWINSLALSTE--YVLRTG------AFDHTGRQYPPNEEKQKALE--RYNKTK-----GD 344

Query: 290 SPDGSKVTAGSSDRMVYVWD-TTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIY 342
           SP+  ++ +GS D  +++W+ + S++   +L GH   VN   F P    + S S DK + 
Sbjct: 345 SPE--RLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVR 386

[Close]
BLAST of CmoCh18G006430 vs. NCBI nr
Match: gi|659090442|ref|XP_008446018.1| (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo])

HSP 1 Score: 716.1 bits (1847), Expect = 3.0e-203
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 1 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]
BLAST of CmoCh18G006430 vs. NCBI nr
Match: gi|449435105|ref|XP_004135336.1| (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus])

HSP 1 Score: 710.7 bits (1833), Expect = 1.3e-201
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 1 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]
BLAST of CmoCh18G006430 vs. NCBI nr
Match: gi|1009112778|ref|XP_015870114.1| (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Ziziphus jujuba])

HSP 1 Score: 695.3 bits (1793), Expect = 5.5e-197
Identity = 321/345 (93.04%), Postives = 336/345 (97.39%), Query Frame = 1 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV P+ GENAL+ VGPRPMEWSTVPY+APQ PG +GKQRTSSLESPIMLL GHQSA+YT
Sbjct: 1   MQVAPTEGENALSIVGPRPMEWSTVPYSAPQAPGQSGKQRTSSLESPIMLLVGHQSAVYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDK 120
           +KFNPAG+VIASGSHDKEIFLWNVHGDCKN+MVL+GHKNA+LDLHWTTDGSQI+SASPDK
Sbjct: 61  MKFNPAGTVIASGSHDKEIFLWNVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK 120

Query: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180
           TLRAWDVETGKQIKKMAEHSSFVNSCCP+RRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP
Sbjct: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV MTLQGHQDMITGM LSPDGSYLL
Sbjct: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVTMTLQGHQDMITGMSLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSSDGSKVTAGSSDRMVYI 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTT+RRILYKLPGHTGSVNECVFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 WDTTTRRILYKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345

[Close]
BLAST of CmoCh18G006430 vs. NCBI nr
Match: gi|703117395|ref|XP_010101368.1| (U5 small nuclear ribonucleoprotein 40 kDa protein [Morus notabilis])

HSP 1 Score: 690.3 bits (1780), Expect = 1.8e-195
Identity = 320/345 (92.75%), Postives = 335/345 (97.10%), Query Frame = 1 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV P+ GENAL+ VGPRPMEW+TVPYNAPQ PG NGKQRTSSLESPIMLLTGHQSAIYT
Sbjct: 1   MQVLPTEGENALSVVGPRPMEWATVPYNAPQAPGQNGKQRTSSLESPIMLLTGHQSAIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDK 120
           +KFNPAG+V+ASGSHD+EIFLW VHG+CKN+MVL+GHKNAVLDLHWTTDGSQI+SASPDK
Sbjct: 61  MKFNPAGTVVASGSHDREIFLWYVHGECKNFMVLKGHKNAVLDLHWTTDGSQIISASPDK 120

Query: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180
           TLRAWDVETGKQIKKMAEHSSFVNSCCP+RRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP
Sbjct: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAVSFSDASDKI+TGGIDNDVKVWDLRKGEVMMTLQGHQDMITGM LSPDGSYLL
Sbjct: 181 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMSLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVKI EG QHNFEKNLLKCSWSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKILEGQQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYM 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGHTGSVNE VFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHTGSVNESVFHPSEPIIGSCSSDKQIYLGEI 345

[Close]
BLAST of CmoCh18G006430 vs. NCBI nr
Match: gi|593797892|ref|XP_007161984.1| (hypothetical protein PHAVU_001G114300g [Phaseolus vulgaris])

HSP 1 Score: 689.9 bits (1779), Expect = 2.3e-195
Identity = 315/345 (91.30%), Postives = 333/345 (96.52%), Query Frame = 1 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV PS GE+AL+ VGPRPMEWSTVPYNAPQ PGPNGKQRTSSLESPIMLL+GHQS IYT
Sbjct: 1   MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSVIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDK 120
           +KFNPAGSV+ASGSHD+EIFLWNVHGDCKN+MVL+GHKNAVLDLHWTTDG+QIVSASPDK
Sbjct: 61  MKFNPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK 120

Query: 121 TLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFP 180
           T+RAWDVETGKQIKKM EH S+VNSCCP+RRGPPL+VSGSDDGTAKLWDMRQRG+IQTFP
Sbjct: 121 TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAV FSDASDKIFTGGIDNDVK+WDLRKGEV MTLQGHQDMIT MQLSPDGSYLL
Sbjct: 181 DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVK+FEGHQHNFEKNLLKC WSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKVFEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGH GSVNECVFHP+EPIVGSCSSDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI 345

The following BLAST results are available for this feature:
BLAST of CmoCh18G006430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SNR40_HUMAN5.6e-12562.14U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=... [more]
SNR40_MOUSE9.5e-12561.49U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=... [more]
SNR40_BOVIN1.2e-12461.81U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 ... [more]
SNR40_PONAB5.2e-12361.49U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=... [more]
SNR40_DICDI3.2e-11257.74U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN... [more]
BLAST of CmoCh18G006430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTB1_CUCSA8.8e-20296.22Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588760 PE=4 SV=1[more]
W9SFC3_9ROSA1.2e-19592.75U5 small nuclear ribonucleoprotein 40 kDa protein OS=Morus notabilis GN=L484_000... [more]
V7CX72_PHAVU1.6e-19591.30Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G114300g PE=4 SV=1[more]
A0A0B2RQU6_GLYSO2.7e-19591.30U5 small nuclear ribonucleoprotein 40 kDa protein OS=Glycine soja GN=glysoja_011... [more]
I1N8B6_SOYBN3.6e-19591.01Uncharacterized protein OS=Glycine max GN=GLYMA_19G114900 PE=4 SV=1[more]
BLAST of CmoCh18G006430 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43770.16.9e-19088.13 Transducin/WD40 repeat-like superfamily protein[more]
AT3G49660.14.5e-4030.41 Transducin/WD40 repeat-like superfamily protein[more]
AT4G02730.19.7e-3530.79 Transducin/WD40 repeat-like superfamily protein[more]
AT5G08390.12.6e-2727.62 Transducin/WD40 repeat-like superfamily protein[more]
AT5G52820.13.3e-2727.91 WD-40 repeat family protein / notchless protein, putative[more]
BLAST of CmoCh18G006430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090442|ref|XP_008446018.1|3.0e-20397.09PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo][more]
gi|449435105|ref|XP_004135336.1|1.3e-20196.22PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus][more]
gi|1009112778|ref|XP_015870114.1|5.5e-19793.04PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Ziziphus jujuba][more]
gi|703117395|ref|XP_010101368.1|1.8e-19592.75U5 small nuclear ribonucleoprotein 40 kDa protein [Morus notabilis][more]
gi|593797892|ref|XP_007161984.1|2.3e-19591.30hypothetical protein PHAVU_001G114300g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR020472G-protein_beta_WD-40_rep
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042967 acyl-carrier-protein biosynthetic process
biological_process GO:0016573 histone acetylation
biological_process GO:0008150 biological_process
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G006430.1CmoCh18G006430.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatPFAMPF00400WD40coord: 184..209
score: 0.0083coord: 90..125
score: 4.9E-4coord: 46..82
score: 5.2E-6coord: 260..301
score: 2.2E-6coord: 214..251
score: 8.0E-6coord: 130..168
score: 4.4E-4coord: 307..341
score: 0
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 43..82
score: 4.7E-8coord: 304..343
score: 0.0016coord: 86..125
score: 5.2E-8coord: 258..301
score: 1.1E-6coord: 171..209
score: 3.2E-4coord: 128..168
score: 1.6E-7coord: 212..251
score: 1.
IPR001680WD40 repeatPROFILEPS50082WD_REPEATS_2coord: 219..253
score: 13.516coord: 311..344
score: 8.871coord: 135..177
score: 10.542coord: 93..134
score: 16.524coord: 184..218
score: 12.58coord: 50..83
score: 15.254coord: 280..310
score: 1
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 44..341
score: 6.4
IPR017986WD40-repeat-containing domainPROFILEPS50294WD_REPEATS_REGIONcoord: 50..344
score: 57
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 47..341
score: 4.97
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 112..126
score: -coord: 69..83
score: -coord: 196..210
score: -coord: 155..169
score: -coord: 288..302
scor
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 155..169
score: 4.1E-8coord: 112..126
score: 4.1E-8coord: 69..83
score: 4.
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 45..344
score: 9.4E
NoneNo IPR availablePANTHERPTHR22847:SF501U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINcoord: 45..344
score: 9.4E