Carg21214 (gene) Silver-seed gourd

Overview
NameCarg21214
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionU5 small nuclear ribonucleoprotein 40 kDa protein
LocationCucurbita_argyrosperma_scaffold_149 : 217868 .. 218902 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCGGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGCGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCGCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACACTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCGTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTACGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCAAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAAATTTAA

mRNA sequence

ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCGGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGCGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCGCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACACTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCGTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTACGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCAAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAAATTTAA

Coding sequence (CDS)

ATGCAAGTCCCTTCAGGAGGAGAAAATGCTTTGGCTACAGTTGGTCCTCGGCCAATGGAATGGTCCACTGTTCCATATAATGCTCCTCAAGGACCGGGGCCAAATGGGAAGCAGCGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACGGGCCATCAGAGCGCTATATATACATTAAAGTTTAATCCAGCTGGAAGCGTGATTGCTTCAGGGTCGCATGACAAGGAAATTTTTCTATGGAACGTACATGGGGATTGCAAGAACTATATGGTTTTGAGGGGGCATAAGAATGCTGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCGGATAAAACACTGAGAGCATGGGATGTCGAGACTGGAAAACAGATTAAGAAGATGGCCGAGCACTCGTCCTTTGTCAATTCATGTTGTCCTACAAGAAGAGGACCACCACTAATTGTCAGTGGATCGGACGATGGAACTGCGAAACTTTGGGACATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAATATCAGATAACAGCCGTAAGTTTCTCCGATGCATCAGATAAGATCTTCACAGGCGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTTACCAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATACGCGCCTCAAAACCGATGTGTCAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGCTGGTCTCCAGACGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTGTACGTATGGGATACTACTTCTCGACGAATCTTGTATAAGCTTCCTGGCCATACCGGATCTGTCAACGAGTGCGTGTTCCATCCAAGTGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGATATATCTCGGGGAAATTTAA

Protein sequence

MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Homology
[Close]
BLAST of Carg21214 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata])

HSP 1 Score: 618.6 bits (1594), Expect = 1.3e-173
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180
           XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD
Sbjct: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]
BLAST of Carg21214 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 616.7 bits (1589), Expect = 4.8e-173
Identity = 343/344 (99.71%), Postives = 343/344 (99.71%), Query Frame = 0 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLL GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180
           XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD
Sbjct: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]
BLAST of Carg21214 vs. NCBI nr
Match: XP_023542336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 612.1 bits (1577), Expect = 1.2e-171
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180
           XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD
Sbjct: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVM+TLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMITLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           N  DCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NXXDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]
BLAST of Carg21214 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo])

HSP 1 Score: 602.8 bits (1553), Expect = 7.2e-169
Identity = 327/344 (95.06%), Postives = 330/344 (95.93%), Query Frame = 0 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180
           XXXXXXX  KQIKKMAEHSSFVNSCCPTRRGPPLI       TAKLWDMRQRGAIQTFPD
Sbjct: 121 XXXXXXXTGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]
BLAST of Carg21214 vs. NCBI nr
Match: XP_004135336.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 hypothetical protein Csa_5G588760 [Cucumis sativus])

HSP 1 Score: 597.4 bits (1539), Expect = 3.0e-167
Identity = 324/344 (94.19%), Postives = 328/344 (95.35%), Query Frame = 0 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180
           XXXXXXX  KQIKKMAEHSSFVNSCCPTRRGPPLI       TAKLWDMRQRGAIQTFPD
Sbjct: 121 XXXXXXXTGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]
BLAST of Carg21214 vs. TAIR10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 447.2 bits (1149), Expect = 9.1e-126
Identity = 256/337 (75.96%), Postives = 273/337 (81.01%), Query Frame = 0 

Query: 8   ENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKFNPAGS 67
           EN  A  GPRPMEWSTVP++A QGPGPNGK RTSSLE+PIMLL+GH SA+YT+KFNPAG+
Sbjct: 7   ENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGT 66

Query: 68  VIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 127
           +IASGSHD+EIFLW VHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 67  LIASGSHDREIFLWRVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 126

Query: 128 XXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPDKYQITAV 187
           X KQIKKMAEHSSFVNSCCPTRRGPPLI       TAKLWDMRQRGAIQTFPDKYQITAV
Sbjct: 127 XGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 186

Query: 188 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKL 247
           SFSDA+DKIFT              GE  MTL+GHQD                       
Sbjct: 187 SFSDAADKIFTXXXXXXXXXXXXXXGEATMTLEGHQDTXXXXXXXXXXXXXXXXXXXXXX 246

Query: 248 CIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRI 307
                  YAPQNRCVKIFEGHQHNFEKNLLKCSWSPDG+KVTAGSSDRMV++WDTTSRR 
Sbjct: 247 XXXXXXXYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRT 306

Query: 308 LYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           +YKLPGHTGSVNECVFHP+EPI+GSCSSDK IYLGEI
Sbjct: 307 IYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]
BLAST of Carg21214 vs. TAIR10
Match: AT4G29830.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-14
Identity = 54/216 (25.00%), Postives = 93/216 (43.06%), Query Frame = 0 

Query: 130 KQIKKMAEHSSFVNSCCP-TRRGPPLIXXXXXXXTAKLWDMRQRGAIQT-FPDKYQITAV 189
           K I+   E S +  +  P T   P L+       T KLW   +   ++T       + A+
Sbjct: 7   KSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAAL 66

Query: 190 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYL-LTNGMDCK 249
           +   +     +  ID+ V+V+D+     +  L+     + GMQ  P G+ L +  G    
Sbjct: 67  AAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSAS 126

Query: 250 LCIWDM------------RPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSD 309
           + +WD             RP AP+          + + +K +L  +WSP+G ++  GS D
Sbjct: 127 VKLWDTASWRLISTLSIPRPDAPK-------PSDKTSSKKFVLSVAWSPNGKRLACGSMD 186

Query: 310 RMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIV 331
             + V+D    ++L++L GH   V   VF P +P V
Sbjct: 187 GTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRV 215

[Close]
BLAST of Carg21214 vs. TAIR10
Match: AT5G50230.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-14
Identity = 42/159 (26.42%), Postives = 73/159 (45.91%), Query Frame = 0 

Query: 163 TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGH 222
           T KLWD+ +     T        A+  S     +F+G +D ++++WD++ G+++  + GH
Sbjct: 333 TIKLWDLHKGYCTNTVLFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGH 392

Query: 223 QDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS 282
              +T + LS +G+ +LT+G D    ++D R                +    N  +   S
Sbjct: 393 SSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTL----EICGTLRASGNRLASNWSRSCIS 452

Query: 283 PDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNEC 322
           PD   V AGS+D  V+VW  +   I+  L   T  +  C
Sbjct: 453 PDDDYVAAGSADGSVHVWSLSKGNIVSILKEQTSPILCC 487

[Close]
BLAST of Carg21214 vs. TAIR10
Match: AT1G15440.1 (periodic tryptophan protein 2)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-14
Identity = 46/181 (25.41%), Postives = 76/181 (41.99%), Query Frame = 0 

Query: 166 LWDMRQRGAIQTFPDKY-QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQD 225
           +WD R    I      Y  +  V++S  S  + TG  DN VKVW++  G   +T   H +
Sbjct: 373 VWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTN 432

Query: 226 MITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPD 285
            +T +    D   LL+  +D  +  WD + Y                  +  +  +  P 
Sbjct: 433 AVTALHFMADNHSLLSASLDGTVRAWDFKRYXXXXXXXT-------PTPRQFVSLTADPS 492

Query: 286 GSKVTAGSSDRM-VYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGE 345
           G  V AG+ D   ++VW   + +I   L GH   V+  +F P   ++ S S D  + L +
Sbjct: 493 GDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWD 546

[Close]
BLAST of Carg21214 vs. TAIR10
Match: AT5G08560.1 (transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 65.1 bits (157), Expect = 9.8e-11
Identity = 38/158 (24.05%), Postives = 83/158 (52.53%), Query Frame = 0 

Query: 183 QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG 242
           +++ ++ +D    + +   D+ + ++D R+  V   ++  +DMIT   LS D  Y+L N 
Sbjct: 405 KVSDIAMTDDGKWLVSVCKDSVISLFD-REATVERLIE-EEDMITSFSLSNDNKYILVNL 464

Query: 243 MDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT 302
           ++ ++ +W++       + V  ++GH+ +    +  C      + + +GS D  VY+W  
Sbjct: 465 LNQEIRLWNIE---GDPKIVSRYKGHKRS-RFIIRSCFGGYKQAFIASGSEDSQVYIWHR 524

Query: 303 TSRRILYKLPGHTGSVNECVFHPSE-PIVGSCSSDKQI 340
           ++ +++ +LPGH G+VN   + P+   ++ S S D  I
Sbjct: 525 STGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTI 556

[Close]
BLAST of Carg21214 vs. Swiss-Prot
Match: sp|Q96DI7|SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.7e-79
Identity = 173/309 (55.99%), Postives = 216/309 (69.90%), Query Frame = 0 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXX 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC N  XXXX
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYAXXXX 107

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +++K++  H+SFVNSC P RRGP L+
Sbjct: 108 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 XXXXXXXTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
                  T KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +               ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISXXXXXXXXXXXXXXXKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+                        P+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLXXXXXXXXXXXXXXXXXXXXXXXXPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]
BLAST of Carg21214 vs. Swiss-Prot
Match: sp|Q2HJH6|SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.0e-78
Identity = 172/309 (55.66%), Postives = 216/309 (69.90%), Query Frame = 0 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXX 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC N  XXXX
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYAXXXX 108

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +++K++  H+SFVNSC P RRGP L+
Sbjct: 109 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 XXXXXXXTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
                  T KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +               ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISXXXXXXXXXXXXXXXKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+                        P+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLXXXXXXXXXXXXXXXXXXXXXXXXPFAPKERCVRIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]
BLAST of Carg21214 vs. Swiss-Prot
Match: sp|Q6PE01|SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.3e-78
Identity = 171/309 (55.34%), Postives = 214/309 (69.26%), Query Frame = 0 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXX 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC N  XXXX
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYAXXXX 108

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +++K++  H+SFVNSC P RRGP L+
Sbjct: 109 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 XXXXXXXTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
                  T KLWD+R++ A+QTF + YQ+ AV+F+D SD+I                  +
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIIXXXXXXXXXXXXXXXXXL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+                        P+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLXXXXXXXXXXXXXXXXXXXXXXXXPFAPKERCVKIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRR+LYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]
BLAST of Carg21214 vs. Swiss-Prot
Match: sp|Q5RF51|SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 8.9e-78
Identity = 171/309 (55.34%), Postives = 214/309 (69.26%), Query Frame = 0 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXX 95
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   D+ I LWNV+GDC N   XXX
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATXXX 107

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +++K++  H+SFVNSC P RRGP L+
Sbjct: 108 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 XXXXXXXTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
                  T KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +               ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISXXXXXXXXXXXXXXXKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+                        P+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLXXXXXXXXXXXXXXXXXXXXXXXXPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSS 335
           LL+CSWSPDGSK+ AGS+DR V VWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]
BLAST of Carg21214 vs. Swiss-Prot
Match: sp|Q55AR8|SNR40_DICDI (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.6e-71
Identity = 133/310 (42.90%), Postives = 172/310 (55.48%), Query Frame = 0 

Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXX 95
           G +RTS LE PIM L GH+  IY+ KFN  G+ +ASG  DKEIFLWNV+G+C N      
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLI 155
                                             + IK++ EHS  VNSCCP RRGPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 156 XXXXXXXTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 215
                  +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 216 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 275
            + TL                                       NR +K F G Q+NFEK
Sbjct: 224 PLYTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRNIKTFNGAQNNFEK 283

Query: 276 NLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCS 335
           NL+K SWS DG ++  GSSDR VY+WDT ++++ Y LPGH+G+VNE  FHP+EPI+ SCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343

Query: 336 SDKQIYLGEI 345
           SDK IYLGEI
Sbjct: 344 SDKTIYLGEI 353

[Close]
BLAST of Carg21214 vs. TrEMBL
Match: tr|A0A1S3BDK5|A0A1S3BDK5_CUCME (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 602.8 bits (1553), Expect = 4.7e-169
Identity = 327/344 (95.06%), Postives = 330/344 (95.93%), Query Frame = 0 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180
           XXXXXXX  KQIKKMAEHSSFVNSCCPTRRGPPLI       TAKLWDMRQRGAIQTFPD
Sbjct: 121 XXXXXXXTGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]
BLAST of Carg21214 vs. TrEMBL
Match: tr|A0A0A0KTB1|A0A0A0KTB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 2.0e-167
Identity = 324/344 (94.19%), Postives = 328/344 (95.35%), Query Frame = 0 

Query: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPD 180
           XXXXXXX  KQIKKMAEHSSFVNSCCPTRRGPPLI       TAKLWDMRQRGAIQTFPD
Sbjct: 121 XXXXXXXTGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]
BLAST of Carg21214 vs. TrEMBL
Match: tr|A0A2C9WGS7|A0A2C9WGS7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G016900 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 1.8e-160
Identity = 308/342 (90.06%), Postives = 319/342 (93.27%), Query Frame = 0 

Query: 3   VPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKF 62
           VP  G+N L+  GPRPMEWSTVPY  PQGPGPNGKQRTSSLESPIMLLTGHQSA+YT+KF
Sbjct: 4   VPREGDNPLSVSGPRPMEWSTVPYTGPQGPGPNGKQRTSSLESPIMLLTGHQSAVYTMKF 63

Query: 63  NPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           NPAG++IASGSHDKEIFLW VHG+CKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 64  NPAGNLIASGSHDKEIFLWYVHGECKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123

Query: 123 XXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFPDKY 182
           XXXX   KQIKKMAEHSSFVNSCCP+RRGPPLI       TAKLWDMRQRGAIQTFPDKY
Sbjct: 124 XXXXETGKQIKKMAEHSSFVNSCCPSRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKY 183

Query: 183 QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNG 242
           QITAV FSDASDKIFTGGIDNDVKVWDLRKGEV M L+GHQDMIT MQLSPDGSYLLTNG
Sbjct: 184 QITAVGFSDASDKIFTGGIDNDVKVWDLRKGEVTMKLEGHQDMITSMQLSPDGSYLLTNG 243

Query: 243 MDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT 302
           MDCKLCIWDMRPYAPQNRCVK+ EGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT
Sbjct: 244 MDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDT 303

Query: 303 TSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           TSRRILYKLPGHTGSVNECVFHP+EPIVGSCSSDKQIYLGEI
Sbjct: 304 TSRRILYKLPGHTGSVNECVFHPTEPIVGSCSSDKQIYLGEI 345

[Close]
BLAST of Carg21214 vs. TrEMBL
Match: tr|A0A1S3TC97|A0A1S3TC97_VIGRR (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106753980 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 6.9e-160
Identity = 314/345 (91.01%), Postives = 330/345 (95.65%), Query Frame = 0 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV PS GE+AL+ VGPRPMEWSTVPYNAPQ PGPNGKQRTSSLESPIMLL+GHQSAIYT
Sbjct: 1   MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           +KFNPAGSV+ASGSHD+EIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  MKFNPAGSVVASGSHDREIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFP 180
           XXXXXXXXXXKQIKKM EH S+VN+CCP+RRGPPL+ XXXXXX  KLWDMRQRG+IQTFP
Sbjct: 121 XXXXXXXXXXKQIKKMVEHLSYVNACCPSRRGPPLVVXXXXXXXXKLWDMRQRGSIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAV FSDASDKIFTGGIDNDVK+WDLRKGEV MTLQGHQDMITGMQLSPDGSYLL
Sbjct: 181 DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITGMQLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVK+ EGHQHNFEKNLLKC WSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGH GSVNECVFHP+EPI+GSC SDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCGSDKQIYLGEI 345

[Close]
BLAST of Carg21214 vs. TrEMBL
Match: tr|A0A0L9U747|A0A0L9U747_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g195800 PE=4 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 7.6e-159
Identity = 313/345 (90.72%), Postives = 329/345 (95.36%), Query Frame = 0 

Query: 1   MQV-PSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYT 60
           MQV PS GE+AL+ VGPRPMEWSTVPYNAPQ PGPNGKQRTSSLESPIMLL+GHQSAIYT
Sbjct: 1   MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT 60

Query: 61  LKFNPAGSVIASGSHDKEIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           +KFNPAGSV+ASGSHD+EIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  MKFNPAGSVVASGSHDREIFLWNVHGDCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXKQIKKMAEHSSFVNSCCPTRRGPPLIXXXXXXXTAKLWDMRQRGAIQTFP 180
           XXXXXXXXXXKQIKKM EH S+VN+CCP+RRGPPL+ XXXXXX  KLWDMRQRG+IQTFP
Sbjct: 121 XXXXXXXXXXKQIKKMVEHLSYVNACCPSRRGPPLVVXXXXXXXXKLWDMRQRGSIQTFP 180

Query: 181 DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLL 240
           DKYQITAV FSDASDKIFTGGIDNDVK+WDLRKGEV MTLQGHQDMITGMQLSPDGSYLL
Sbjct: 181 DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITGMQLSPDGSYLL 240

Query: 241 TNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYV 300
           TNGMDCKLCIWDMRPYAPQNRCVK+ EGHQHNFEKNLLKC WSPDGSKVTAGSSDRMVY+
Sbjct: 241 TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 301 WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 345
           WDTTSRRILYKLPGH GSVNECVFHP+E I+GSC SDKQIYLGEI
Sbjct: 301 WDTTSRRILYKLPGHNGSVNECVFHPNERIIGSCGSDKQIYLGEI 345

The following BLAST results are available for this feature:
BLAST of Carg21214 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945717.11.3e-173100.00U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata][more]
XP_022966914.14.8e-17399.71U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima][more]
XP_023542336.11.2e-17199.13U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo][more]
XP_008446018.17.2e-16995.06PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo][more]
XP_004135336.13.0e-16794.19PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >... [more]
BLAST of Carg21214 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43770.19.1e-12675.96Transducin/WD40 repeat-like superfamily protein[more]
AT4G29830.11.9e-1425.00Transducin/WD40 repeat-like superfamily protein[more]
AT5G50230.11.9e-1426.42Transducin/WD40 repeat-like superfamily protein[more]
AT1G15440.15.5e-1425.41periodic tryptophan protein 2[more]
AT5G08560.19.8e-1124.05transducin family protein / WD-40 repeat family protein[more]
BLAST of Carg21214 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q96DI7|SNR40_HUMAN4.7e-7955.99U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR... [more]
sp|Q2HJH6|SNR40_BOVIN1.0e-7855.66U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP... [more]
sp|Q6PE01|SNR40_MOUSE2.3e-7855.34U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn... [more]
sp|Q5RF51|SNR40_PONAB8.9e-7855.34U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR... [more]
sp|Q55AR8|SNR40_DICDI3.6e-7142.90U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX... [more]
BLAST of Carg21214 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BDK5|A0A1S3BDK5_CUCME4.7e-16995.06U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A0A0KTB1|A0A0A0KTB1_CUCSA2.0e-16794.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1[more]
tr|A0A2C9WGS7|A0A2C9WGS7_MANES1.8e-16090.06Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G016900 PE=4 SV=... [more]
tr|A0A1S3TC97|A0A1S3TC97_VIGRR6.9e-16091.01U5 small nuclear ribonucleoprotein 40 kDa protein OS=Vigna radiata var. radiata ... [more]
tr|A0A0L9U747|A0A0L9U747_PHAAN7.6e-15990.72Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g195800 PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21214-RACarg21214-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 155..169
score: 41.82
coord: 112..126
score: 37.9
coord: 69..83
score: 35.64
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 304..343
e-value: 0.0016
score: 27.7
coord: 43..82
e-value: 4.7E-8
score: 42.7
coord: 86..125
e-value: 5.2E-8
score: 42.6
coord: 258..301
e-value: 1.1E-6
score: 38.2
coord: 212..251
e-value: 1.6E-8
score: 44.3
coord: 128..168
e-value: 1.6E-7
score: 41.0
coord: 171..209
e-value: 3.2E-4
score: 30.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 260..301
e-value: 2.3E-6
score: 28.1
coord: 214..251
e-value: 6.7E-6
score: 26.6
coord: 90..125
e-value: 4.0E-4
score: 21.0
coord: 184..209
e-value: 0.0083
score: 16.9
coord: 130..168
e-value: 3.8E-4
score: 21.1
coord: 307..341
e-value: 0.059
score: 14.2
coord: 46..82
e-value: 4.5E-6
score: 27.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 93..134
score: 16.524
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..177
score: 10.542
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 311..344
score: 8.871
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 280..310
score: 11.01
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 50..83
score: 15.254
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 219..253
score: 13.516
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 184..218
score: 12.58
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 46..344
e-value: 3.0E-107
score: 359.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availablePANTHERPTHR44006FAMILY NOT NAMEDcoord: 15..344
NoneNo IPR availableCDDcd00200WD40coord: 50..341
e-value: 5.15654E-72
score: 226.833
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 69..83
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 196..210
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 112..126
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 155..169
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 288..302
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 50..344
score: 57.581
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILYSSF50978WD40 repeat-likecoord: 47..341