CmoCh17G013880 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G013880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionEndoplasmic reticulum, stress-associated Ramp4
LocationCmo_Chr17 : 10750118 .. 10751019 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATTTTCATTTTCTTTTGGATTCCATCTCAGATTACAACTGCGATGGATTATTGATCCGTTTCGCCTTTATAGGGTTCTTTTGTATGACTTTTGGCTACTTGCCTTCATTGCATCGCACCGTAATTGAGTGGTTAAAATATTTGTATTTTGGTCTTTAGACATTGTTGGACATGAGTAACTTGCATTCCCCAAATCTCTTGATTTGAAATGCACTTTAATTGGTCTAAATCTCTCGGTGAAAACTAACTGAGAAACACTAGTAGTAGTGAATAGAAATATTGGGCATTCAAATTGTTAAATATTGCTTCCTTTTTCGAGTTTAAGTTTCACGAAATGAACTTTTAGCAGAAGAATAATTGGAAATAAGTACTCTCTCTTGTACCGCTAATCTAAGTTGAGGGTCGTTTTTCGCAAGTTTCACTTTTAAATTTTAGTTCGTGTTAACCTGAGATTTTTGGTTGGACATGTGGTAAGGGGGCATTGTTTTGAATGAAAAAAGAATCTGAGCTTATGTTCATTTTGTTTTGGAATGTTGGTGTTACTGAATTGAGTATATACTAAATTATGATATGTTAGTAAATTATGATATGTTAGTAAATTTAAGCTTCTGCTTTTGTAGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGAAGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATGTAAGACTAATCCTTTTTATTATTTATATAATTTCCGCTACTATATTGTTTCTGAGCTTTGTTTATTCAACAGCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGA

mRNA sequence

ATGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGAAGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGA

Coding sequence (CDS)

ATGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGAAGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGA
Homology
[Close]
BLAST of CmoCh17G013880 vs. TrEMBL
Match: M5XI11_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014280mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.0e-24
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV +FE NI KRGAVPE T KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVEKFEKNITKRGAVPETTAKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. TrEMBL
Match: B9RMD3_RICCO (Stress associated endoplasmic reticulum protein, putative OS=Ricinus communis GN=RCOM_1079850 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.0e-24
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRG VPE T KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNITKRGTVPETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. TrEMBL
Match: A0A0A0KYW0_CUCSA (Stress associated endoplasmic reticulum protein OS=Cucumis sativus GN=Csa_4G011630 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.5e-24
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPE   KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGM 68
          TATGGGM
Sbjct: 61 TATGGGM 67

[Close]
BLAST of CmoCh17G013880 vs. TrEMBL
Match: A0A059B8I0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04633 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.5e-24
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRR ADRKV RFE NI+KRGAVPE T+KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRFADRKVDRFEKNIKKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TA  GGMA
Sbjct: 61 TAASGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. TrEMBL
Match: A0A0A0KD83_CUCSA (Stress associated endoplasmic reticulum protein OS=Cucumis sativus GN=Csa_6G087710 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 58/68 (85.29%), Postives = 64/68 (94.12%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV +FE NI KRG+VPE ++KKGK+YPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVGKFERNITKRGSVPETSVKKGKEYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. TAIR10
Match: AT1G27350.1 (AT1G27350.1 Ribosome associated membrane protein RAMP4)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-25
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTS+RLADRK+ +F+ NI KRG VPE T KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. TAIR10
Match: AT1G27330.1 (AT1G27330.1 Ribosome associated membrane protein RAMP4)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-25
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTS+RLADRK+ +F+ NI KRG VPE T KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. NCBI nr
Match: gi|657995126|ref|XP_008389884.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Malus domestica])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPE T KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNITKRGAVPETTAKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. NCBI nr
Match: gi|255547690|ref|XP_002514902.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Ricinus communis])

HSP 1 Score: 117.9 bits (294), Expect = 7.1e-24
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRG VPE T KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNITKRGTVPETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. NCBI nr
Match: gi|470149119|ref|XP_004310090.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 117.9 bits (294), Expect = 7.1e-24
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPE T KKGKDYPVGP+LLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNITKRGAVPETTAKKGKDYPVGPILLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATTGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. NCBI nr
Match: gi|596217240|ref|XP_007223937.1| (hypothetical protein PRUPE_ppa014280mg [Prunus persica])

HSP 1 Score: 117.9 bits (294), Expect = 7.1e-24
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV +FE NI KRGAVPE T KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVEKFEKNITKRGAVPETTAKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]
BLAST of CmoCh17G013880 vs. NCBI nr
Match: gi|702449553|ref|XP_010025308.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Eucalyptus grandis])

HSP 1 Score: 117.5 bits (293), Expect = 9.3e-24
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRR ADRKV RFE NI+KRGAVPE T+KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRFADRKVDRFEKNIKKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TA  GGMA
Sbjct: 61 TAASGGMA 68

The following BLAST results are available for this feature:
BLAST of CmoCh17G013880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G013880 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XI11_PRUPE5.0e-2486.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014280mg PE=4 SV=1[more]
B9RMD3_RICCO5.0e-2486.76Stress associated endoplasmic reticulum protein, putative OS=Ricinus communis GN... [more]
A0A0A0KYW0_CUCSA6.5e-2488.06Stress associated endoplasmic reticulum protein OS=Cucumis sativus GN=Csa_4G0116... [more]
A0A059B8I0_EUCGR6.5e-2485.29Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04633 PE=4 SV=1[more]
A0A0A0KD83_CUCSA1.1e-2385.29Stress associated endoplasmic reticulum protein OS=Cucumis sativus GN=Csa_6G0877... [more]
BLAST of CmoCh17G013880 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G27350.11.1e-2580.88 Ribosome associated membrane protein RAMP4[more]
AT1G27330.11.1e-2580.88 Ribosome associated membrane protein RAMP4[more]
BLAST of CmoCh17G013880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657995126|ref|XP_008389884.1|3.2e-2488.24PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Malus domesti... [more]
gi|255547690|ref|XP_002514902.1|7.1e-2486.76PREDICTED: stress-associated endoplasmic reticulum protein 2 [Ricinus communis][more]
gi|470149119|ref|XP_004310090.1|7.1e-2486.76PREDICTED: stress-associated endoplasmic reticulum protein 2 [Fragaria vesca sub... [more]
gi|596217240|ref|XP_007223937.1|7.1e-2486.76hypothetical protein PRUPE_ppa014280mg [Prunus persica][more]
gi|702449553|ref|XP_010025308.1|9.3e-2485.29PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Eucalyptus gr... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010580ER_stress-assoc
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G013880.1CmoCh17G013880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPANTHERPTHR15601STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4coord: 2..68
score: 2.0
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 5..62
score: 1.2
NoneNo IPR availablePANTHERPTHR15601:SF4SUBFAMILY NOT NAMEDcoord: 2..68
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G013880CmaCh08G001810Cucurbita maxima (Rimu)cmacmoB891
CmoCh17G013880Cp4.1LG17g10720Cucurbita pepo (Zucchini)cmocpeB347
CmoCh17G013880Bhi12G002187Wax gourdcmowgoB0456
CmoCh17G013880Bhi01G002862Wax gourdcmowgoB0479
CmoCh17G013880Carg11603Silver-seed gourdcarcmoB0021
CmoCh17G013880Carg05010Silver-seed gourdcarcmoB0114
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh17G013880CmoCh08G001850Cucurbita moschata (Rifu)cmocmoB315
The following block(s) are covering this gene:

None