Carg11603 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11603
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Endoplasmic reticulum, stress-associated Ramp4
Location	Cucurbita_argyrosperma_scaffold_083 : 898300 .. 899598 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTCCTCTGTATCAGAGCGGTGACCGGAGAGAAGACTCGCCGGCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCTAATCCCCTCGGCGCTTATTTGTGTCTCCGGCTACCTAATTTCCTGCCAAAATCATGGTAATTTTCATTTTCTTTTGGATTCCATCTCAGATTACAACTGCGATGGATTATTGATCCGTTTCGCCTTTATAGGGCTCTTTTGTGTGACTTTTGGCTACTTGCCTTCATTGCATCGCACCGTAATTAAGTGGTTAAAATATTTGTATTTTGGTCTTTAGACATTGTTGGACATGAGTAATTTGTATTCCCCAAATCTCTTGATTTGAAATGCACTTTAATTGGTCTAAATCTCTCGATGAAAACTAACTGAGAAACACTAGTAGTCGTGAATAGAAATATTGGGCATTCAAATTGTTAAATATTGCTTCCTTTTTCGAGTTTAAGTTTCACGAAATGAACTTTTAGCAGAAGAATAATTGGAAACAAGTACTCTCTCTTGTACCGCTAATCTAAGTTGAGGGTCGTTTTTAGCAAGTTTCACTTTTAAATTTTAGTTCGTGTTAACCTGAGATTTTTGGTTGGACATGTGTAAGGGGGCATTGTTTTAAATGAAAAAAGAATCTGAGCTTATGTTCATTTTGTTTTGGAATGTTAGTGTTACTGAATTGAGTATATACTAAATTATGATATGTTAGTAAATTTAAGCTTCTGCTTTTGTAGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGACGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATGTAAGACTAATCCTTTTTATTATTTATATAATTTCCGCTACTATATTGTTTCTGAGCTTTGTTTATTCAACAGCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGATGTGATGATCTGATTTTTGGATGCTGTTACAGATTCATGCTGTCCTCTATTTCCTTTATGATGAACACAAAAGAATTTTGACAATAGAATTGTTACAGTTCTCTTTTGTAACAATTGCTTGTAATCTAATATAGTTTCACTTACCCGATTAAGAGTTTGAACGTTTGAATTTTATCTTATTTCACCGGTTGAACTATTTTCTTATACAATGAAAATGGGTGGATGGCAGGACAAGAGGAGGAAGAAAACAAAGAACAAAAAAAGTAGAATAGAAATAATAGT

mRNA sequence

AATGTCCTCTGTATCAGAGCGGTGACCGGAGAGAAGACTCGCCGGCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCTAATCCCCTCGGCGCTTATTTGTGTCTCCGGCTACCTAATTTCCTGCCAAAATCATGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGACGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGATGTGATGATCTGATTTTTGGATGCTGTTACAGATTCATGCTGTCCTCTATTTCCTTTATGATGAACACAAAAGAATTTTGACAATAGAATTGTTACAGTTCTCTTTTGTAACAATTGCTTGTAATCTAATATAGTTTCACTTACCCGATTAAGAGTTTGAACGTTTGAATTTTATCTTATTTCACCGGTTGAACTATTTTCTTATACAATGAAAATGGGTGGATGGCAGGACAAGAGGAGGAAGAAAACAAAGAACAAAAAAAGTAGAATAGAAATAATAGT

Coding sequence (CDS)

ATGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGACGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGA

Protein sequence

MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGGGMA

Homology

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_023540285.1 (stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 4.2e-28
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_022953939.1 (probable stress-associated endoplasmic reticulum protein [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 7.1e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFESNIRKRGAVPE TLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR
Sbjct: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_022155455.1 (stress-associated endoplasmic reticulum protein 2-like [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFE NI KRGAVPETT+KKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_022956326.1 (stress-associated endoplasmic reticulum protein 2-like [Cucurbita moschata] >XP_022979456.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita maxima] >XP_023526291.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPETT KKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_021285535.1 (stress-associated endoplasmic reticulum protein 2-like [Herrania umbratica])

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPETT KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNITKRGAVPETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TAIR10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-26
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTS+RLADRK+ +F+ NI KRG VPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TAIR10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-26
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTS+RLADRK+ +F+ NI KRG VPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. Swiss-Prot
Match: sp|Q3T073|SERP2_BOVIN (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 6  RLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGG 65
          R+A+ K      NI +RG V +T   + + YPVGP LL  FVFVV GS++FQ+I++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Carg11603 vs. Swiss-Prot
Match: sp|Q8N6R1|SERP2_HUMAN (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 6  RLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGG 65
          R+A+ K      NI +RG V +T   + + YPVGP LL  FVFVV GS++FQ+I++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Carg11603 vs. Swiss-Prot
Match: sp|Q6TAW2|SERP2_MOUSE (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 6  RLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGG 65
          R+A+ K      NI +RG V +T   + + YPVGP LL  FVFVV GS++FQ+I++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Carg11603 vs. TrEMBL
Match: tr|A0A2N9HFG7|A0A2N9HFG7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38303 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNIMKRGAVPETTAKKGKDYPVGPVLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TrEMBL
Match: tr|M5XI11|M5XI11_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G224500 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV +FE NI KRGAVPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVEKFEKNITKRGAVPETTAKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TrEMBL
Match: tr|A0A2I4FYQ4|A0A2I4FYQ4_9ROSI (stress-associated endoplasmic reticulum protein 2-like OS=Juglans regia OX=51240 GN=LOC109003195 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPETT KKGKDYPVGP+LLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPVLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TrEMBL
Match: tr|B9RMD3|B9RMD3_RICCO (Stress associated endoplasmic reticulum protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1079850 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRG VPETT KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNITKRGTVPETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TrEMBL
Match: tr|A0A059B8I0|A0A059B8I0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04633 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRR ADRKV RFE NI+KRGAVPETT+KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRFADRKVDRFEKNIKKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TA  GGMA
Sbjct: 61 TAASGGMA 68

The following BLAST results are available for this feature:

BLAST of Carg11603 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540285.1	4.2e-28	98.53	stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pe...	[more]
XP_022953939.1	7.1e-28	98.53	probable stress-associated endoplasmic reticulum protein [Cucurbita moschata]	[more]
XP_022155455.1	1.7e-26	94.12	stress-associated endoplasmic reticulum protein 2-like [Momordica charantia]	[more]
XP_022956326.1	1.5e-25	92.65	stress-associated endoplasmic reticulum protein 2-like [Cucurbita moschata] >XP_...	[more]
XP_021285535.1	7.3e-25	89.71	stress-associated endoplasmic reticulum protein 2-like [Herrania umbratica]	[more]

BLAST of Carg11603 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27350.1	1.6e-26	82.35	Ribosome associated membrane protein RAMP4	[more]
AT1G27330.1	1.6e-26	82.35	Ribosome associated membrane protein RAMP4	[more]

BLAST of Carg11603 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3T073\|SERP2_BOVIN	2.0e-05	45.00	Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2...	[more]
sp\|Q8N6R1\|SERP2_HUMAN	2.0e-05	45.00	Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER...	[more]
sp\|Q6TAW2\|SERP2_MOUSE	2.0e-05	45.00	Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se...	[more]

BLAST of Carg11603 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9HFG7\|A0A2N9HFG7_FAGSY	8.3e-25	89.71	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38303 PE=4 SV=1	[more]
tr\|M5XI11\|M5XI11_PRUPE	1.4e-24	88.24	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G224500 PE=4 SV=1	[more]
tr\|A0A2I4FYQ4\|A0A2I4FYQ4_9ROSI	1.4e-24	88.24	stress-associated endoplasmic reticulum protein 2-like OS=Juglans regia OX=51240...	[more]
tr\|B9RMD3\|B9RMD3_RICCO	1.4e-24	88.24	Stress associated endoplasmic reticulum protein, putative OS=Ricinus communis OX...	[more]
tr\|A0A059B8I0\|A0A059B8I0_EUCGR	1.8e-24	86.76	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04633 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum

Vocabulary: **INTERPRO**
Term	Definition
IPR010580	ER_stress-assoc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11603-RA	Carg11603-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 5..62 e-value: 1.1E-22 score: 79.7
IPR010580	Stress-associated endoplasmic reticulum protein	PANTHER	PTHR15601	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4	coord: 1..67
None	No IPR available	PANTHER	PTHR15601:SF5	SUBFAMILY NOT NAMED	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11603	CmaCh08G001810	Cucurbita maxima (Rimu)	carcmaB0022
Carg11603	CmoCh17G013880	Cucurbita moschata (Rifu)	carcmoB0021
Carg11603	CmoCh08G001850	Cucurbita moschata (Rifu)	carcmoB0023
Carg11603	Cp4.1LG17g10720	Cucurbita pepo (Zucchini)	carcpeB0021
Carg11603	Bhi12G002187	Wax gourd	carwgoB0013

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11603	Carg05010	Silver-seed gourd	carcarB010

The following block(s) are covering this gene:

None