CmoCh17G012860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Far-red impaired responsive (FAR1) family protein
Location	Cmo_Chr17 : 10105393 .. 10107628 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTGTTTGCCAAAGATCTCCATTTCAGCGACTGAAAGCTTCTCGATTCAAGATTCACTATACACCGACCGGAAACACAGAAGAAATGAGATTGAGCTCCGAAGAATTCTTGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAGTCCTACCTTCGTGTATTGGGAGAAATCAAAGTGAGTTTCTAGATTCCGCATTCTTCAGATTGTTCTTACGGCAATCGCCATCAATTTACTCTATTCCCGCTTCGATTCTTCGAAGTAGTATCTATTTCTCTTCCATAGTTGACGAATTCGGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGCGATCGAGGATGGAGATGCTGTAGAAAACCCTAGCGGGAAGCCTTTGGCCAGAATAGTTTCTGAAGCTGAGGCAACTGCGACTAATATTTCAGATACTGAGCCATATGTAGGTATGGAGTTTGAATCTGAGGAGTCTGCCAAGGTTTTCTACGATGCATATGCTTCACGACTTGGTTTTGTTATACGCGTTGATGCATTTCGTCGGTCCATGCGTGATGGTTCCGTTGTTTGGCGACGACTTGTTTGTAACAAAGAGGGGTTTCGCAAGTTTCGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTATAACACGAGAAGGATGTAAGGCAATGGTTGTTGTAAAGAAAGAGAAATCTGGAAAATGGATTGTAACGAAGTTCGTCAAGGATCACAATCATCCACTGATTGTTACTCCTGCCAGTGCTCGTCGAAACGTTCTTCTATCACAGACACGGGTGAGGACTTACTTTGATTCACTTTGTGTTCATTTACGCTGAGATCATGTGTTTTTCTAGTTTCTTAACTCATTTTCTAAGTGTTCTACCTTTGATTCAATGATGTACTTCAGCTTTCCAAGTTCATTTGCTTCAAAAAGAGCAAATAGGTATCATTTTATTGTTGAATTTCTTTGGTGTGGTGTGTGGCCTCATGTTCTGATCAGATCATCCATCTTGAGATTTTTTGAATGACTTAGAATTGATCGGAGCCACTGTATAGCCACTCTAGACTAGAAATTTTTTAGTGTTATAGTGCTTGTTTCAAACCATATAGTGGTTTCCTCCATATGCTTGGACGTTTCTTCATGAACCGTAGTTTTATATTGGCAAACTTGGTCTTACTGTCTTCATCTTCCATTTTTGAAGGCTGTTGTATTTTTAAGTGGGTCGTGAGATCCTACGTTGGTTGGATTGGAGAACAAAGAATGTGGAAACCTCTCCCTAGTAAACGCGTTTTAAAACCTTGAGGGGAAACTTGGAAAGGAAAGCCCAAAGAGGACAATACCTGCTAGTGATGGACTTGGTCTCTGAAAAATAGTATCAGAGCTAGACACCGAGCGATGTGCCAGCGAGGAGGTTGGGCTCCAAAGGGGGATTGGGGGTCCCATGTCGATTGGAGAGGGGAACTAGTGCCAGCGAGGACGCTGATCGTGGATTGTGAGATCTCACCTCGGTTGGAGAGAGGAACGAAACATTCTTTATAAGGGTGGGAAAACCTCTTTCTAGTAGATGTCTTTTAAAACCTTAAGGGGAAGCTCAAAAGGAAAAGTCCAAAGAGGACAATATATGCTAGCGGTTAACTTGGAGTATTACATCCTACTTCCATTAGAGGTAAGGCTCCAAGCAGATAAACCATGTCGTGTGGTTTTGAGCGTTGTCTTGCATCTTATTGTAATGACAAATGTACTTCATTAATGACCTCTGTCCTAGACAACAAGCTTCACAGTCCTTTGATTTTACACAATCTTCAAAAGCTTCACTATAGTGAGATATGCTATCTTGGCTTTTGAGGTCGAAGGATCAATCTCCAACACATGCTCCACATGTTTCTGCAGTGTCTGTGTGCTGTACTGAATCCCTTCCCCCATAGCGTCTTGATTTTTACCTCCTTTTTCGACACATGAACTCAATATAGTGTCCAAGATACATTGTTTATATATCTTCATGTTTCTGTTACTATTATTTCAGGATGAGAAAGATGCAAAAATTCGAGAATTAACTGCCAAACTGCAGCTAGAACGAAAGCGATGCGCAGCTTATCAAGAACAGCTTGCCATGATTTTAAGAGACATGGAGGATCACTCGAATCATCTGGCAATAAACATAGATGACATTGTTCAAAGTGTGAAGGATATTGAATCAAAAAGCAATACATTTTCAAATAGCTAA

mRNA sequence

ATGCACTGTTTGCCAAAGATCTCCATTTCAGCGACTGAAAGCTTCTCGATTCAAGATTCACTATACACCGACCGGAAACACAGAAGAAATGAGATTGAGCTCCGAAGAATTCTTGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAGTCCTACCTTCGTGTATTGGGAGAAATCAAATATCTATTTCTCTTCCATAGTTGACGAATTCGGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGCGATCGAGGATGGAGATGCTGTAGAAAACCCTAGCGGGAAGCCTTTGGCCAGAATAGTTTCTGAAGCTGAGGCAACTGCGACTAATATTTCAGATACTGAGCCATATGTAGGTATGGAGTTTGAATCTGAGGAGTCTGCCAAGGTTTTCTACGATGCATATGCTTCACGACTTGGTTTTGTTATACGCGTTGATGCATTTCGTCGGTCCATGCGTGATGGTTCCGTTGTTTGGCGACGACTTGTTTGTAACAAAGAGGGGTTTCGCAAGTTTCGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTATAACACGAGAAGGATGTAAGGCAATGGTTGTTGTAAAGAAAGAGAAATCTGGAAAATGGATTGTAACGAAGTTCGTCAAGGATCACAATCATCCACTGATTGTTACTCCTGCCAGTGCTCGTCGAAACGTTCTTCTATCACAGACACGGGATGAGAAAGATGCAAAAATTCGAGAATTAACTGCCAAACTGCAGCTAGAACGAAAGCGATGCGCAGCTTATCAAGAACAGCTTGCCATGATTTTAAGAGACATGGAGGATCACTCGAATCATCTGGCAATAAACATAGATGACATTGTTCAAAGTGTGAAGGATATTGAATCAAAAAGCAATACATTTTCAAATAGCTAA

Coding sequence (CDS)

ATGCACTGTTTGCCAAAGATCTCCATTTCAGCGACTGAAAGCTTCTCGATTCAAGATTCACTATACACCGACCGGAAACACAGAAGAAATGAGATTGAGCTCCGAAGAATTCTTGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAGTCCTACCTTCGTGTATTGGGAGAAATCAAATATCTATTTCTCTTCCATAGTTGACGAATTCGGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGCGATCGAGGATGGAGATGCTGTAGAAAACCCTAGCGGGAAGCCTTTGGCCAGAATAGTTTCTGAAGCTGAGGCAACTGCGACTAATATTTCAGATACTGAGCCATATGTAGGTATGGAGTTTGAATCTGAGGAGTCTGCCAAGGTTTTCTACGATGCATATGCTTCACGACTTGGTTTTGTTATACGCGTTGATGCATTTCGTCGGTCCATGCGTGATGGTTCCGTTGTTTGGCGACGACTTGTTTGTAACAAAGAGGGGTTTCGCAAGTTTCGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTATAACACGAGAAGGATGTAAGGCAATGGTTGTTGTAAAGAAAGAGAAATCTGGAAAATGGATTGTAACGAAGTTCGTCAAGGATCACAATCATCCACTGATTGTTACTCCTGCCAGTGCTCGTCGAAACGTTCTTCTATCACAGACACGGGATGAGAAAGATGCAAAAATTCGAGAATTAACTGCCAAACTGCAGCTAGAACGAAAGCGATGCGCAGCTTATCAAGAACAGCTTGCCATGATTTTAAGAGACATGGAGGATCACTCGAATCATCTGGCAATAAACATAGATGACATTGTTCAAAGTGTGAAGGATATTGAATCAAAAAGCAATACATTTTCAAATAGCTAA

Homology

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BLAST of CmoCh17G012860 vs. Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.3e-31
Identity = 71/147 (48.30%), Postives = 97/147 (65.99%), Query Frame = 1


Query: 87  AIEDGDAVENP---SGKPLA----RIVSEAEATATNISDTEPYVGMEFESEESAKVFYDA 146
           A++D D +++P    G  L           E  A ++ D EPY G+EFESEE+AK FY++
Sbjct: 32  ALDDDDMLDSPIMPCGNGLVGNSGNYFPNQEEEACDLLDLEPYDGLEFESEEAAKAFYNS 91

Query: 147 YASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENR---KPRAITREGCK 206
           YA R+GF  RV + RRS RDG+++ R+ VC KEGFR    KR+++R   +PR ITR GCK
Sbjct: 92  YARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCK 151

Query: 207 AMVVVKKEKSGKWIVTKFVKDHNHPLI 224
           A + VK + SGKW+V+ FVKDHNH L+
Sbjct: 152 ASLSVKMQDSGKWLVSGFVKDHNHELV 178

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BLAST of CmoCh17G012860 vs. Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.0e-18
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 117 SDTEPYVGMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRK 176
           S  EPYVG+EF++ E A+ FY+AYA+R GF +R     RS  DG+V  RR VC+KEGF  
Sbjct: 39  SGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF-- 98

Query: 177 FRPKRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPL 223
                      +  +R GC A + V++  +GKW++ +  K+HNH L
Sbjct: 99  -----------QLNSRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131

[Close]

BLAST of CmoCh17G012860 vs. Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.6e-17
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 117 SDTEPYVGMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRK 176
           S  EPYVG+EF++ E A+ +Y++YA+R GF +R     RS  DG+V  RR VC+KEGF  
Sbjct: 24  SGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF-- 83

Query: 177 FRPKRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPL 223
                      +  +R GC A + V++  +GKW++ +  K+HNH L
Sbjct: 84  -----------QLNSRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116

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BLAST of CmoCh17G012860 vs. Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-13
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 124 GMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSE 183
           GM+FES+E+A  FY  YA  +GF I + A RRS R G  +  ++ C++ G ++   +++ 
Sbjct: 41  GMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKR---EKAT 100

Query: 184 NRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPL 223
              PR+  + GCKA + +K+++  KW++  FVK+HNH +
Sbjct: 101 AINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEI 136

[Close]

BLAST of CmoCh17G012860 vs. Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-13
Identity = 55/198 (27.78%), Postives = 98/198 (49.49%), Query Frame = 1


Query: 118 DTEPYVGMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKF 177
           D EP  G++F++ E+A +FY  YA  +GF   +   RRS +    +  +  C++ G    
Sbjct: 48  DLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPE 107

Query: 178 RPKRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPLIVTPASA-----RRN 237
                 + +   + +  CKA + VK+   GKWI+ +FVKDHNH L+  PA A     +RN
Sbjct: 108 SESSGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELL--PALAYHFRIQRN 167

Query: 238 VLLSQTRD-EKDAKIRELTAKLQLERKRCAAYQEQLAMILR----DMEDHSNHLAINIDD 297
           V L++  + +    + E T K+ +E  R +   + +  +L+       D   +LA+   D
Sbjct: 168 VKLAEKNNIDILHAVSERTKKMYVEMSRQSGGYKNIGSLLQTDVSSQVDKGRYLALEEGD 227

Query: 298 ---IVQSVKDIESKSNTF 303
              +++  K I+ ++  F
Sbjct: 228 SQVLLEYFKRIKKENPKF 243

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BLAST of CmoCh17G012860 vs. TrEMBL
Match: A0A0A0KA59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372900 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 5.5e-99
Identity = 186/225 (82.67%), Postives = 208/225 (92.44%), Query Frame = 1


Query: 81  VDGIPTAIEDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAY 140
           +DGIP+ +   + VE+PSGK  AR V+EAEA  +N SDTEP+VGMEFESEES KVFYDAY
Sbjct: 1   MDGIPSVL---NVVEDPSGKDFARAVTEAEAITSNNSDTEPFVGMEFESEESVKVFYDAY 60

Query: 141 ASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVV 200
           ASRLGF++RVDAFRRSMRDG+VVWRRLVCNKEGFRKF+PKRSENRKPRA+TREGCKAMVV
Sbjct: 61  ASRLGFIMRVDAFRRSMRDGAVVWRRLVCNKEGFRKFKPKRSENRKPRAVTREGCKAMVV 120

Query: 201 VKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRC 260
           VKKEK+GKW+VTKFVKDHNHPLIVTPASARRNVLLS TRDEKDAKIRELTA+LQ ERKRC
Sbjct: 121 VKKEKTGKWVVTKFVKDHNHPLIVTPASARRNVLLSHTRDEKDAKIRELTAELQQERKRC 180

Query: 261 AAYQEQLAMILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSNS 306
           AAYQEQLAMIL DME+HSNHLA NID+I+QSV+DIES++N FSNS
Sbjct: 181 AAYQEQLAMILGDMEEHSNHLARNIDNIIQSVRDIESENNAFSNS 222

[Close]

BLAST of CmoCh17G012860 vs. TrEMBL
Match: M5VKI9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011264mg PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 9.5e-83
Identity = 163/217 (75.12%), Postives = 183/217 (84.33%), Query Frame = 1


Query: 89  EDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAYASRLGFVI 148
           +D D +E+ +GK           T+   SD EPYVGMEFESEE+AKVFYDAYA+ LGF++
Sbjct: 9   KDEDVIESSNGKDAV--------TSEGNSDMEPYVGMEFESEEAAKVFYDAYATHLGFIM 68

Query: 149 RVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVVVKKEKSGK 208
           RVDAFRRSMRDG VVWRRLVCNKEGFRK RPKRSENRKPRAITREGCKAM+VVKKEKSGK
Sbjct: 69  RVDAFRRSMRDGKVVWRRLVCNKEGFRKTRPKRSENRKPRAITREGCKAMIVVKKEKSGK 128

Query: 209 WIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRCAAYQEQLA 268
           WIVT+FVK+HNHPL+VTPA+ RR VLLSQT DEKD KIRELTA+LQ ERKR AAYQEQL 
Sbjct: 129 WIVTRFVKEHNHPLVVTPANGRRTVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLD 188

Query: 269 MILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSNS 306
           M+LR+ME+HSNHL+ NID IVQSVK+IESK    SNS
Sbjct: 189 MVLREMEEHSNHLSRNIDGIVQSVKEIESKRVAPSNS 217

[Close]

BLAST of CmoCh17G012860 vs. TrEMBL
Match: A0A067L9X3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15096 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.4e-81
Identity = 159/221 (71.95%), Postives = 185/221 (83.71%), Query Frame = 1


Query: 81  VDGIPTAIEDGDA---VENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFY 140
           +D  P+  EDGD    VE+ + K +         T    SD EPYVGMEFESEESAKVFY
Sbjct: 1   MDEQPSVSEDGDMNQIVESSNSKEVT--------TTEGSSDMEPYVGMEFESEESAKVFY 60

Query: 141 DAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKA 200
           DAYA+RLGF++RVDAFRRSMRDG VVWRRLVCNKEGFRK RP+RSENRKPRA+TREGCKA
Sbjct: 61  DAYATRLGFMMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSENRKPRAVTREGCKA 120

Query: 201 MVVVKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLER 260
           M+VVKKEK+GKWIVT+FVK+HNHPL+ TP++ RR VLLSQT DEKD KIRELTA+LQ ER
Sbjct: 121 MIVVKKEKTGKWIVTRFVKEHNHPLVATPSNGRRTVLLSQTPDEKDVKIRELTAELQRER 180

Query: 261 KRCAAYQEQLAMILRDMEDHSNHLAINIDDIVQSVKDIESK 299
           KR AAYQ+QL M+LR+ME+HSNHL+ NI+DIVQSV++IESK
Sbjct: 181 KRSAAYQQQLDMVLREMEEHSNHLSRNIEDIVQSVREIESK 213

[Close]

BLAST of CmoCh17G012860 vs. TrEMBL
Match: F6I1W9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0174g00120 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.5e-80
Identity = 156/217 (71.89%), Postives = 183/217 (84.33%), Query Frame = 1


Query: 89  EDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAYASRLGFVI 148
           EDG+ +E+ +GK L  +  E        S+ EP+VGMEFESEE+AKVFYD YA+ LGF++
Sbjct: 40  EDGEMIESSNGKEL--VAHEGN------SEMEPHVGMEFESEEAAKVFYDTYATHLGFIM 99

Query: 149 RVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVVVKKEKSGK 208
           RVDAFRRSMRDG VVWRRLVCNKEGFRK RP+RSENRKPRAITREGCKAM+VVKKEK+GK
Sbjct: 100 RVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSENRKPRAITREGCKAMIVVKKEKTGK 159

Query: 209 WIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRCAAYQEQLA 268
           W+VT+FVK+HNH L+ TPA++RR VLLSQT DEKD KIRELTA+LQ ERKRCAA+QEQL 
Sbjct: 160 WVVTRFVKEHNHQLVATPANSRRTVLLSQTPDEKDIKIRELTAELQRERKRCAAFQEQLD 219

Query: 269 MILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSNS 306
           M+LRDME+HSNHL+ NID IVQSV++IESK    S S
Sbjct: 220 MVLRDMEEHSNHLSRNIDGIVQSVREIESKKIVHSQS 248

[Close]

BLAST of CmoCh17G012860 vs. TrEMBL
Match: B9SMQ2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1627500 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.4e-80
Identity = 153/210 (72.86%), Postives = 181/210 (86.19%), Query Frame = 1


Query: 89  EDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAYASRLGFVI 148
           EDG+ ++        + V+ AE +    SD EPYVGMEFESEE+AKVFYDAYA+RLGF++
Sbjct: 3   EDGEDMDQTVDSSNGKEVTTAEES----SDMEPYVGMEFESEEAAKVFYDAYATRLGFIM 62

Query: 149 RVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVVVKKEKSGK 208
           RVDAFRRSMRDG VVWRRLVCNKEGFRK RP+RSENRKPRAITREGCKAM+VVKKEK+GK
Sbjct: 63  RVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSENRKPRAITREGCKAMIVVKKEKTGK 122

Query: 209 WIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRCAAYQEQLA 268
           W+VT+FVK+HNHPL+  P++ RR+VLLSQT DEKD KIRELTA+LQ ERKR AAYQEQL 
Sbjct: 123 WVVTRFVKEHNHPLVAIPSNGRRSVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLY 182

Query: 269 MILRDMEDHSNHLAINIDDIVQSVKDIESK 299
            +LRDME+HSNHL+ NI+D+VQSV++IESK
Sbjct: 183 TVLRDMEEHSNHLSRNIEDVVQSVREIESK 208

[Close]

BLAST of CmoCh17G012860 vs. TAIR10
Match: AT3G07500.1 (AT3G07500.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 268.1 bits (684), Expect = 6.7e-72
Identity = 130/184 (70.65%), Postives = 160/184 (86.96%), Query Frame = 1


Query: 120 EPYVGMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRP 179
           EP++GMEFESEE+AK FYD YA+ +GFV+RVDAFRRSMRDG+VVWRRLVCNKEGFR+ RP
Sbjct: 32  EPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRP 91

Query: 180 KRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSQTR 239
           +RSE+RKPRAITREGCKA++VVK+EKSG W+VTKF K+HNHPL+    + RRN  L QT 
Sbjct: 92  RRSESRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLSPNVRRNFQLPQTP 151

Query: 240 DEKDAKIRELTAKLQLERKRCAAYQEQLAMILRDMEDHSNHLAINIDDIVQSVKDIESKS 299
           DEKDAKIREL+A+L  ER+RC A Q+QL M+L++ME+HSNHL INI+ ++QSV+DIE  S
Sbjct: 152 DEKDAKIRELSAELSRERRRCTALQQQLDMVLKEMEEHSNHLTININSVIQSVRDIE--S 211

Query: 300 NTFS 304
           NTF+
Sbjct: 212 NTFT 213

[Close]

BLAST of CmoCh17G012860 vs. TAIR10
Match: AT2G43280.1 (AT2G43280.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-44
Identity = 95/195 (48.72%), Postives = 135/195 (69.23%), Query Frame = 1


Query: 108 EAEATATNISDT-----EPYVGMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSV 167
           E + T  N ++T     EP  G+ FESE++AK+FYD Y+ RLGFV+RV + RRS +DG +
Sbjct: 4   EDDPTTKNSNNTDDFAIEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRI 63

Query: 168 VWRRLVCNKEGFR-KFRPKRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHP 227
           + RR  CNKEG     R K    RKPR  TREGCKAM+ VK ++SGKW++TKFVK+HNHP
Sbjct: 64  LARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHP 123

Query: 228 LIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRCAAYQEQLAMILRDMEDHSNHL 287
           L+V+P  AR       T DEKD +I+ELT +L+ +++ CAAY+EQL    + +E+HSN +
Sbjct: 124 LVVSPREAR------HTLDEKDKRIQELTIELRNKKRLCAAYKEQLDAFAKIVEEHSNQI 183

Query: 288 AINIDDIVQSVKDIE 297
           A  ++++V ++K+ E
Sbjct: 184 AKKVENVVNNLKEFE 192

[Close]

BLAST of CmoCh17G012860 vs. TAIR10
Match: AT3G59470.1 (AT3G59470.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-41
Identity = 91/192 (47.40%), Postives = 125/192 (65.10%), Query Frame = 1


Query: 109 AEATATNISDTEPYVGMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLV 168
           A A  T     EPYVG EFESE +A  FY+AYA+++GFVIRV    RS  DGS + R+LV
Sbjct: 58  AVADMTEAQGDEPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLV 117

Query: 169 CNKEGFRKFRPKRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPLIVTPAS 228
           CNKEG+R    KR +  + RA TR GCKAM++++KE SGKW++TKFVK+HNH L+  P  
Sbjct: 118 CNKEGYR-LPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM--PGR 177

Query: 229 ARRNVLLSQTRDEKDAKIRELTAKLQLERKRCAAYQEQLAMILRDMEDHSNHLAINIDDI 288
            RR  +  Q  +E D KI+EL  +L  E+KR A Y+  L M+   +E H+  L+  I  I
Sbjct: 178 VRRGCIYDQYPNEHD-KIQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHI 237

Query: 289 VQSVKDIESKSN 301
           V +V+++E + +
Sbjct: 238 VDNVRNLEQRDH 245

[Close]

BLAST of CmoCh17G012860 vs. TAIR10
Match: AT4G12850.1 (AT4G12850.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 145.2 bits (365), Expect = 6.6e-35
Identity = 76/182 (41.76%), Postives = 118/182 (64.84%), Query Frame = 1


Query: 120 EPYVGMEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRP 179
           EPYVG++FESEE AK FY  Y+ RLGFV+R+   RRS  DG  + RRL CNK+G   F P
Sbjct: 9   EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQG---FGP 68

Query: 180 KRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSQTR 239
               +    + +REGCKA ++VK EKSGKW+VT+F+K+HNH L    +S+  +       
Sbjct: 69  NNQRSSSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFA----- 128

Query: 240 DEKDAKIRELTAKLQLERKRCAAYQEQLAMILRDMEDHSNHLAINIDDIVQSVKDIESKS 299
            +K+ KI+ELT +++ + + C  Y+++L   + ++E ++  L++ + DIV++VK +E + 
Sbjct: 129 -DKERKIKELTEEIECQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLECQI 181

Query: 300 NT 302
            T
Sbjct: 189 QT 181

[Close]

BLAST of CmoCh17G012860 vs. TAIR10
Match: AT4G38180.1 (AT4G38180.1 FAR1-related sequence 5)

HSP 1 Score: 135.6 bits (340), Expect = 5.2e-32
Identity = 71/147 (48.30%), Postives = 97/147 (65.99%), Query Frame = 1


Query: 87  AIEDGDAVENP---SGKPLA----RIVSEAEATATNISDTEPYVGMEFESEESAKVFYDA 146
           A++D D +++P    G  L           E  A ++ D EPY G+EFESEE+AK FY++
Sbjct: 32  ALDDDDMLDSPIMPCGNGLVGNSGNYFPNQEEEACDLLDLEPYDGLEFESEEAAKAFYNS 91

Query: 147 YASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENR---KPRAITREGCK 206
           YA R+GF  RV + RRS RDG+++ R+ VC KEGFR    KR+++R   +PR ITR GCK
Sbjct: 92  YARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCK 151

Query: 207 AMVVVKKEKSGKWIVTKFVKDHNHPLI 224
           A + VK + SGKW+V+ FVKDHNH L+
Sbjct: 152 ASLSVKMQDSGKWLVSGFVKDHNHELV 178

[Close]

BLAST of CmoCh17G012860 vs. NCBI nr
Match: gi|659092823|ref|XP_008447236.1| (PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 [Cucumis melo])

HSP 1 Score: 380.6 bits (976), Expect = 2.6e-102
Identity = 190/225 (84.44%), Postives = 211/225 (93.78%), Query Frame = 1


Query: 81  VDGIPTAIEDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAY 140
           +DGIPT +   D VE+PSGK  AR+V+EAEA  +N+SDTEP+VGMEFESEES KVFYDAY
Sbjct: 1   MDGIPTVV---DVVEDPSGKDFARVVTEAEAITSNLSDTEPFVGMEFESEESVKVFYDAY 60

Query: 141 ASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVV 200
           ASRLGF++RVDAFRRSMRDG+VVWRRLVCNKEGFRKF+PKRSENRKPRA+TREGCKAMVV
Sbjct: 61  ASRLGFIMRVDAFRRSMRDGAVVWRRLVCNKEGFRKFKPKRSENRKPRAVTREGCKAMVV 120

Query: 201 VKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRC 260
           VKKEK+GKW+VTKFVKDHNHPLIVTPASARRNVLLS TRDEKDAKIRELTA+LQ ERKRC
Sbjct: 121 VKKEKTGKWVVTKFVKDHNHPLIVTPASARRNVLLSHTRDEKDAKIRELTAELQQERKRC 180

Query: 261 AAYQEQLAMILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSNS 306
           AAYQEQLAMILRDME+HSNHLA NID+I+QSV+DIESK+N FSNS
Sbjct: 181 AAYQEQLAMILRDMEEHSNHLARNIDNIIQSVRDIESKNNAFSNS 222

[Close]

BLAST of CmoCh17G012860 vs. NCBI nr
Match: gi|449465248|ref|XP_004150340.1| (PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 7.9e-99
Identity = 186/225 (82.67%), Postives = 208/225 (92.44%), Query Frame = 1


Query: 81  VDGIPTAIEDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAY 140
           +DGIP+ +   + VE+PSGK  AR V+EAEA  +N SDTEP+VGMEFESEES KVFYDAY
Sbjct: 1   MDGIPSVL---NVVEDPSGKDFARAVTEAEAITSNNSDTEPFVGMEFESEESVKVFYDAY 60

Query: 141 ASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVV 200
           ASRLGF++RVDAFRRSMRDG+VVWRRLVCNKEGFRKF+PKRSENRKPRA+TREGCKAMVV
Sbjct: 61  ASRLGFIMRVDAFRRSMRDGAVVWRRLVCNKEGFRKFKPKRSENRKPRAVTREGCKAMVV 120

Query: 201 VKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRC 260
           VKKEK+GKW+VTKFVKDHNHPLIVTPASARRNVLLS TRDEKDAKIRELTA+LQ ERKRC
Sbjct: 121 VKKEKTGKWVVTKFVKDHNHPLIVTPASARRNVLLSHTRDEKDAKIRELTAELQQERKRC 180

Query: 261 AAYQEQLAMILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSNS 306
           AAYQEQLAMIL DME+HSNHLA NID+I+QSV+DIES++N FSNS
Sbjct: 181 AAYQEQLAMILGDMEEHSNHLARNIDNIIQSVRDIESENNAFSNS 222

[Close]

BLAST of CmoCh17G012860 vs. NCBI nr
Match: gi|659092825|ref|XP_008447237.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 1.2e-86
Identity = 163/181 (90.06%), Postives = 176/181 (97.24%), Query Frame = 1


Query: 125 MEFESEESAKVFYDAYASRLGFVIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSEN 184
           MEFESEES KVFYDAYASRLGF++RVDAFRRSMRDG+VVWRRLVCNKEGFRKF+PKRSEN
Sbjct: 1   MEFESEESVKVFYDAYASRLGFIMRVDAFRRSMRDGAVVWRRLVCNKEGFRKFKPKRSEN 60

Query: 185 RKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDA 244
           RKPRA+TREGCKAMVVVKKEK+GKW+VTKFVKDHNHPLIVTPASARRNVLLS TRDEKDA
Sbjct: 61  RKPRAVTREGCKAMVVVKKEKTGKWVVTKFVKDHNHPLIVTPASARRNVLLSHTRDEKDA 120

Query: 245 KIRELTAKLQLERKRCAAYQEQLAMILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSN 304
           KIRELTA+LQ ERKRCAAYQEQLAMILRDME+HSNHLA NID+I+QSV+DIESK+N FSN
Sbjct: 121 KIRELTAELQQERKRCAAYQEQLAMILRDMEEHSNHLARNIDNIIQSVRDIESKNNAFSN 180

Query: 305 S 306
           S
Sbjct: 181 S 181

[Close]

BLAST of CmoCh17G012860 vs. NCBI nr
Match: gi|1009151695|ref|XP_015893687.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Ziziphus jujuba])

HSP 1 Score: 322.4 bits (825), Expect = 8.5e-85
Identity = 162/217 (74.65%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 89  EDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAYASRLGFVI 148
           +DGDA+++ SGK +A        TA   S+ EPYVGMEFESEE+AKVFYDAYA+ LGF++
Sbjct: 9   DDGDAIDDSSGKEIA--------TAEGSSEMEPYVGMEFESEEAAKVFYDAYATSLGFIM 68

Query: 149 RVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVVVKKEKSGK 208
           RVDAFRRSMRDG VVWRRLVCNKEGFRK RPKRSENRKPRAITREGCKAM+VVKKEK+GK
Sbjct: 69  RVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPKRSENRKPRAITREGCKAMIVVKKEKTGK 128

Query: 209 WIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRCAAYQEQLA 268
           W+VT+FVK+HNHPL+VTPA+ RR++LLSQT DEKD KIRELTA+LQ ERKR AAYQEQL 
Sbjct: 129 WVVTRFVKEHNHPLVVTPANGRRSMLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLD 188

Query: 269 MILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSNS 306
           ++LR+ME+HS+HL+ NIDDI+QSVKDIESK    SNS
Sbjct: 189 IVLREMEEHSSHLSRNIDDIIQSVKDIESKRLAVSNS 217

[Close]

BLAST of CmoCh17G012860 vs. NCBI nr
Match: gi|595793413|ref|XP_007200455.1| (hypothetical protein PRUPE_ppa011264mg [Prunus persica])

HSP 1 Score: 315.1 bits (806), Expect = 1.4e-82
Identity = 163/217 (75.12%), Postives = 183/217 (84.33%), Query Frame = 1


Query: 89  EDGDAVENPSGKPLARIVSEAEATATNISDTEPYVGMEFESEESAKVFYDAYASRLGFVI 148
           +D D +E+ +GK           T+   SD EPYVGMEFESEE+AKVFYDAYA+ LGF++
Sbjct: 9   KDEDVIESSNGKDAV--------TSEGNSDMEPYVGMEFESEEAAKVFYDAYATHLGFIM 68

Query: 149 RVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVVVKKEKSGK 208
           RVDAFRRSMRDG VVWRRLVCNKEGFRK RPKRSENRKPRAITREGCKAM+VVKKEKSGK
Sbjct: 69  RVDAFRRSMRDGKVVWRRLVCNKEGFRKTRPKRSENRKPRAITREGCKAMIVVKKEKSGK 128

Query: 209 WIVTKFVKDHNHPLIVTPASARRNVLLSQTRDEKDAKIRELTAKLQLERKRCAAYQEQLA 268
           WIVT+FVK+HNHPL+VTPA+ RR VLLSQT DEKD KIRELTA+LQ ERKR AAYQEQL 
Sbjct: 129 WIVTRFVKEHNHPLVVTPANGRRTVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLD 188

Query: 269 MILRDMEDHSNHLAINIDDIVQSVKDIESKSNTFSNS 306
           M+LR+ME+HSNHL+ NID IVQSVK+IESK    SNS
Sbjct: 189 MVLREMEEHSNHLSRNIDGIVQSVKEIESKRVAPSNS 217

The following BLAST results are available for this feature:

BLAST of CmoCh17G012860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FRS5_ARATH	9.3e-31	48.30	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1	[more]
FRS12_ARATH	9.0e-18	42.45	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1	[more]
FRS7_ARATH	7.6e-17	40.57	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1	[more]
FRS2_ARATH	1.3e-13	37.37	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=1 SV=1	[more]
FAR1_ARATH	1.3e-13	27.78	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1	[more]

BLAST of CmoCh17G012860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA59_CUCSA	5.5e-99	82.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372900 PE=4 SV=1	[more]
M5VKI9_PRUPE	9.5e-83	75.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011264mg PE=4 SV=1	[more]
A0A067L9X3_JATCU	1.4e-81	71.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15096 PE=4 SV=1	[more]
F6I1W9_VITVI	1.5e-80	71.89	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0174g00120 PE=4 SV=...	[more]
B9SMQ2_RICCO	3.4e-80	72.86	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1627500 PE=4 SV=1	[more]

BLAST of CmoCh17G012860 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07500.1	6.7e-72	70.65	Far-red impaired responsive (FAR1) family protein	[more]
AT2G43280.1	2.0e-44	48.72	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.1	1.2e-41	47.40	Far-red impaired responsive (FAR1) family protein	[more]
AT4G12850.1	6.6e-35	41.76	Far-red impaired responsive (FAR1) family protein	[more]
AT4G38180.1	5.2e-32	48.30	FAR1-related sequence 5	[more]

BLAST of CmoCh17G012860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092823\|ref\|XP_008447236.1\|	2.6e-102	84.44	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 [Cucumis melo]	[more]
gi\|449465248\|ref\|XP_004150340.1\|	7.9e-99	82.67	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 [Cucumis sativus]	[more]
gi\|659092825\|ref\|XP_008447237.1\|	1.2e-86	90.06	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 [Cucumis melo]	[more]
gi\|1009151695\|ref\|XP_015893687.1\|	8.5e-85	74.65	PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Ziziphus jujuba]	[more]
gi\|595793413\|ref\|XP_007200455.1\|	1.4e-82	75.12	hypothetical protein PRUPE_ppa011264mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004330	FAR1_DNA_bnd_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0080175	phragmoplast microtubule organization
biological_process	GO:0051225	spindle assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0070652	HAUS complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0005819	spindle
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012860.1	CmoCh17G012860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 136..223 score: 5.5
None	No IPR available	unknown	Coil	Coil	coord: 239..266 scor
None	No IPR available	PANTHER	PTHR31669:SF46	FAR-RED IMPAIRED RESPONSIVE 1-LIKE PROTEIN	coord: 46..298 score: 5.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012860	Cucsa.388100	Cucumber (Gy14) v1	cgycmoB1076
CmoCh17G012860	CmaCh17G013160	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012860	Csa7G372900	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012860	ClCG09G008120	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012860	CSPI07G15160	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012860	Lsi02G021700	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012860	Cp4.1LG12g10580	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012860	MELO3C015688.2	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G012860	MELO3C028820.2	Melon (DHL92) v3.6.1	cmomedB363
CmoCh17G012860	CsaV3_7G026930	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012860	Cla97C09G170780	Watermelon (97103) v2	cmowmbB373
CmoCh17G012860	Bhi09G001011	Wax gourd	cmowgoB0492
CmoCh17G012860	CsGy7G013650	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G012860	Carg11497	Silver-seed gourd	carcmoB0021

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012860	Melon (DHL92) v3.6.1	cmomedB368
CmoCh17G012860	Silver-seed gourd	carcmoB0112
CmoCh17G012860	Cucurbita moschata (Rifu)	cmocmoB311
CmoCh17G012860	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G012860	Melon (DHL92) v3.5.1	cmomeB321
CmoCh17G012860	Watermelon (97103) v1	cmowmB325