CmoCh17G012850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein
Location	Cmo_Chr17 : 10090217 .. 10090768 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTACCCATTCAACAATCTCTCTGTTCTCCTCTGTTTCCTCTGTTTTCCTCTGTTTTCCTCTGTTTTAAGTGCTTAAGTTTGTTTGTACTACAGGACTACTACTGCCGGAGGAACTACATTCCGAGCTTCGGAAACTGGGAATGGAATGACCATCTCCGCTTCTCCCACTGCTTCGAATCATCCAGAATCGCCGGATATCCCCACGACACCGATTTGTACGTCACCGGCGATTTGTACGAAAACGACGTTGTCACCCCTGCAATGATCGTCGTCCCTCGCCACAGGGTACTTAAAAACAACCCCATTTCTTTAACCCATTTCCCTTGCTTCTTCAATCCTTCCAATTAATCGGGAATGAATTTGCAGAGGAAACGAGAGAAACAGGGGAAGCAAGGAAAGAAGGCAAACTATATGAACATGAAGGAAACAGAGAGCCCTCCTCATGAACTGCTGCAATTCCCAAGGCCTAAGCCCAAGCCAGTCGACGAAGACTTATACAAAATCCCTCCCGAGCTCCTCGCCAAATCCAGAAAGGTCTTTTTCTGA

mRNA sequence

ATGGAGGACTACTACTGCCGGAGGAACTACATTCCGAGCTTCGGAAACTGGGAATGGAATGACCATCTCCGCTTCTCCCACTGCTTCGAATCATCCAGAATCGCCGGATATCCCCACGACACCGATTTGTACGTCACCGGCGATTTGTACGAAAACGACGTTGTCACCCCTGCAATGATCGTCGTCCCTCGCCACAGGAGGAAACGAGAGAAACAGGGGAAGCAAGGAAAGAAGGCAAACTATATGAACATGAAGGAAACAGAGAGCCCTCCTCATGAACTGCTGCAATTCCCAAGGCCTAAGCCCAAGCCAGTCGACGAAGACTTATACAAAATCCCTCCCGAGCTCCTCGCCAAATCCAGAAAGGTCTTTTTCTGA

Coding sequence (CDS)

ATGGAGGACTACTACTGCCGGAGGAACTACATTCCGAGCTTCGGAAACTGGGAATGGAATGACCATCTCCGCTTCTCCCACTGCTTCGAATCATCCAGAATCGCCGGATATCCCCACGACACCGATTTGTACGTCACCGGCGATTTGTACGAAAACGACGTTGTCACCCCTGCAATGATCGTCGTCCCTCGCCACAGGAGGAAACGAGAGAAACAGGGGAAGCAAGGAAAGAAGGCAAACTATATGAACATGAAGGAAACAGAGAGCCCTCCTCATGAACTGCTGCAATTCCCAAGGCCTAAGCCCAAGCCAGTCGACGAAGACTTATACAAAATCCCTCCCGAGCTCCTCGCCAAATCCAGAAAGGTCTTTTTCTGA

Homology

[Close]

BLAST of CmoCh17G012850 vs. TrEMBL
Match: A0A0A0KA54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372860 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-42
Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGYPHDTDLYVTGDLYENDVVTPAMI 60
           MEDYY RRNYIPSFGNWEWNDHL FSHCFESSRIAG+PHDTDLYV GDLYENDVVTPAMI
Sbjct: 1   MEDYYYRRNYIPSFGNWEWNDHLPFSHCFESSRIAGFPHDTDLYVAGDLYENDVVTPAMI 60

Query: 61  VVPRHRRKREKQGKQGKKANYMNMKETESPPHELLQFPRPKPKPVDEDLYKIPPELL-AK 120
           VVPR RRKR++QGKQ KK  + +     S  +      +P PKPVDEDLYKI P+LL AK
Sbjct: 61  VVPRPRRKRDRQGKQSKKEKWGSPSNGMSHNYST----KPMPKPVDEDLYKISPDLLAAK 119

Query: 121 SRK 123
           S+K
Sbjct: 121 SKK 119

[Close]

BLAST of CmoCh17G012850 vs. TrEMBL
Match: A0A0L9VTQ7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g148000 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 81/133 (60.90%), Postives = 100/133 (75.19%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGY-------PHDTDLYVTGDLYEND 60
           ME+YY +R+++P+FG+W+WND+L F+ CFES+R AG          D DLYVTGDLYEND
Sbjct: 1   MEEYYYKRHHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYEND 60

Query: 61  VVTPAMIVVPRHRRK-REKQGKQGKKANYM-NMKETESPPHELLQFPRPKPKPVDEDLYK 120
           VVTPAMIVVPR R K R +  K+ KK N++ N+KE  SP + +   PRPKPKPVDEDLYK
Sbjct: 61  VVTPAMIVVPRRREKVRYQHEKEAKKQNWVSNVKELSSPTNPI---PRPKPKPVDEDLYK 120

Query: 121 IPPELL-AKSRKV 124
           I PELL AK+RKV
Sbjct: 121 ISPELLYAKTRKV 130

[Close]

BLAST of CmoCh17G012850 vs. TrEMBL
Match: A0A0S3SVY5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G032200 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGY-------PHDTDLYVTGDLYEND 60
           ME+YY +R+++P+FG+W+WND+L F+ CFES+R AG          D DLYVTGDLYEND
Sbjct: 1   MEEYYYKRHHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYEND 60

Query: 61  VVTPAMIVVPRHRRK-REKQGKQGKKANYM-NMKETESPPHELLQFPRPKPKPVDEDLYK 120
           VVTPAMIVVPR R K R +  K+ KK N++ N+KE  SP + +   PRPKPKPVDEDLYK
Sbjct: 61  VVTPAMIVVPRRREKVRYQHEKEAKKQNWVSNVKELSSPTNPI---PRPKPKPVDEDLYK 120

Query: 121 IPPELL-AKSRK 123
           I PELL AK+RK
Sbjct: 121 ISPELLYAKTRK 129

[Close]

BLAST of CmoCh17G012850 vs. TrEMBL
Match: V7ALX6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G031300g PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGY-------PHDTDLYVTGDLYEND 60
           ME+YY +R+++P+FG+W+WND+L F+ CFES+R AG          D DLYVTGDLYEND
Sbjct: 1   MEEYYYKRHHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYEND 60

Query: 61  VVTPAMIVVPRHRRK-REKQGKQGKKANYM-NMKETESPPHELLQFPRPKPKPVDEDLYK 120
           VVTPAMIVVPR R K R +  K+ KK N++ N+KE  SP   +    RPKPKPVDEDLYK
Sbjct: 61  VVTPAMIVVPRRREKGRCQHEKEAKKQNWVSNVKELPSPTSPIA---RPKPKPVDEDLYK 120

Query: 121 IPPELL-AKSRK 123
           I PELL AK+RK
Sbjct: 121 ISPELLYAKTRK 129

[Close]

BLAST of CmoCh17G012850 vs. TrEMBL
Match: A0A067LA51_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15117 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.9e-31
Identity = 73/131 (55.73%), Postives = 91/131 (69.47%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAG-----YPHDTDLYVTGDLYENDVV 60
           M+DYY  RN++P+FG+W+WN+ L F+ CFES+R AG     +  D DLYV GDLYENDVV
Sbjct: 1   MQDYYYSRNHVPAFGSWDWNNDLPFTQCFESARQAGLLRYSFSEDRDLYVAGDLYENDVV 60

Query: 61  TPAMIVVPRHRRK----REKQGKQGKKANYMNMKETESPPHELLQFPRPKPKPVDEDLYK 120
           TPAMIVVPR R K    REK+ K+ +     ++KE  SP +  +   RP PKPVDEDLYK
Sbjct: 61  TPAMIVVPRRRGKVRQSREKEEKRQENWAVGDVKEAPSPNNNFMAMSRPTPKPVDEDLYK 120

Query: 121 IPPELLAKSRK 123
           IPPELL +  K
Sbjct: 121 IPPELLYQKPK 131

[Close]

BLAST of CmoCh17G012850 vs. TAIR10
Match: AT5G48500.1 (AT5G48500.1 unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-22
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 1


Query: 5   YCRRNYIPSFGNWEWNDHLRFSHCFESS--------RIAGYPHDTDLYVTGDLYEN-DVV 64
           YCRR ++P+FG+W+WND + F+ CFE++          A YP D DLY+ GDLY+N  +V
Sbjct: 10  YCRRGHVPAFGSWDWNDAVPFTQCFETATTQQPAFLHYASYPQDRDLYLAGDLYDNHHLV 69

Query: 65  TPAMIVVPRHRRK------REKQGKQGKKANY-MNMKETESP---PHELLQFPRPKPKPV 123
            PA+I+VPR R K       +K+    ++ NY    +E  +P   P  +++     PKPV
Sbjct: 70  APAVIIVPRRRAKVGQEPAEKKRNVSKQQHNYKTEAREFNAPVSCPTPVVKRRMKAPKPV 129

[Close]

BLAST of CmoCh17G012850 vs. NCBI nr
Match: gi|778727195|ref|XP_004150335.2| (PREDICTED: uncharacterized protein LOC101219200 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.8e-42
Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGYPHDTDLYVTGDLYENDVVTPAMI 60
           MEDYY RRNYIPSFGNWEWNDHL FSHCFESSRIAG+PHDTDLYV GDLYENDVVTPAMI
Sbjct: 1   MEDYYYRRNYIPSFGNWEWNDHLPFSHCFESSRIAGFPHDTDLYVAGDLYENDVVTPAMI 60

Query: 61  VVPRHRRKREKQGKQGKKANYMNMKETESPPHELLQFPRPKPKPVDEDLYKIPPELL-AK 120
           VVPR RRKR++QGKQ KK  + +     S  +      +P PKPVDEDLYKI P+LL AK
Sbjct: 61  VVPRPRRKRDRQGKQSKKEKWGSPSNGMSHNYST----KPMPKPVDEDLYKISPDLLAAK 119

Query: 121 SRK 123
           S+K
Sbjct: 121 SKK 119

[Close]

BLAST of CmoCh17G012850 vs. NCBI nr
Match: gi|920719249|gb|KOM58446.1| (hypothetical protein LR48_Vigan11g148000 [Vigna angularis])

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-33
Identity = 81/133 (60.90%), Postives = 100/133 (75.19%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGY-------PHDTDLYVTGDLYEND 60
           ME+YY +R+++P+FG+W+WND+L F+ CFES+R AG          D DLYVTGDLYEND
Sbjct: 1   MEEYYYKRHHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYEND 60

Query: 61  VVTPAMIVVPRHRRK-REKQGKQGKKANYM-NMKETESPPHELLQFPRPKPKPVDEDLYK 120
           VVTPAMIVVPR R K R +  K+ KK N++ N+KE  SP + +   PRPKPKPVDEDLYK
Sbjct: 61  VVTPAMIVVPRRREKVRYQHEKEAKKQNWVSNVKELSSPTNPI---PRPKPKPVDEDLYK 120

Query: 121 IPPELL-AKSRKV 124
           I PELL AK+RKV
Sbjct: 121 ISPELLYAKTRKV 130

[Close]

BLAST of CmoCh17G012850 vs. NCBI nr
Match: gi|965610846|dbj|BAT96985.1| (hypothetical protein VIGAN_09032200 [Vigna angularis var. angularis])

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGY-------PHDTDLYVTGDLYEND 60
           ME+YY +R+++P+FG+W+WND+L F+ CFES+R AG          D DLYVTGDLYEND
Sbjct: 1   MEEYYYKRHHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYEND 60

Query: 61  VVTPAMIVVPRHRRK-REKQGKQGKKANYM-NMKETESPPHELLQFPRPKPKPVDEDLYK 120
           VVTPAMIVVPR R K R +  K+ KK N++ N+KE  SP + +   PRPKPKPVDEDLYK
Sbjct: 61  VVTPAMIVVPRRREKVRYQHEKEAKKQNWVSNVKELSSPTNPI---PRPKPKPVDEDLYK 120

Query: 121 IPPELL-AKSRK 123
           I PELL AK+RK
Sbjct: 121 ISPELLYAKTRK 129

[Close]

BLAST of CmoCh17G012850 vs. NCBI nr
Match: gi|951033668|ref|XP_014515784.1| (PREDICTED: uncharacterized protein LOC106773592 [Vigna radiata var. radiata])

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-31
Identity = 79/132 (59.85%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGY-------PHDTDLYVTGDLYEND 60
           ME+YY +R+++P+FG+W+WND+L F+ CFES+R AG          D DLYVTGDLYEND
Sbjct: 1   MEEYYYKRHHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYEND 60

Query: 61  VVTPAMIVVPRHRRK-REKQGKQGKKANYM-NMKETESPPHELLQFPRPKPKPVDEDLYK 120
           VVTPAMIVVPR R K R +  K+ KK N++ N+KE  SP + +    RPKPKPVDEDLYK
Sbjct: 61  VVTPAMIVVPRRREKVRCQHEKEAKKQNWVSNVKELSSPTNPI---SRPKPKPVDEDLYK 120

Query: 121 IPPELL-AKSRK 123
           I PELL AK+RK
Sbjct: 121 ISPELLYAKTRK 129

[Close]

BLAST of CmoCh17G012850 vs. NCBI nr
Match: gi|593264146|ref|XP_007134251.1| (hypothetical protein PHAVU_010G031300g [Phaseolus vulgaris])

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-31
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGY-------PHDTDLYVTGDLYEND 60
           ME+YY +R+++P+FG+W+WND+L F+ CFES+R AG          D DLYVTGDLYEND
Sbjct: 1   MEEYYYKRHHVPAFGSWDWNDNLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYEND 60

Query: 61  VVTPAMIVVPRHRRK-REKQGKQGKKANYM-NMKETESPPHELLQFPRPKPKPVDEDLYK 120
           VVTPAMIVVPR R K R +  K+ KK N++ N+KE  SP   +    RPKPKPVDEDLYK
Sbjct: 61  VVTPAMIVVPRRREKGRCQHEKEAKKQNWVSNVKELPSPTSPIA---RPKPKPVDEDLYK 120

Query: 121 IPPELL-AKSRK 123
           I PELL AK+RK
Sbjct: 121 ISPELLYAKTRK 129

The following BLAST results are available for this feature:

BLAST of CmoCh17G012850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G012850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA54_CUCSA	2.0e-42	73.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372860 PE=4 SV=1	[more]
A0A0L9VTQ7_PHAAN	2.8e-33	60.90	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g148000 PE=4 SV=1	[more]
A0A0S3SVY5_PHAAN	1.1e-32	60.61	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G032200 PE=...	[more]
V7ALX6_PHAVU	2.0e-31	59.85	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G031300g PE=4 SV=1	[more]
A0A067LA51_JATCU	5.9e-31	55.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15117 PE=4 SV=1	[more]

BLAST of CmoCh17G012850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48500.1	3.4e-22	40.88	unknown protein	[more]

BLAST of CmoCh17G012850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727195\|ref\|XP_004150335.2\|	2.8e-42	73.17	PREDICTED: uncharacterized protein LOC101219200 [Cucumis sativus]	[more]
gi\|920719249\|gb\|KOM58446.1\|	4.1e-33	60.90	hypothetical protein LR48_Vigan11g148000 [Vigna angularis]	[more]
gi\|965610846\|dbj\|BAT96985.1\|	1.5e-32	60.61	hypothetical protein VIGAN_09032200 [Vigna angularis var. angularis]	[more]
gi\|951033668\|ref\|XP_014515784.1\|	2.2e-31	59.85	PREDICTED: uncharacterized protein LOC106773592 [Vigna radiata var. radiata]	[more]
gi\|593264146\|ref\|XP_007134251.1\|	2.9e-31	59.85	hypothetical protein PHAVU_010G031300g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080167	response to karrikin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G012850.1	CmoCh17G012850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33699	FAMILY NOT NAMED	coord: 1..122 score: 3.0
None	No IPR available	PANTHER	PTHR33699:SF2	SUBFAMILY NOT NAMED	coord: 1..122 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G012850	Cucsa.388060	Cucumber (Gy14) v1	cgycmoB1076
CmoCh17G012850	CmaCh17G013150	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G012850	CmaCh08G002670	Cucurbita maxima (Rimu)	cmacmoB888
CmoCh17G012850	Cla014867	Watermelon (97103) v1	cmowmB325
CmoCh17G012850	Csa7G372860	Cucumber (Chinese Long) v2	cmocuB374
CmoCh17G012850	ClCG09G008150	Watermelon (Charleston Gray)	cmowcgB302
CmoCh17G012850	CSPI07G15120	Wild cucumber (PI 183967)	cmocpiB377
CmoCh17G012850	Lsi02G021680	Bottle gourd (USVL1VR-Ls)	cmolsiB334
CmoCh17G012850	Cp4.1LG12g10660	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G012850	CsaV3_7G026890	Cucumber (Chinese Long) v3	cmocucB0450
CmoCh17G012850	Cla97C09G170820	Watermelon (97103) v2	cmowmbB373
CmoCh17G012850	Bhi09G001015	Wax gourd	cmowgoB0492
CmoCh17G012850	CsGy7G013610	Cucumber (Gy14) v2	cgybcmoB903
CmoCh17G012850	Carg05090	Silver-seed gourd	carcmoB0112
CmoCh17G012850	Carg11495	Silver-seed gourd	carcmoB0021

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G012850	CmoCh08G002650	Cucurbita moschata (Rifu)	cmocmoB311

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G012850	Melon (DHL92) v3.5.1	cmomeB321
CmoCh17G012850	Melon (DHL92) v3.6.1	cmomedB360
CmoCh17G012850	Melon (DHL92) v3.6.1	cmomedB363
CmoCh17G012850	Melon (DHL92) v3.6.1	cmomedB368