CmoCh17G003800 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCATTGAAAGCCCTAAACCTCGCGGAGAGAAATCTTTGGATGGCTACGAGCAACAACCTCCATGGCTCTGGTACTCCTCTTCCTTCCATGTTTCCTTTTCGTGGTTTCATGAAGTGTTATGTGGTGTGGATTTTTCAGAATTGAGTAATCCTTTATGAACAAGGAGGCACGTTTATTGATTTTCTCTTTTTTACTTCCTTTTAATTTCCTGTTTGCTGTCATATTACCAGAAATGTATGATCGTGAACCGAATTCACATCAGCAGGTTATTTAAGATGGACGACTTTTCTTGTTCTTAGTTGCGCTATAATTGTCTCTTTGAGATGAACCTTCTATTGTTTGTTGAAGTCTAAGAAGCGTATTGAGGATTTCTAGTATTGAGATAAAGTTATGAATTCTCTGTGTGCTCATAAACGAGGGGAGAAAAGTAGTTTAATTCTGTATGTTCGTCTTTTGGTACTGGTAAAAATTTTCGGAATTTCATTGAGTGGTTAAGTCTGCATAAGTTGGAGGCATCAAAGATTTGCGATACTTGGAGGTGGGTGCTCGAAATAACTTACCTTAACCCTCTTTTTGAAAACTTTTTTTGTTTGCTATAATTGTATTCAGGCCTTCCGGATTATATAAACTATAATGTATAGTTTTGGTTTTTTTCTTCTTTCCCTAACTAGCTGCTTAAATTTCGTAAGTACATCCTGTTTACTGTCTTTGTTTTTTTTTACAATACCTTCTTATAAAGAGTTCCTTCAATTTTCAATGTTACATTAGTTAATTTCCAGACCTTTAGGGATTTTGTTTTGACCTTCTTAATTATGTTTTCAATCTGTTCTGAGATGTGGAATTTATATTTTGAAGATAATTTCTCTTATGAGTAAGATTATTTGAGTGAACGAAAGTCATTGTTCTCCTTGAAATACTGGAAAGAAGAGTCTTGCTGTTGATTAGCGCTTTATCGTCTTTTGTTGTCTTCTGGTTATCTTTATTTGCTGGACCGTGTTAAGTGTTTAATTTCCATTAATACTTTATACTCCTTATCTCACTCGTTATCAAAGCATTAGTTGATCCTCTTTTATCAATTATCGATTCATGTATAGTAACACTAAATGCGAGGTTTGCAGCTTTTCCTATTTTTCCTCAGAAGGTTGACTTTTTTCATATTATATGTCAGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGGTGAGCATAGGAAGCGGACTATAAGTCGTTTATTGTTTTAATTCTTTTCGTTGCTATACATTTCTTTATTTGCATGTTAATTTATTGATTAAGAGGTATAATGATATTCTTCTTTATTATGCTAGAAATAAAAGCGCGTGTCGATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATGTAAAAAATCACATTCTGCTCTTTCATGATGATGCAGCTCAAAATTTAGGAAAAATATCTCTTACTTTTTCTCTCTCCATCTTCCCCGTGTCTAGAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCTATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGGTGCCAATACTTTCATATATATTTTTATCTGTTTTTCTACCCTTTTAGGCGTGTGATTATCTAGGCATTTGGTTTTCTATTGTTACAAGACATATAGAGCTGAAGATGGATTTATCTATGTATGTCATTTGGTCAGTTGTTTGAATAATTGTTTAGATAATTTCTTCGTTGTTGGTAATGAAGGAGAACTTCCTTCTGTAATGATGCATGGGTAGGTAAGAAACACCCTTCTACTTCCATCTCTCTCTCTCTCTCTCTCTCGTCCTCCCTCTCCTTCTCCCTCTGTCCTTTTTTTGGTGATTTTTCTACCAAAAAATGTTTTGGTCTTTGATGCGTGGGAATAAGAAACTCATTCTTGGAGAATGGGTGTGAGAAGAAACTTACGGAAGGAGGAAAAGAGATTGCAGTTGTACTTGACTTGATTGATGAGATGAATCAAGGAAAGATAAAAAAGATTAAAAAGTGGATCTGTCTAGAACATTCTTGGTTAAATTTTTGGTGAAGCTACTTTACTGAAGGGTAGAAACTTGCTAGAAACTGAAAATCCTTAAGAAGTAATTGTTTTGTTGTGGATACTACAATTGGGTGGCATTAATACCACATATTAGTTGGTTAAAAGGTGTCCCCTGTTGCTTTTAGGAAAAAAAAAAGAAGAAAAAGGGTCCTGTTGCCTTAACCTTTCTACTGCATTTTTTGCATACAGGCAGGGAAGGATCAAACGTACTTGTCTGTCTTTCTACGCTCTTATGGCAGAAAACGTTGGGATAATTCTATGTATTTTGGTGTTTCATAGCGGTTGGAAAAGTTCCCTAACGAGGGTAACATATATGATATAACCTTAACCTCGTAGTATAAAGCTCAAAGCCAAAGCTAAATTGTTATGGAGTGCCATTAGATCAATCATTGGGAGGATTTGATTTGAAAGAAATCAAATTAGAGAAGTTTGTAGAATGGATGGAGAATGAATACTACAAAATATCAAGCCTCTTCTTGGTGTGGCCTGTCTATTGTACTTTGTAACCATACCTCCAATATAATTAAATTTTACTTCGGGGTTTTTCTTTATACAATGAGATTGGTCAGGCTTACATTTTCCTTAGTTCTGATAGTTGGGTGCTACTTTGTACTCTCCTAATAGGGAGTCTCAACTTCACAAGTATCACCAGAAAGTTGTTTACTGCTCAAAAAGTAAATATATTAATGACCCTGGTGTTAATTTTGAAAGCTTGGCTTGATTATATGACTACCTAGCCCGTCTATGGATAATCGTTACGTGTTTCTTCTGGAATTTAGGACTATAATTGTTGTGGTATCCCCTTTTCTTTGGTTAATTACTAGTTTTGGTGGGGAGGAGAATCAAAAGGTACGAGTCAAGATTTTACGACTTCATGGGTGAAGTTCGGTAAGTCGGGGCTTGGGTGGGATGTATGGGAGAGTCCTCCAAGAGGCTGATGGTCCTGATGTTTGATAACTGTACTTGCTTTATGATATCATCTCTTATAAAACCGTAAAACAGCTAGTTTTGCATTGTTTATGTTGATGATCTGTTAGTTGAAGAACTCAAACCATTGTCCTTTTACTTTAACAGATTACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGATTAATAAACCATCAAGAGAAGCAAGCTCTGTGGAGAATGTGCCGTAAGTATTAAGGTTGTTCTTGAATTTCTTGTGCGTATCACTTCCAATAGGCAGTACAGTCGGCTCGGATGATTTGGAAGTGAGTAATGGTTCATTGTGTGCCCATAGCGTATTCTGATATCTGCCTGACAAAAACTGCAAATCATGCTTCGATGTAAATCTTGGTCTCCTACCATCAGAAAGATTTCTTGTAGCACTTATCTTTCTTCTGTTGTTGTGTACACGGTTGTTACTCAACGGATTAAGGCATCTTTACCAATATGAGCATAGCTTAGCCGGTATAAAGTATGTGTTATCAACAAAAAGATCAGAGGTTTGAATTTTTATCTCTCATATTATTGAGCTAAAGAAATGATATTTATTTACCATGCAAGGTAGAGATGTTTATTGAAGCTGTAGAATAGGGCTCGTAGAAACGGAGAATGATAATGAGGGAGGAAATGGAGAAAGATTTATCCTTGTTAGCTAGATAGGTCTTGTACTACCAGTTTGGAGGGAAGAGAATTAAAA TTTCATTGAAAGCCCTAAACCTCGCGGAGAGAAATCTTTGGATGGCTACGAGCAACAACCTCCATGGCTCTGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGAAATAAAAGCGCGTGTCGATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCTATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGATTACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGATTAATAAACCATCAAGAGAAGCAAGCTCTGTGGAGAATGTGCCGTAAGTATTAAGGTTGTTCTTGAATTTCTTGTGCGTATCACTTCCAATAGGCAGTACAGTCGGCTCGGATGATTTGGAAGTGAGTAATGGTTCATTGTGTGCCCATAGCGTATTCTGATATCTGCCTGACAAAAACTGCAAATCATGCTTCGATGTAAATCTTGGTCTCCTACCATCAGAAAGATTTCTTGTAGCACTTATCTTTCTTCTGTTGTTGTGTACACGGTTGTTACTCAACGGATTAAGGCATCTTTACCAATATGAGCATAGCTTAGCCGGTATAAAGTATGTGTTATCAACAAAAAGATCAGAGGTTTGAATTTTTATCTCTCATATTATTGAGCTAAAGAAATGATATTTATTTACCATGCAAGGTAGAGATGTTTATTGAAGCTGTAGAATAGGGCTCGTAGAAACGGAGAATGATAATGAGGGAGGAAATGGAGAAAGATTTATCCTTGTTAGCTAGATAGGTCTTGTACTACCAGTTTGGAGGGAAGAGAATTAAAA ATGGCTACGAGCAACAACCTCCATGGCTCTGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGAAATAAAAGCGCGTGTCGATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCTATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGATTACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGA
BLAST of CmoCh17G003800 vs. Swiss-Prot
Match: CFDP1_CHICK (Craniofacial development protein 1 OS=Gallus gallus GN=CFDP1 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.2e-14 Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 1
BLAST of CmoCh17G003800 vs. Swiss-Prot
Match: CFDP1_MOUSE (Craniofacial development protein 1 OS=Mus musculus GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.3e-13 Identity = 66/204 (32.35%), Postives = 104/204 (50.98%), Query Frame = 1
BLAST of CmoCh17G003800 vs. Swiss-Prot
Match: CFDP1_RAT (Craniofacial development protein 1 OS=Rattus norvegicus GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 9.7e-13 Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 1
BLAST of CmoCh17G003800 vs. Swiss-Prot
Match: CFDP1_HUMAN (Craniofacial development protein 1 OS=Homo sapiens GN=CFDP1 PE=1 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.7e-12 Identity = 74/255 (29.02%), Postives = 119/255 (46.67%), Query Frame = 1
BLAST of CmoCh17G003800 vs. Swiss-Prot
Match: CFDP1_BOVIN (Craniofacial development protein 1 OS=Bos taurus GN=CFDP1 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 4.8e-12 Identity = 79/254 (31.10%), Postives = 118/254 (46.46%), Query Frame = 1
BLAST of CmoCh17G003800 vs. TrEMBL
Match: A0A0A0K9U3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G00090 PE=4 SV=1) HSP 1 Score: 446.4 bits (1147), Expect = 2.3e-122 Identity = 241/261 (92.34%), Postives = 251/261 (96.17%), Query Frame = 1
BLAST of CmoCh17G003800 vs. TrEMBL
Match: A0A059B5E6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04085 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 3.2e-79 Identity = 170/262 (64.89%), Postives = 204/262 (77.86%), Query Frame = 1
BLAST of CmoCh17G003800 vs. TrEMBL
Match: M5XC64_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009838mg PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 1.0e-77 Identity = 178/275 (64.73%), Postives = 206/275 (74.91%), Query Frame = 1
BLAST of CmoCh17G003800 vs. TrEMBL
Match: W9RWY2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026151 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 2.8e-75 Identity = 161/237 (67.93%), Postives = 189/237 (79.75%), Query Frame = 1
BLAST of CmoCh17G003800 vs. TrEMBL
Match: A0A0B2R3C8_GLYSO (Craniofacial development protein 1 OS=Glycine soja GN=glysoja_023983 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 4.8e-75 Identity = 164/255 (64.31%), Postives = 196/255 (76.86%), Query Frame = 1
BLAST of CmoCh17G003800 vs. TAIR10
Match: AT5G30490.1 (AT5G30490.1 Craniofacial development protein 1/Bucentaur (InterPro:IPR011421)) HSP 1 Score: 214.5 bits (545), Expect = 7.6e-56 Identity = 135/244 (55.33%), Postives = 177/244 (72.54%), Query Frame = 1
BLAST of CmoCh17G003800 vs. NCBI nr
Match: gi|449441514|ref|XP_004138527.1| (PREDICTED: craniofacial development protein 1 isoform X1 [Cucumis sativus]) HSP 1 Score: 446.4 bits (1147), Expect = 3.4e-122 Identity = 241/261 (92.34%), Postives = 251/261 (96.17%), Query Frame = 1
BLAST of CmoCh17G003800 vs. NCBI nr
Match: gi|659116900|ref|XP_008458319.1| (PREDICTED: LOW QUALITY PROTEIN: craniofacial development protein 1 [Cucumis melo]) HSP 1 Score: 444.9 bits (1143), Expect = 9.8e-122 Identity = 239/261 (91.57%), Postives = 249/261 (95.40%), Query Frame = 1
BLAST of CmoCh17G003800 vs. NCBI nr
Match: gi|449441516|ref|XP_004138528.1| (PREDICTED: craniofacial development protein 1 isoform X2 [Cucumis sativus]) HSP 1 Score: 430.3 bits (1105), Expect = 2.5e-117 Identity = 233/252 (92.46%), Postives = 242/252 (96.03%), Query Frame = 1
BLAST of CmoCh17G003800 vs. NCBI nr
Match: gi|1009163717|ref|XP_015900111.1| (PREDICTED: craniofacial development protein 1-like [Ziziphus jujuba]) HSP 1 Score: 305.8 bits (782), Expect = 7.1e-80 Identity = 176/265 (66.42%), Postives = 203/265 (76.60%), Query Frame = 1
BLAST of CmoCh17G003800 vs. NCBI nr
Match: gi|702447130|ref|XP_010024829.1| (PREDICTED: craniofacial development protein 1 [Eucalyptus grandis]) HSP 1 Score: 303.1 bits (775), Expect = 4.6e-79 Identity = 170/262 (64.89%), Postives = 204/262 (77.86%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |