CmoCh16G011970 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G011970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NADH dehydrogenase 1 beta subcomplex subunit 8
Location	Cmo_Chr16 : 8542766 .. 8547943 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAATTTTTTCCCCAAAATTAATTGTAAATTCTGATAACAAAGAAACCAAGGGCATTACTTTTCCCCCATTGCTCTGAAGAACAATCACTCAAAACAAGAACGGACGACGATCTTGGAATTTTGAAGAGGGAAAAATCTCCGAAAATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCGTAAGCATTTCACCCTTCTACCTCCAAATTTGTTGCAAAATTAGTATCTCTTCGATGTAGATTATGTAGGACTTATGATCATTTTTCCATTTTTAGCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGGTATCTCGATTCTCTTGAGGATTTTGTATTTTCATTTCTCCGACAATTTGTATGTTTATTTTGTTTTTGTTCTTGTTCAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGTAAGTTTACTGAACTAGACATCTTTTGTGGATCTTTTGTACTCCGTTCTCTGTTGGACTATTTGATATCTTACCTGCATTGGTGCTTGACTGTTGAAGGATACATTTGTTGTTTGTTTTTCATTACTGTAACGGCCAAGTCCACCGCTAGTAGATATTATCTTCCTTGGACTTTCCCTAAAGGTTTTAAAACACGTCTCGTAGGGGGAAGTTTCCACACCCTTATAATCAATGCTTCATTCTCCTCTCCAATTGATGGTGGGATCTCACAATCCACCCTCTTGGGGGCCAGCATCCTCGCTGGCACACCTCCCGGTGTCTGGCTCTGAAACCATTTGTAATGGTCTAAGCCCATTGCGGACAGATATTGTCCTGTTTGGGCTTTTCCTTCCGGGCTTCACCTTAAGGTTTTAAAATGCGTATCTCGTAGAGAGAGGTTTCTACACCCTTAGGGATGCTTCGTTCTCCTCTCCAACTGATGTGGGATCTCACCATTACCGTGCATTTTGTGAAATATGGTGGTACTCAGTTCAGTGCATTATTTGGATTGAATTTTCTTTTCTCATGAAATCATATTGGGATAATTGTGCTATGTATACCGCATTTTATTTCTTTTGAGATGGGCTGAGCTAGAGAAATAACTCTTGAGATGTCTAACTTATAATTTGGTGCAAAGCAGAACAGTTTTCTAGATTAATTCTATCCTTCCCCACTATGAGTATCTGTGTAACATTCCTAGCCCAGTAGTAAGAGATTTTGCTAACCGTAGTACCAGGTCAAAGAGCTTGTTATGACTCGCGATTCGTTTTTTGTAGACCCTGGCCTGATGCAAGGCATCCTTATTGACGGGCACACCTTTTTCAATAACTGGAGTGTTATTCTCCCTTCTATGTCCAAGCAATGAGGTTCTGGGAGAGTAAGAAGGATAATAGGAGCATGTTAGAGGAGTTAGACAGCAGGGAAGGAAAGGGAGATGAGAGGTTATTATTAATATTGAATCATAGTCTTAACACTCTCGTTCCATTTGTGTGCGTGAAAATTAGTAAAAGGCTCAACAAGTGATCCTTAATATTAATTGAGAAAAGGAAATTACTAGCTTTTAAACTTATCTTTTGCTCTTATACCCTGTTGGTTGATCATTAGAACATCCAAAAGCTTAAACTGATAGGTTTTGGTATGTTCAATATTTATTCTTATTCTTAATCTGGAGAAGTTATCTTAGTTGGACGTTGGAGAAAGTCATCTTGAATCTAGCCTTTGGGAATAAAGGGCATGTTTATGGCTGGCCTAGCCTATTCCCTCAACATCATGTGGTTAGTTTGATTGGATAGAAATAGATCTTTTCTTGGGTTTATGAAAGACAACTCCAACTCAAAGGAATGACAACAAATATCTCCAATTGGGAAAAAGAGAAGCAAAACTATAAGAATGGAATTATTATGTAATTTACACCAAGAGCTAGGTAGATGACATTATCGAGGAATCTATAATAATCACAATCTTTCCCACAAAAGGCCTTTGATTTTTCCCCAACCAAGTAGACCAAAAGAAGGCCCGAACGTGGTGTTTCCATAGTAGCTCATTCTCTTTCTTAAAAGGATGACCCACGAGAGTATGAGAAAGAAGCACTTTTGGGTCTTTTGGAAGAGCCATGGTCCTGTTGAAGGAGGATAACATTTCGACCCAAATCCTTGATGCCAAAGAAGTGAGTAGGGGTATCCTCCTTTCATTATTTCAAGTACAACAAGTGAGTAGGGGTATCCTCCTACCATTTTTAAGAACAAGTGAGTAAGGGTAGGGGTATGAGGGATTTTCAAGAAACAACATTTCGTTGAAAATAATGAATATTCAAACAAAGAAAGGGGCGTGCAAAAATACTAGCTCCAAAAGATGGTCCATCCTCAACTACGGAGGAACTTACCAATCCATTGTGTCCTAACTGATAGTTATAAAGCTCTCTAGAAACTGAAGCCCACAAAGAGGTTGGAAATTTGACATTTTCTCACACTTCTTCCTCAGATCTCTCACAACCTTTGAAAATTCTACTACCACTCGAGCCATGTACCCCAGAAAACTGCAAAAGACGCATGCCAAATGACCCAAAAATCTCTAGTTTGCATTCCATAGAACTTCCTCCATTATTGAGCAACAATCCCTATTAGTACCTACAAGTCCTAAATGACCCAAAAAAATTGTCCAAAAGCGAGTTGGCAATCTGACAACTCTATAGAAAATTGTTAAGGTACTCAGAACCTGTCTACAATACATAAGGTCCTCCACTGAGTACTCAGCAAGAAGGAAGAAGGCTTCCGATGGCAATCCTCCCCTGTAATACCTGCCACACAAAGAATATTACCTTCTGGTGGATCTTAACCTTCCAGAGAGAGGCAAATAGAAGGGTACCAAGGGGGACGAAGACACAAAGGAGGTGAAAATAAGAAATGCAAGAGGAGGATTGTGCAAGGAGATGCAGCCACAAACAAAGGCTGATCGTAATTGTTGACAGATGCATTAGAAGCGACGTTAGGACACCCTATAGTTTCTCCAGCCTACAGCAAATTGGGCCTTCTTTTCTTTTTGACCCAGGATAGTCTCCTCTGAAAAAAGAGCCTGATTTAAAAGATTTATCTGAGCTGCACACGCCCTCTTGGAAATCGAAGGGGACCCACTCTTTGCAGTTTGAAACACTTCACCTGGTTGCTAGAATACACTTGGCTACCTGTCTTAGACGTCAAAATCAACTTCTGAAAGAGCGTCAAAAAAGGAAGGTGAACTTCTGAAAGAGCGTCCAACTAAGATATAAACCATTTTTAGCTGATATTGACATATCTGATAGTTGGGAAAACAAAAGCTAAAATTGAACCCGCTACTGACCAACTCTTCCATTTTTCCAACTGTGAAGACACGAGATAAGAGAATGGAAGCAACTTTATTGAAAGTTTTTCCTGTATTCCTTTTTGCCCCAAAAAAGATTCTTTCACCCACAAACCTCACAGAAAGGGAATGTGATATCCCCACAGAGCCAATGGGTTATGAAAATAGACTCCCAATGGGCATTAATATGCACGAGGTCATCATTACGGAAGCCTCGAGAGAGGGTGCACCAAGTGGAGTCAAAATTTTTCACAAGATCCCCTAATTCCTCAAGAGTACGCTATTTCCCTTTAGAAGTTCTTTGGTTTCTCTTGAACCAGTCTCCAAAGATTGGCTGTCATGGCGTTGGACCATAAAACAAGAGCCTGCCCTTGAAAGGAGAGCCTTCCAAAAGCCGGTAAGGGGTGGTTTAACAATCTTTTGGGGACACTAGTCTAAGCCAAAAGAATGAAAGAGCTTTGATTTCGATGAACTAGCAGCCATGAAAGGGCCATTGCAAAGATACGTGAGGATGACTCTCTAAATTACTTTTTCACATGATGCATCAGGTAGTGCAAACTGGCATATTTGGGAGTTTCCTTTGGATCCAAGAACTAGTTTTCAATGTTCTTGAATAAAAGATCAAGGGAAAACTTTCATCTTCTTTGGAACCTTGGCCTTTCAAATCACACTGATTTGGAATTAATGAACAGCGTGGGAATATCTACCTTCTAGAATCCTGCTGGGTGCTAGGCTGATCGTGGCTGATCAGGTTTTGGAGTCTAATTCAATATCAGACAGATTCCTTCTAAACTGCAATTTCTACGGGTGGGTGTCTTATGACCAGCAATGATTCATGGTGAAGTGCTTTGATTTCGCTACACTGTCAAGTCTTTGGAAGGAAAGTTTGAGAGGGCTACTACCTGTCAGCCCTCTCCCCAGAAAATTTCATCTTCTTAGGAGTGAAATTCCGAAGCTTTGTGAAAAAGGAGATGGATATATAGGCAAATGTTTTCAACTTGGATTATAGCTTAGCTACTTACGACATATGCTTTTGACTAAGAGGTCAGAAATTCAAATTAAGAGGTCAAAAGTTTAAATCTCTCCTTGCAAATATGCGAAAAAGAATATACGGGCAAGTGTTTCTTCCAAATATAGGTTCCACAGAGAATGTATTCTTGTTGTGGTTGTTTGTATAGCCTGGCCTTGTATACTTTATGGTGTTTTTCAGTCGTTACGTTTACTTGACATTTGCATAGAAATCGAACTATTGGCCGTGTTTCAACTCTTTGAAGCCTTGATGTTTTATTTTCTGGATGAATTTAGCATTGATAAGATGATTGATAATAAACTTGATCCTCCTTTTAATCAGGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAGATAGGCGGCCTCACGCTGAATGGACCCTTTTGGTACTGTTTCTTTTCAGATACAAATCGTTGTTGAATTATATGCCTTTGGAATTTGCTTTGCATCAAAATAAATGGATTTTGTTGCCTGTTCTGAAATCTCTATTTGGCATTGTGTAAATCACGTTCTACACTTTGATTCTTATAACGAGGTTCTCAAGACTTCTTGCCATCAATGATGGATAATGAATGATTCAATAAGTTATCATTTTGTGTTA

mRNA sequence

TGCAATTTTTTCCCCAAAATTAATTGTAAATTCTGATAACAAAGAAACCAAGGGCATTACTTTTCCCCCATTGCTCTGAAGAACAATCACTCAAAACAAGAACGGACGACGATCTTGGAATTTTGAAGAGGGAAAAATCTCCGAAAATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAGATAGGCGGCCTCACGCTGAATGGACCCTTTTGGTACTGTTTCTTTTCAGATACAAATCGTTGTTGAATTATATGCCTTTGGAATTTGCTTTGCATCAAAATAAATGGATTTTGTTGCCTGTTCTGAAATCTCTATTTGGCATTGTGTAAATCACGTTCTACACTTTGATTCTTATAACGAGGTTCTCAAGACTTCTTGCCATCAATGATGGATAATGAATGATTCAATAAGTTATCATTTTGTGTTA

Coding sequence (CDS)

ATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAG

Homology

[Close]

BLAST of CmoCh16G011970 vs. Swiss-Prot
Match: NDUB8_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-58
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS + SRI+GGNGVVARS+ SSLR+R+GMGLPVGKHIVP+KPL VNDEL+WDNGT 
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWL GGLGFF  LG LAV NDKASK+PF P+VYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. TrEMBL
Match: A0A0A0L5J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G021140 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.0e-64
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAG+L+NLGS+ILGGNGVV RSI SSLR RSGMGLPVGKHIVP+KPLP NDELVWDNGTP
Sbjct: 1   MAGKLTNLGSKILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPENDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEPEA 128
           LGG+PEA
Sbjct: 121 LGGDPEA 127

[Close]

BLAST of CmoCh16G011970 vs. TrEMBL
Match: W9R278_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019050 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.6e-62
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLSN+ S+I+GGNGVV RS+ SSLR RSGMGLPVGKHIVP KPLPVNDELVWDNGTP
Sbjct: 1   MAGRLSNVASKIMGGNGVVCRSVASSLRLRSGMGLPVGKHIVPEKPLPVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. TrEMBL
Match: M5X4A1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013399mg PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.6e-60
Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS++ S+I+GGNGVV+RS+ SSLR R+GMGLPVGKHIVPN+PL VNDELVWDNGTP
Sbjct: 1   MAGRLSSVASKIMGGNGVVSRSVASSLRLRAGMGLPVGKHIVPNRPLHVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGL FFASLG LAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLSFFASLGLLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. TrEMBL
Match: B9RWJ3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1020190 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.6e-60
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 2   AGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTPF 61
           AGRLSN+ SRI+GGNGVV+RSI SSLR RSGMGLPVGKHIVP+KPLPVN+ELVWDNGTPF
Sbjct: 3   AGRLSNVASRIMGGNGVVSRSIGSSLRLRSGMGLPVGKHIVPDKPLPVNEELVWDNGTPF 62

Query: 62  PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVEL 121
           PEPCIDRIADTVGKYEALAWLCGGL FFASLG LAVWNDKASKIP+ PKVYPYDNLR EL
Sbjct: 63  PEPCIDRIADTVGKYEALAWLCGGLSFFASLGLLAVWNDKASKIPYVPKVYPYDNLRAEL 122

Query: 122 GGEP 126
           GGEP
Sbjct: 123 GGEP 126

[Close]

BLAST of CmoCh16G011970 vs. TrEMBL
Match: A0A059C1D2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00445 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.1e-60
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS++ SRI+GGNGVVARS  SSLR R+GMGLPVGKHIVP+KPL VNDELVWDNGT 
Sbjct: 1   MAGRLSHVASRIMGGNGVVARSAASSLRLRAGMGLPVGKHIVPDKPLHVNDELVWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. TAIR10
Match: AT5G47570.1 (AT5G47570.1 unknown protein)

HSP 1 Score: 224.9 bits (572), Expect = 2.7e-59
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS + SRI+GGNGVVARS+ SSLR+R+GMGLPVGKHIVP+KPL VNDEL+WDNGT 
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWL GGLGFF  LG LAV NDKASK+PF P+VYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. NCBI nr
Match: gi|449458928|ref|XP_004147198.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAG+L+NLGS+ILGGNGVV RSI SSLR RSGMGLPVGKHIVP+KPLP NDELVWDNGTP
Sbjct: 1   MAGKLTNLGSKILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPENDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEPEA 128
           LGG+PEA
Sbjct: 121 LGGDPEA 127

[Close]

BLAST of CmoCh16G011970 vs. NCBI nr
Match: gi|703089104|ref|XP_010093709.1| (hypothetical protein L484_019050 [Morus notabilis])

HSP 1 Score: 244.6 bits (623), Expect = 9.4e-62
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLSN+ S+I+GGNGVV RS+ SSLR RSGMGLPVGKHIVP KPLPVNDELVWDNGTP
Sbjct: 1   MAGRLSNVASKIMGGNGVVCRSVASSLRLRSGMGLPVGKHIVPEKPLPVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. NCBI nr
Match: gi|747048218|ref|XP_011070110.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 241.9 bits (616), Expect = 6.1e-61
Identity = 112/125 (89.60%), Postives = 120/125 (96.00%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS++ SRI+GGNG+V+RS  +SLR+RSGMGLPVGKHIVP+KPLPVNDELVWDNGT 
Sbjct: 1   MAGRLSHVASRIMGGNGIVSRSAAASLRQRSGMGLPVGKHIVPDKPLPVNDELVWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. NCBI nr
Match: gi|720026393|ref|XP_010264244.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 241.9 bits (616), Expect = 6.1e-61
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLSN+ SRI+GGNGV+ RS+ SSLR RSGMGLPVGKHI+P+KPLPVNDEL+WDNGTP
Sbjct: 1   MAGRLSNVASRIMGGNGVIGRSVASSLRLRSGMGLPVGKHIIPDKPLPVNDELLWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPC+DRIADTVGKYEALAWLCGGLGFFASLG L VWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCLDRIADTVGKYEALAWLCGGLGFFASLGLLVVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970 vs. NCBI nr
Match: gi|720009594|ref|XP_010258983.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 241.5 bits (615), Expect = 8.0e-61
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           M+GRLSN+ SRI+GGNGVV RS+ SSLR RSGMGLPVGKHIVP KPLPVNDELVWDNGTP
Sbjct: 1   MSGRLSNVASRIMGGNGVVGRSVASSLRLRSGMGLPVGKHIVPEKPLPVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPC+DRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKAS IPF PKVYPYDNLRVE
Sbjct: 61  FPEPCLDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASXIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

The following BLAST results are available for this feature:

BLAST of CmoCh16G011970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUB8_ARATH	4.8e-58	84.00	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Ar...	[more]

BLAST of CmoCh16G011970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5J8_CUCSA	7.0e-64	92.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G021140 PE=4 SV=1	[more]
W9R278_9ROSA	6.6e-62	91.20	Uncharacterized protein OS=Morus notabilis GN=L484_019050 PE=4 SV=1	[more]
M5X4A1_PRUPE	3.6e-60	88.80	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013399mg PE=4 SV=1	[more]
B9RWJ3_RICCO	3.6e-60	89.52	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1020190 PE=4 SV=1	[more]
A0A059C1D2_EUCGR	6.1e-60	90.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00445 PE=4 SV=1	[more]

BLAST of CmoCh16G011970 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47570.1	2.7e-59	84.00	unknown protein	[more]

BLAST of CmoCh16G011970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458928\|ref\|XP_004147198.1\|	1.0e-63	92.91	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|703089104\|ref\|XP_010093709.1\|	9.4e-62	91.20	hypothetical protein L484_019050 [Morus notabilis]	[more]
gi\|747048218\|ref\|XP_011070110.1\|	6.1e-61	89.60	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|720026393\|ref\|XP_010264244.1\|	6.1e-61	88.00	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|720009594\|ref\|XP_010258983.1\|	8.0e-61	89.60	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G011970.1	CmoCh16G011970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36401	FAMILY NOT NAMED	coord: 2..126 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G011970	Cucsa.320810	Cucumber (Gy14) v1	cgycmoB0887
CmoCh16G011970	CmaCh16G011460	Cucurbita maxima (Rimu)	cmacmoB323
CmoCh16G011970	CmaCh06G007760	Cucurbita maxima (Rimu)	cmacmoB806
CmoCh16G011970	Cla005656	Watermelon (97103) v1	cmowmB288
CmoCh16G011970	Csa3G021140	Cucumber (Chinese Long) v2	cmocuB308
CmoCh16G011970	MELO3C013951	Melon (DHL92) v3.5.1	cmomeB291
CmoCh16G011970	ClCG10G002830	Watermelon (Charleston Gray)	cmowcgB272
CmoCh16G011970	CSPI03G02810	Wild cucumber (PI 183967)	cmocpiB316
CmoCh16G011970	Lsi07G013110	Bottle gourd (USVL1VR-Ls)	cmolsiB311
CmoCh16G011970	Cp4.1LG14g09440	Cucurbita pepo (Zucchini)	cmocpeB308
CmoCh16G011970	Cp4.1LG08g07450	Cucurbita pepo (Zucchini)	cmocpeB328
CmoCh16G011970	MELO3C013951.2	Melon (DHL92) v3.6.1	cmomedB321
CmoCh16G011970	CsaV3_3G002850	Cucumber (Chinese Long) v3	cmocucB0371
CmoCh16G011970	Cla97C10G187360	Watermelon (97103) v2	cmowmbB315
CmoCh16G011970	Bhi11G000176	Wax gourd	cmowgoB0408
CmoCh16G011970	CsGy3G002740	Cucumber (Gy14) v2	cgybcmoB302
CmoCh16G011970	Carg25165	Silver-seed gourd	carcmoB0719
CmoCh16G011970	Carg26184	Silver-seed gourd	carcmoB0677

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G011970	CmoCh06G007960	Cucurbita moschata (Rifu)	cmocmoB294

The following block(s) are covering this gene:

None