CmoCh16G011970.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G011970.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NADH dehydrogenase 1 beta subcomplex subunit 8
Location	Cmo_Chr16 : 8542766 .. 8547943 (+)
Sequence length	777

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAATTTTTTCCCCAAAATTAATTGTAAATTCTGATAACAAAGAAACCAAGGGCATTACTTTTCCCCCATTGCTCTGAAGAACAATCACTCAAAACAAGAACGGACGACGATCTTGGAATTTTGAAGAGGGAAAAATCTCCGAAAATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCGTAAGCATTTCACCCTTCTACCTCCAAATTTGTTGCAAAATTAGTATCTCTTCGATGTAGATTATGTAGGACTTATGATCATTTTTCCATTTTTAGCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGGTATCTCGATTCTCTTGAGGATTTTGTATTTTCATTTCTCCGACAATTTGTATGTTTATTTTGTTTTTGTTCTTGTTCAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGTAAGTTTACTGAACTAGACATCTTTTGTGGATCTTTTGTACTCCGTTCTCTGTTGGACTATTTGATATCTTACCTGCATTGGTGCTTGACTGTTGAAGGATACATTTGTTGTTTGTTTTTCATTACTGTAACGGCCAAGTCCACCGCTAGTAGATATTATCTTCCTTGGACTTTCCCTAAAGGTTTTAAAACACGTCTCGTAGGGGGAAGTTTCCACACCCTTATAATCAATGCTTCATTCTCCTCTCCAATTGATGGTGGGATCTCACAATCCACCCTCTTGGGGGCCAGCATCCTCGCTGGCACACCTCCCGGTGTCTGGCTCTGAAACCATTTGTAATGGTCTAAGCCCATTGCGGACAGATATTGTCCTGTTTGGGCTTTTCCTTCCGGGCTTCACCTTAAGGTTTTAAAATGCGTATCTCGTAGAGAGAGGTTTCTACACCCTTAGGGATGCTTCGTTCTCCTCTCCAACTGATGTGGGATCTCACCATTACCGTGCATTTTGTGAAATATGGTGGTACTCAGTTCAGTGCATTATTTGGATTGAATTTTCTTTTCTCATGAAATCATATTGGGATAATTGTGCTATGTATACCGCATTTTATTTCTTTTGAGATGGGCTGAGCTAGAGAAATAACTCTTGAGATGTCTAACTTATAATTTGGTGCAAAGCAGAACAGTTTTCTAGATTAATTCTATCCTTCCCCACTATGAGTATCTGTGTAACATTCCTAGCCCAGTAGTAAGAGATTTTGCTAACCGTAGTACCAGGTCAAAGAGCTTGTTATGACTCGCGATTCGTTTTTTGTAGACCCTGGCCTGATGCAAGGCATCCTTATTGACGGGCACACCTTTTTCAATAACTGGAGTGTTATTCTCCCTTCTATGTCCAAGCAATGAGGTTCTGGGAGAGTAAGAAGGATAATAGGAGCATGTTAGAGGAGTTAGACAGCAGGGAAGGAAAGGGAGATGAGAGGTTATTATTAATATTGAATCATAGTCTTAACACTCTCGTTCCATTTGTGTGCGTGAAAATTAGTAAAAGGCTCAACAAGTGATCCTTAATATTAATTGAGAAAAGGAAATTACTAGCTTTTAAACTTATCTTTTGCTCTTATACCCTGTTGGTTGATCATTAGAACATCCAAAAGCTTAAACTGATAGGTTTTGGTATGTTCAATATTTATTCTTATTCTTAATCTGGAGAAGTTATCTTAGTTGGACGTTGGAGAAAGTCATCTTGAATCTAGCCTTTGGGAATAAAGGGCATGTTTATGGCTGGCCTAGCCTATTCCCTCAACATCATGTGGTTAGTTTGATTGGATAGAAATAGATCTTTTCTTGGGTTTATGAAAGACAACTCCAACTCAAAGGAATGACAACAAATATCTCCAATTGGGAAAAAGAGAAGCAAAACTATAAGAATGGAATTATTATGTAATTTACACCAAGAGCTAGGTAGATGACATTATCGAGGAATCTATAATAATCACAATCTTTCCCACAAAAGGCCTTTGATTTTTCCCCAACCAAGTAGACCAAAAGAAGGCCCGAACGTGGTGTTTCCATAGTAGCTCATTCTCTTTCTTAAAAGGATGACCCACGAGAGTATGAGAAAGAAGCACTTTTGGGTCTTTTGGAAGAGCCATGGTCCTGTTGAAGGAGGATAACATTTCGACCCAAATCCTTGATGCCAAAGAAGTGAGTAGGGGTATCCTCCTTTCATTATTTCAAGTACAACAAGTGAGTAGGGGTATCCTCCTACCATTTTTAAGAACAAGTGAGTAAGGGTAGGGGTATGAGGGATTTTCAAGAAACAACATTTCGTTGAAAATAATGAATATTCAAACAAAGAAAGGGGCGTGCAAAAATACTAGCTCCAAAAGATGGTCCATCCTCAACTACGGAGGAACTTACCAATCCATTGTGTCCTAACTGATAGTTATAAAGCTCTCTAGAAACTGAAGCCCACAAAGAGGTTGGAAATTTGACATTTTCTCACACTTCTTCCTCAGATCTCTCACAACCTTTGAAAATTCTACTACCACTCGAGCCATGTACCCCAGAAAACTGCAAAAGACGCATGCCAAATGACCCAAAAATCTCTAGTTTGCATTCCATAGAACTTCCTCCATTATTGAGCAACAATCCCTATTAGTACCTACAAGTCCTAAATGACCCAAAAAAATTGTCCAAAAGCGAGTTGGCAATCTGACAACTCTATAGAAAATTGTTAAGGTACTCAGAACCTGTCTACAATACATAAGGTCCTCCACTGAGTACTCAGCAAGAAGGAAGAAGGCTTCCGATGGCAATCCTCCCCTGTAATACCTGCCACACAAAGAATATTACCTTCTGGTGGATCTTAACCTTCCAGAGAGAGGCAAATAGAAGGGTACCAAGGGGGACGAAGACACAAAGGAGGTGAAAATAAGAAATGCAAGAGGAGGATTGTGCAAGGAGATGCAGCCACAAACAAAGGCTGATCGTAATTGTTGACAGATGCATTAGAAGCGACGTTAGGACACCCTATAGTTTCTCCAGCCTACAGCAAATTGGGCCTTCTTTTCTTTTTGACCCAGGATAGTCTCCTCTGAAAAAAGAGCCTGATTTAAAAGATTTATCTGAGCTGCACACGCCCTCTTGGAAATCGAAGGGGACCCACTCTTTGCAGTTTGAAACACTTCACCTGGTTGCTAGAATACACTTGGCTACCTGTCTTAGACGTCAAAATCAACTTCTGAAAGAGCGTCAAAAAAGGAAGGTGAACTTCTGAAAGAGCGTCCAACTAAGATATAAACCATTTTTAGCTGATATTGACATATCTGATAGTTGGGAAAACAAAAGCTAAAATTGAACCCGCTACTGACCAACTCTTCCATTTTTCCAACTGTGAAGACACGAGATAAGAGAATGGAAGCAACTTTATTGAAAGTTTTTCCTGTATTCCTTTTTGCCCCAAAAAAGATTCTTTCACCCACAAACCTCACAGAAAGGGAATGTGATATCCCCACAGAGCCAATGGGTTATGAAAATAGACTCCCAATGGGCATTAATATGCACGAGGTCATCATTACGGAAGCCTCGAGAGAGGGTGCACCAAGTGGAGTCAAAATTTTTCACAAGATCCCCTAATTCCTCAAGAGTACGCTATTTCCCTTTAGAAGTTCTTTGGTTTCTCTTGAACCAGTCTCCAAAGATTGGCTGTCATGGCGTTGGACCATAAAACAAGAGCCTGCCCTTGAAAGGAGAGCCTTCCAAAAGCCGGTAAGGGGTGGTTTAACAATCTTTTGGGGACACTAGTCTAAGCCAAAAGAATGAAAGAGCTTTGATTTCGATGAACTAGCAGCCATGAAAGGGCCATTGCAAAGATACGTGAGGATGACTCTCTAAATTACTTTTTCACATGATGCATCAGGTAGTGCAAACTGGCATATTTGGGAGTTTCCTTTGGATCCAAGAACTAGTTTTCAATGTTCTTGAATAAAAGATCAAGGGAAAACTTTCATCTTCTTTGGAACCTTGGCCTTTCAAATCACACTGATTTGGAATTAATGAACAGCGTGGGAATATCTACCTTCTAGAATCCTGCTGGGTGCTAGGCTGATCGTGGCTGATCAGGTTTTGGAGTCTAATTCAATATCAGACAGATTCCTTCTAAACTGCAATTTCTACGGGTGGGTGTCTTATGACCAGCAATGATTCATGGTGAAGTGCTTTGATTTCGCTACACTGTCAAGTCTTTGGAAGGAAAGTTTGAGAGGGCTACTACCTGTCAGCCCTCTCCCCAGAAAATTTCATCTTCTTAGGAGTGAAATTCCGAAGCTTTGTGAAAAAGGAGATGGATATATAGGCAAATGTTTTCAACTTGGATTATAGCTTAGCTACTTACGACATATGCTTTTGACTAAGAGGTCAGAAATTCAAATTAAGAGGTCAAAAGTTTAAATCTCTCCTTGCAAATATGCGAAAAAGAATATACGGGCAAGTGTTTCTTCCAAATATAGGTTCCACAGAGAATGTATTCTTGTTGTGGTTGTTTGTATAGCCTGGCCTTGTATACTTTATGGTGTTTTTCAGTCGTTACGTTTACTTGACATTTGCATAGAAATCGAACTATTGGCCGTGTTTCAACTCTTTGAAGCCTTGATGTTTTATTTTCTGGATGAATTTAGCATTGATAAGATGATTGATAATAAACTTGATCCTCCTTTTAATCAGGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAGATAGGCGGCCTCACGCTGAATGGACCCTTTTGGTACTGTTTCTTTTCAGATACAAATCGTTGTTGAATTATATGCCTTTGGAATTTGCTTTGCATCAAAATAAATGGATTTTGTTGCCTGTTCTGAAATCTCTATTTGGCATTGTGTAAATCACGTTCTACACTTTGATTCTTATAACGAGGTTCTCAAGACTTCTTGCCATCAATGATGGATAATGAATGATTCAATAAGTTATCATTTTGTGTTA

mRNA sequence

TGCAATTTTTTCCCCAAAATTAATTGTAAATTCTGATAACAAAGAAACCAAGGGCATTACTTTTCCCCCATTGCTCTGAAGAACAATCACTCAAAACAAGAACGGACGACGATCTTGGAATTTTGAAGAGGGAAAAATCTCCGAAAATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAGATAGGCGGCCTCACGCTGAATGGACCCTTTTGGTACTGTTTCTTTTCAGATACAAATCGTTGTTGAATTATATGCCTTTGGAATTTGCTTTGCATCAAAATAAATGGATTTTGTTGCCTGTTCTGAAATCTCTATTTGGCATTGTGTAAATCACGTTCTACACTTTGATTCTTATAACGAGGTTCTCAAGACTTCTTGCCATCAATGATGGATAATGAATGATTCAATAAGTTATCATTTTGTGTTA

Coding sequence (CDS)

ATGGCAGGCAGGCTGAGCAATTTGGGTTCAAGGATCCTTGGCGGAAACGGAGTTGTTGCTCGCTCAATTGATTCGTCTCTTCGACGTCGCTCCGGCATGGGCCTTCCTGTTGGCAAACACATCGTCCCCAATAAACCCCTTCCTGTGAACGATGAACTGGTATGGGACAATGGAACGCCTTTTCCCGAGCCTTGTATTGATCGTATTGCTGATACGGTTGGGAAGTACGAAGCCTTGGCTTGGTTATGTGGGGGATTGGGATTTTTTGCATCTCTGGGATTTCTGGCTGTGTGGAACGACAAAGCGTCTAAGATACCATTTGCGCCGAAAGTATATCCATATGACAACCTAAGAGTGGAGCTTGGTGGAGAACCAGAAGCTTAG

Homology

[Close]

BLAST of CmoCh16G011970.1 vs. Swiss-Prot
Match: NDUB8_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-58
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS + SRI+GGNGVVARS+ SSLR+R+GMGLPVGKHIVP+KPL VNDEL+WDNGT 
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWL GGLGFF  LG LAV NDKASK+PF P+VYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. TrEMBL
Match: A0A0A0L5J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G021140 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.0e-64
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAG+L+NLGS+ILGGNGVV RSI SSLR RSGMGLPVGKHIVP+KPLP NDELVWDNGTP
Sbjct: 1   MAGKLTNLGSKILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPENDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEPEA 128
           LGG+PEA
Sbjct: 121 LGGDPEA 127

[Close]

BLAST of CmoCh16G011970.1 vs. TrEMBL
Match: W9R278_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019050 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.6e-62
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLSN+ S+I+GGNGVV RS+ SSLR RSGMGLPVGKHIVP KPLPVNDELVWDNGTP
Sbjct: 1   MAGRLSNVASKIMGGNGVVCRSVASSLRLRSGMGLPVGKHIVPEKPLPVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. TrEMBL
Match: M5X4A1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013399mg PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.6e-60
Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS++ S+I+GGNGVV+RS+ SSLR R+GMGLPVGKHIVPN+PL VNDELVWDNGTP
Sbjct: 1   MAGRLSSVASKIMGGNGVVSRSVASSLRLRAGMGLPVGKHIVPNRPLHVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGL FFASLG LAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLSFFASLGLLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. TrEMBL
Match: B9RWJ3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1020190 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.6e-60
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 2   AGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTPF 61
           AGRLSN+ SRI+GGNGVV+RSI SSLR RSGMGLPVGKHIVP+KPLPVN+ELVWDNGTPF
Sbjct: 3   AGRLSNVASRIMGGNGVVSRSIGSSLRLRSGMGLPVGKHIVPDKPLPVNEELVWDNGTPF 62

Query: 62  PEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVEL 121
           PEPCIDRIADTVGKYEALAWLCGGL FFASLG LAVWNDKASKIP+ PKVYPYDNLR EL
Sbjct: 63  PEPCIDRIADTVGKYEALAWLCGGLSFFASLGLLAVWNDKASKIPYVPKVYPYDNLRAEL 122

Query: 122 GGEP 126
           GGEP
Sbjct: 123 GGEP 126

[Close]

BLAST of CmoCh16G011970.1 vs. TrEMBL
Match: A0A059C1D2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00445 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.1e-60
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS++ SRI+GGNGVVARS  SSLR R+GMGLPVGKHIVP+KPL VNDELVWDNGT 
Sbjct: 1   MAGRLSHVASRIMGGNGVVARSAASSLRLRAGMGLPVGKHIVPDKPLHVNDELVWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. TAIR10
Match: AT5G47570.1 (AT5G47570.1 unknown protein)

HSP 1 Score: 224.9 bits (572), Expect = 2.7e-59
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS + SRI+GGNGVVARS+ SSLR+R+GMGLPVGKHIVP+KPL VNDEL+WDNGT 
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWL GGLGFF  LG LAV NDKASK+PF P+VYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. NCBI nr
Match: gi|449458928|ref|XP_004147198.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAG+L+NLGS+ILGGNGVV RSI SSLR RSGMGLPVGKHIVP+KPLP NDELVWDNGTP
Sbjct: 1   MAGKLTNLGSKILGGNGVVGRSIASSLRLRSGMGLPVGKHIVPDKPLPENDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120

Query: 121 LGGEPEA 128
           LGG+PEA
Sbjct: 121 LGGDPEA 127

[Close]

BLAST of CmoCh16G011970.1 vs. NCBI nr
Match: gi|703089104|ref|XP_010093709.1| (hypothetical protein L484_019050 [Morus notabilis])

HSP 1 Score: 244.6 bits (623), Expect = 9.4e-62
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLSN+ S+I+GGNGVV RS+ SSLR RSGMGLPVGKHIVP KPLPVNDELVWDNGTP
Sbjct: 1   MAGRLSNVASKIMGGNGVVCRSVASSLRLRSGMGLPVGKHIVPEKPLPVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. NCBI nr
Match: gi|747048218|ref|XP_011070110.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 241.9 bits (616), Expect = 6.1e-61
Identity = 112/125 (89.60%), Postives = 120/125 (96.00%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLS++ SRI+GGNG+V+RS  +SLR+RSGMGLPVGKHIVP+KPLPVNDELVWDNGT 
Sbjct: 1   MAGRLSHVASRIMGGNGIVSRSAAASLRQRSGMGLPVGKHIVPDKPLPVNDELVWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. NCBI nr
Match: gi|720026393|ref|XP_010264244.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 241.9 bits (616), Expect = 6.1e-61
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           MAGRLSN+ SRI+GGNGV+ RS+ SSLR RSGMGLPVGKHI+P+KPLPVNDEL+WDNGTP
Sbjct: 1   MAGRLSNVASRIMGGNGVIGRSVASSLRLRSGMGLPVGKHIIPDKPLPVNDELLWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPC+DRIADTVGKYEALAWLCGGLGFFASLG L VWNDKASKIPF PKVYPYDNLRVE
Sbjct: 61  FPEPCLDRIADTVGKYEALAWLCGGLGFFASLGLLVVWNDKASKIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

[Close]

BLAST of CmoCh16G011970.1 vs. NCBI nr
Match: gi|720009594|ref|XP_010258983.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 241.5 bits (615), Expect = 8.0e-61
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 1


Query: 1   MAGRLSNLGSRILGGNGVVARSIDSSLRRRSGMGLPVGKHIVPNKPLPVNDELVWDNGTP 60
           M+GRLSN+ SRI+GGNGVV RS+ SSLR RSGMGLPVGKHIVP KPLPVNDELVWDNGTP
Sbjct: 1   MSGRLSNVASRIMGGNGVVGRSVASSLRLRSGMGLPVGKHIVPEKPLPVNDELVWDNGTP 60

Query: 61  FPEPCIDRIADTVGKYEALAWLCGGLGFFASLGFLAVWNDKASKIPFAPKVYPYDNLRVE 120
           FPEPC+DRIADTVGKYEALAWLCGGLGFFASLG LAVWNDKAS IPF PKVYPYDNLRVE
Sbjct: 61  FPEPCLDRIADTVGKYEALAWLCGGLGFFASLGLLAVWNDKASXIPFTPKVYPYDNLRVE 120

Query: 121 LGGEP 126
           LGGEP
Sbjct: 121 LGGEP 125

The following BLAST results are available for this feature:

BLAST of CmoCh16G011970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUB8_ARATH	4.8e-58	84.00	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Ar...	[more]

BLAST of CmoCh16G011970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5J8_CUCSA	7.0e-64	92.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G021140 PE=4 SV=1	[more]
W9R278_9ROSA	6.6e-62	91.20	Uncharacterized protein OS=Morus notabilis GN=L484_019050 PE=4 SV=1	[more]
M5X4A1_PRUPE	3.6e-60	88.80	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013399mg PE=4 SV=1	[more]
B9RWJ3_RICCO	3.6e-60	89.52	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1020190 PE=4 SV=1	[more]
A0A059C1D2_EUCGR	6.1e-60	90.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00445 PE=4 SV=1	[more]

BLAST of CmoCh16G011970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47570.1	2.7e-59	84.00	unknown protein	[more]

BLAST of CmoCh16G011970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458928\|ref\|XP_004147198.1\|	1.0e-63	92.91	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|703089104\|ref\|XP_010093709.1\|	9.4e-62	91.20	hypothetical protein L484_019050 [Morus notabilis]	[more]
gi\|747048218\|ref\|XP_011070110.1\|	6.1e-61	89.60	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|720026393\|ref\|XP_010264244.1\|	6.1e-61	88.00	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|720009594\|ref\|XP_010258983.1\|	8.0e-61	89.60	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh16G011970	CmoCh16G011970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh16G011970.1	CmoCh16G011970.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G011970.1.exon.4	CmoCh16G011970.1.exon.4	exon
CmoCh16G011970.1.exon.3	CmoCh16G011970.1.exon.3	exon
CmoCh16G011970.1.exon.2	CmoCh16G011970.1.exon.2	exon
CmoCh16G011970.1.exon.1	CmoCh16G011970.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G011970.1.five_prime_UTR.1	CmoCh16G011970.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G011970.1.CDS.1	CmoCh16G011970.1.CDS.1	CDS
CmoCh16G011970.1.CDS.2	CmoCh16G011970.1.CDS.2	CDS
CmoCh16G011970.1.CDS.3	CmoCh16G011970.1.CDS.3	CDS
CmoCh16G011970.1.CDS.4	CmoCh16G011970.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G011970.1.three_prime_UTR.1	CmoCh16G011970.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36401	FAMILY NOT NAMED	coord: 2..126 score: 4.5