CmoCh16G003380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G003380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Pectin lyase-like superfamily protein) (Polygalacturonase-like protein)
LocationCmo_Chr16 : 1568035 .. 1568767 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTACCGACATTATTTTTTCAAAACTGCACTGAGCTCCGACTACGAGAAACTAAGCACATCAATAGTGTCAAAAATCATATCTCCATAAACGCTTGCAATGATGCCATTATCTCAGACGTTCACATCATTGCTCCCGAAAACATCCCTAACACATACGGATTCAACGTTTCTAGATCAAACAATGTTGTTATTCAAAACTCCTTAATCGAAACAGGTATCAAATTTGTATTACTTTTTAGTTTTAATTTGTCTTCAAACTGTCTTAGAATTTCATAATGGCTTTCTAATTTTATCGTAGGTGACGAATGTATTTCTCTATACAATGGATCTTTTAATATCAATATCGTCGGTGTTACTTGTGGACCTGGTTACGGTATAAGGTACGAAAACGACATTTTCCGTATTATAATTTCATTGTTTTTGTATTAATTTGTAATTATTATCTTAATTTCTATAGCATTAGAAGCTTAGGAGAAGATGGAGGATATAACGTAATTGAAAACATCAATGTAAGCAATTGCACCTTAAAGGGCACTCAAAATGGATTGAGAATCAAGACTTCACAGGTTAATATAAGTAGTTTTTAATTTGTTCATATGCAATTTTTTTAATATATATTACCAAAAAATGACGGGTTTTCTTAACGTAACTACAGGGTGGACATGGATATGTAAGAAACGTCATATACATCTACCGTCCCGATTGTGACTTGCTTATCAAAATCTAA

mRNA sequence

ATGGTTTTACCGACATTATTTTTTCAAAACTGCACTGAGCTCCGACTACGAGAAACTAAGCACATCAATAGTGTCAAAAATCATATCTCCATAAACGCTTGCAATGATGCCATTATCTCAGACGTTCACATCATTGCTCCCGAAAACATCCCTAACACATACGGATTCAACGTTTCTAGATCAAACAATGTTGTTATTCAAAACTCCTTAATCGAAACAGGTGACGAATGTATTTCTCTATACAATGGATCTTTTAATATCAATATCGTCGGTGTTACTTGTGGACCTGGTTACGGTATAAGCATTAGAAGCTTAGGAGAAGATGGAGGATATAACGTAATTGAAAACATCAATGTAAGCAATTGCACCTTAAAGGGCACTCAAAATGGATTGAGAATCAAGACTTCACAGGGTGGACATGGATATGTAAGAAACGTCATATACATCTACCGTCCCGATTGTGACTTGCTTATCAAAATCTAA

Coding sequence (CDS)

ATGGTTTTACCGACATTATTTTTTCAAAACTGCACTGAGCTCCGACTACGAGAAACTAAGCACATCAATAGTGTCAAAAATCATATCTCCATAAACGCTTGCAATGATGCCATTATCTCAGACGTTCACATCATTGCTCCCGAAAACATCCCTAACACATACGGATTCAACGTTTCTAGATCAAACAATGTTGTTATTCAAAACTCCTTAATCGAAACAGGTGACGAATGTATTTCTCTATACAATGGATCTTTTAATATCAATATCGTCGGTGTTACTTGTGGACCTGGTTACGGTATAAGCATTAGAAGCTTAGGAGAAGATGGAGGATATAACGTAATTGAAAACATCAATGTAAGCAATTGCACCTTAAAGGGCACTCAAAATGGATTGAGAATCAAGACTTCACAGGGTGGACATGGATATGTAAGAAACGTCATATACATCTACCGTCCCGATTGTGACTTGCTTATCAAAATCTAA
Homology
[Close]
BLAST of CmoCh16G003380 vs. Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-35
Identity = 73/143 (51.05%), Postives = 98/143 (68.53%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F++C  LRL    H++S   HI I+ CN   IS + I APE+ PNT G +V  S+NVV
Sbjct: 141 LKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVV 200

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           IQ+ +I TGD+CI++ +G+ NI+I G+ CGPG+GISI SLG+DG    +EN+ V NC  +
Sbjct: 201 IQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFR 260

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
           GT NG RIKT QGG GY R + +
Sbjct: 261 GTMNGARIKTWQGGSGYARMITF 283

[Close]
BLAST of CmoCh16G003380 vs. Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-30
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 1 

Query: 8   FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQ 67
           F  C  LR+   +  N+ + H++   C +    ++ + +P + PNT G +VS + N++IQ
Sbjct: 198 FVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQ 257

Query: 68  NSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLKGT 127
           +S++ TGD+CIS+ +GS N+   G+TCGPG+GISI SLGED     + N+ V+  TL GT
Sbjct: 258 DSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGT 317

Query: 128 QNGLRIKTSQGGHGYVRNVIY 149
            NG+RIKT QGGHG  +N+I+
Sbjct: 318 TNGVRIKTWQGGHGMAKNIIF 338

[Close]
BLAST of CmoCh16G003380 vs. Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-27
Identity = 60/143 (41.96%), Postives = 89/143 (62.24%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F N   L ++  K  N+ +  ISI  C++  +S+V + AP + PNT G +++ + N+ 
Sbjct: 195 LTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIR 254

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           +  S+I TGD+CIS+ +GS N+ I  +TCGPG+GISI SLG+D     +  + V    L 
Sbjct: 255 VSESIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLS 314

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
           GT NG+RIKT QGG G   N+I+
Sbjct: 315 GTDNGVRIKTYQGGSGTASNIIF 337

[Close]
BLAST of CmoCh16G003380 vs. Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F  C  +R+     I+S + HI++ +C    IS + +IAP   PNT G ++S S  +V
Sbjct: 180 LTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIV 239

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I N+ + TGD+CIS+   S  I+I  + CGPG+GISI SLG+   +  + +I V    + 
Sbjct: 240 IDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIIS 299

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            T NG+RIKT QGG G V  +I+
Sbjct: 300 DTANGVRIKTWQGGSGLVSKIIF 322

[Close]
BLAST of CmoCh16G003380 vs. Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = 1 

Query: 8   FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQ 67
           F  C  L ++     ++ + H+    C +   S + + APE+ PNT G +V+ + N+ I 
Sbjct: 225 FNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITIS 284

Query: 68  NSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLKGT 127
           +S+I TGD+CIS+ +GS  +    +TCGPG+GISI SLGEDG  + +  + V+   L GT
Sbjct: 285 SSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGT 344

Query: 128 QNGLRIKTSQGGHGYVRNVIY 149
            NGLRIKT +GG G   N+++
Sbjct: 345 SNGLRIKTWKGGSGSATNIVF 365

[Close]
BLAST of CmoCh16G003380 vs. TrEMBL
Match: A0A0A0KZ95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025750 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.7e-46
Identity = 86/143 (60.14%), Postives = 114/143 (79.72%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           LFF NC  L+++  KHINS KNHISIN C+D I S +HI APE+ PNT G ++S S N+ 
Sbjct: 146 LFFHNCNGLQMKGMKHINSAKNHISINMCHDVIFSHLHISAPEDSPNTDGIDISESTNIF 205

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I++S + TGD+CI++ NGS NINI G+TCGPG+GISI SLG+DG YNV+EN++VSNC L+
Sbjct: 206 IEDSFMATGDDCIAINNGSSNININGITCGPGHGISIGSLGKDGEYNVVENVHVSNCLLR 265

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            TQNG+RIKT +GG+GY +N+ +
Sbjct: 266 STQNGIRIKTWEGGYGYAKNITF 288

[Close]
BLAST of CmoCh16G003380 vs. TrEMBL
Match: V4STK3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027137mg PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-38
Identity = 78/143 (54.55%), Postives = 102/143 (71.33%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F+ CT  ++   KHINS KNHIS++ C DA +S++HI APE+ PNT G ++S S N+ 
Sbjct: 146 LVFEKCTSFQVSGLKHINSQKNHISLDNCQDATLSNLHISAPESSPNTDGIDISASQNIH 205

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I NS I TGD+CI++  GS  IN+ G+TCGPG+GISI SLG+ G    +E ++V NCTL 
Sbjct: 206 ILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLN 265

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            TQNGLRIKT QGG GY R + +
Sbjct: 266 ATQNGLRIKTWQGGSGYARKITF 288

[Close]
BLAST of CmoCh16G003380 vs. TrEMBL
Match: M5VXA9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018519mg PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-38
Identity = 78/143 (54.55%), Postives = 103/143 (72.03%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           + F  C  L+LR  KH++S K HI+IN CN+  +S++HIIAPE+ PNT G ++S S  V 
Sbjct: 154 IHFYKCDYLQLRGLKHLDSPKAHITINNCNNVSVSNLHIIAPEDSPNTDGIDISMSTFVN 213

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I+NS I TGD+CI+L NGS +INI  + CGPG+GIS+ SLGEDG Y   E ++V NCT  
Sbjct: 214 IRNSTIGTGDDCIALNNGSSHINITSIVCGPGHGISVGSLGEDGAYETAEEVHVRNCTFN 273

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
           GT+NG RIKT QGG GYV+ + +
Sbjct: 274 GTKNGARIKTWQGGSGYVKGISF 296

[Close]
BLAST of CmoCh16G003380 vs. TrEMBL
Match: A0A151R311_CAJCA (Putative polygalacturonase At3g15720 family OS=Cajanus cajan GN=KK1_041890 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.3e-38
Identity = 78/143 (54.55%), Postives = 104/143 (72.73%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F+ C  L L+   HINS KNHISIN CN ++IS +HIIAP+  PNT G ++SRS+N+V
Sbjct: 135 LHFRECNNLILKGLTHINSPKNHISINNCNGSLISKLHIIAPDESPNTDGIDISRSSNIV 194

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           ++NS +ETGD+CI++ +GS  I+I+GV CGPG+GISI SLG++G +  +E I V NCT  
Sbjct: 195 VKNSKMETGDDCIAINHGSNFISIIGVFCGPGHGISIGSLGKNGAHQTVEEIYVRNCTFN 254

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            T NG RIKT  GG GY R + +
Sbjct: 255 RTTNGARIKTWIGGQGYARKITF 277

[Close]
BLAST of CmoCh16G003380 vs. TrEMBL
Match: A0A067JZL5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19407 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-37
Identity = 74/143 (51.75%), Postives = 104/143 (72.73%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F NC  L+L   KH+NS +NHISIN C+D  +  ++I AP++ PNT G ++S S ++ 
Sbjct: 146 LSFHNCNGLQLSGLKHLNSQRNHISINGCSDVNLFHLYITAPQDSPNTDGIDISASTHIN 205

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I+NS+I TGD+CI++   S  INI G++CGPG+GIS+ SLG++G Y  +E ++V NCT K
Sbjct: 206 IRNSVIRTGDDCIAINGFSSYINISGISCGPGHGISVGSLGKNGAYETVEEVHVQNCTFK 265

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
           GTQNG+RIKT QGG GY R + +
Sbjct: 266 GTQNGVRIKTWQGGAGYARKITF 288

[Close]
BLAST of CmoCh16G003380 vs. TAIR10
Match: AT4G32380.1 (AT4G32380.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-37
Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 1 

Query: 8   FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQ 67
           F  C  +       INS +NHI+I   N+A +S++H+IAP + PNT G ++S S N+ I 
Sbjct: 52  FFGCQNILYNGLTQINSPRNHITILDSNNATLSNLHLIAPASSPNTDGIDISHSQNINIM 111

Query: 68  NSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLKGT 127
           +S I+TGD+C+++   S+NIN+  VTCGPG+GISI SLGE G   V++N+NV +CT  GT
Sbjct: 112 SSTIKTGDDCVAIKRNSYNINVTYVTCGPGHGISIGSLGEGGASEVVQNVNVRHCTFTGT 171

Query: 128 QNGLRIKTSQGGHGYVRNVIY 149
           QNG RIKT  GG G+V+N++Y
Sbjct: 172 QNGARIKTWPGGQGFVKNILY 192

[Close]
BLAST of CmoCh16G003380 vs. TAIR10
Match: AT3G15720.1 (AT3G15720.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 73/143 (51.05%), Postives = 98/143 (68.53%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F++C  LRL    H++S   HI I+ CN   IS + I APE+ PNT G +V  S+NVV
Sbjct: 141 LKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVV 200

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           IQ+ +I TGD+CI++ +G+ NI+I G+ CGPG+GISI SLG+DG    +EN+ V NC  +
Sbjct: 201 IQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFR 260

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
           GT NG RIKT QGG GY R + +
Sbjct: 261 GTMNGARIKTWQGGSGYARMITF 283

[Close]
BLAST of CmoCh16G003380 vs. TAIR10
Match: AT5G44830.1 (AT5G44830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 148.3 bits (373), Expect = 4.1e-36
Identity = 66/143 (46.15%), Postives = 99/143 (69.23%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L FQ C +L++      NS +NHISI+ C    ++ + ++APE+ PNT G N+S S++V 
Sbjct: 88  LHFQRCNDLKIIGITSFNSPRNHISISECKRVQLTKIKLVAPEDSPNTDGINISGSSDVD 147

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           + ++ I TGD+C+++ NGS NINI  + CGPG+GIS+ SLG DG  +++EN+ V+NCT  
Sbjct: 148 VYDTFIGTGDDCVAINNGSVNINITRMNCGPGHGISVGSLGRDGEESIVENVQVTNCTFF 207

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            T NG+RIKT   G GY RN+++
Sbjct: 208 RTDNGVRIKTWPNGKGYARNILF 230

[Close]
BLAST of CmoCh16G003380 vs. TAIR10
Match: AT5G44840.1 (AT5G44840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 4.5e-35
Identity = 65/143 (45.45%), Postives = 97/143 (67.83%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L FQ C +L +      NS KNHISI+ C    I+ + ++AP + PNT G N+S S++V 
Sbjct: 137 LHFQRCNDLMITGITSFNSPKNHISISECKRVKITKIKLVAPHDSPNTDGINISESSDVD 196

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I +++I TGD+C+++ +GS NINI  + CGPG+GIS+ S+G DG  +++EN+ V+NCT  
Sbjct: 197 IYDTVIGTGDDCVAINSGSMNINIARMNCGPGHGISVGSVGRDGEESIVENVQVTNCTFI 256

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            T NG RIKT   G GY +N+++
Sbjct: 257 RTDNGARIKTWPNGKGYAKNILF 279

[Close]
BLAST of CmoCh16G003380 vs. TAIR10
Match: AT4G35670.1 (AT4G35670.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 7.7e-35
Identity = 68/143 (47.55%), Postives = 93/143 (65.03%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L    C  LR+     I+S KNHISI  CN   IS++++ APE  PNT G ++S S N+ 
Sbjct: 147 LHISKCDNLRINGITSIDSPKNHISIKTCNTVAISNINLFAPETSPNTDGIDISDSTNIN 206

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I +S I+TGD+CI++ +GS NINI G+ CGPG+GIS+ SLG  G    + ++ V++CT  
Sbjct: 207 IFDSTIQTGDDCIAINSGSSNINITGINCGPGHGISVGSLGAGGAEAKVSDVQVTHCTFN 266

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            T NG RIKT  GG GY RN+ +
Sbjct: 267 QTTNGARIKTWLGGQGYARNISF 289

[Close]
BLAST of CmoCh16G003380 vs. NCBI nr
Match: gi|778697492|ref|XP_011654334.1| (PREDICTED: probable polygalacturonase At3g15720 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 5.3e-46
Identity = 86/143 (60.14%), Postives = 114/143 (79.72%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           LFF NC  L+++  KHINS KNHISIN C+D I S +HI APE+ PNT G ++S S N+ 
Sbjct: 146 LFFHNCNGLQMKGMKHINSAKNHISINMCHDVIFSHLHISAPEDSPNTDGIDISESTNIF 205

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I++S + TGD+CI++ NGS NINI G+TCGPG+GISI SLG+DG YNV+EN++VSNC L+
Sbjct: 206 IEDSFMATGDDCIAINNGSSNININGITCGPGHGISIGSLGKDGEYNVVENVHVSNCLLR 265

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            TQNG+RIKT +GG+GY +N+ +
Sbjct: 266 STQNGIRIKTWEGGYGYAKNITF 288

[Close]
BLAST of CmoCh16G003380 vs. NCBI nr
Match: gi|659108957|ref|XP_008454473.1| (PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 7.0e-46
Identity = 86/143 (60.14%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           LFF NC  L++   KH+NS KNHISIN CND I S +HI APE+ PNT G ++S+S N+ 
Sbjct: 139 LFFHNCNGLQMNGMKHVNSAKNHISINLCNDVIFSHLHISAPEDSPNTDGIDISQSTNIF 198

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           IQ+S I TGD+C+++ NGS NINI  +TCGPG+GISI SLG+DG YNV+EN++VSNC L+
Sbjct: 199 IQDSFIGTGDDCVAINNGSSNININTITCGPGHGISIGSLGKDGEYNVVENVHVSNCLLR 258

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
            TQNG+RIKT +GG+GY +N+ +
Sbjct: 259 NTQNGIRIKTWEGGYGYAKNITF 281

[Close]
BLAST of CmoCh16G003380 vs. NCBI nr
Match: gi|1009123377|ref|XP_015878509.1| (PREDICTED: probable polygalacturonase At3g15720 [Ziziphus jujuba])

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-39
Identity = 79/152 (51.97%), Postives = 107/152 (70.39%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F  C  L L +  H++S KNHIS+ +CN+  I ++H+ AP+  PNT G ++S S ++ 
Sbjct: 114 LHFNQCHGLHLSDLSHLDSPKNHISLKSCNNVHIVNLHVTAPKESPNTDGIDISESADIH 173

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I +S++ TGD+CI + NGS  INI G+TCGPG+GIS+ SLG +G YN +EN+ V NCT K
Sbjct: 174 IDDSVMATGDDCIGINNGSSYINIKGITCGPGHGISVGSLGGNGAYNTVENVYVFNCTFK 233

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY--IYRPDCD 156
           GTQNG RIKTSQGG GY RN+ +  I   DC+
Sbjct: 234 GTQNGARIKTSQGGSGYARNITFEKIIVEDCE 265

[Close]
BLAST of CmoCh16G003380 vs. NCBI nr
Match: gi|502092038|ref|XP_004489698.1| (PREDICTED: probable polygalacturonase At3g15720 [Cicer arietinum])

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 79/143 (55.24%), Postives = 103/143 (72.03%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           L F  C  L LR   HINS +NHIS+NAC+ + IS +HIIAP   PNT G +++ S+NV+
Sbjct: 157 LHFHACENLILRGLTHINSPRNHISLNACHGSHISKLHIIAPNESPNTDGIDIAESSNVI 216

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I+NS +ETGD+CI++ +GS +INI+G+ CGPG+GIS+ SLG +G    +ENI V NCT  
Sbjct: 217 IENSKMETGDDCIAINHGSSSINIIGIFCGPGHGISVGSLGRNGADESVENIYVRNCTFN 276

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
           GT NG RIKT  GGHGY R V +
Sbjct: 277 GTTNGARIKTWMGGHGYARKVTF 299

[Close]
BLAST of CmoCh16G003380 vs. NCBI nr
Match: gi|645271605|ref|XP_008240992.1| (PREDICTED: LOW QUALITY PROTEIN: probable polygalacturonase At3g15720 [Prunus mume])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 78/143 (54.55%), Postives = 103/143 (72.03%), Query Frame = 1 

Query: 6   LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVV 65
           + F  C  L+LR  KH++S K HI+IN CN+  +S++HIIAPE+ PNT G ++S S  V 
Sbjct: 146 IHFYKCDYLQLRGLKHLDSPKAHITINNCNNVSVSNLHIIAPEDSPNTDGIDISMSTFVN 205

Query: 66  IQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGGYNVIENINVSNCTLK 125
           I NS I TGD+CI+L NGS +INI  + CGPG+GIS+ SLGEDG Y  +E ++V NCT  
Sbjct: 206 IHNSTIGTGDDCIALNNGSSHINITSIVCGPGHGISVGSLGEDGAYETVEEVHVRNCTFN 265

Query: 126 GTQNGLRIKTSQGGHGYVRNVIY 149
           GT+NG RIKT QGG GYV+ + +
Sbjct: 266 GTKNGARIKTWQGGSGYVKGISF 288

The following BLAST results are available for this feature:
BLAST of CmoCh16G003380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR3_ARATH2.5e-3551.05Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 S... [more]
QRT2_ARATH1.8e-3043.26Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2[more]
ADPG2_ARATH3.3e-2741.96Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2[more]
PGLR5_ARATH1.6e-2640.56Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 S... [more]
PGLR_MALDO1.8e-2539.72Polygalacturonase OS=Malus domestica PE=2 SV=1[more]
BLAST of CmoCh16G003380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ95_CUCSA3.7e-4660.14Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025750 PE=3 SV=1[more]
V4STK3_9ROSI2.9e-3854.55Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027137mg PE=3 SV=1[more]
M5VXA9_PRUPE3.7e-3854.55Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018519mg PE=3 SV=1[more]
A0A151R311_CAJCA8.3e-3854.55Putative polygalacturonase At3g15720 family OS=Cajanus cajan GN=KK1_041890 PE=3 ... [more]
A0A067JZL5_JATCU3.2e-3751.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19407 PE=3 SV=1[more]
BLAST of CmoCh16G003380 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32380.11.7e-3749.65 Pectin lyase-like superfamily protein[more]
AT3G15720.11.4e-3651.05 Pectin lyase-like superfamily protein[more]
AT5G44830.14.1e-3646.15 Pectin lyase-like superfamily protein[more]
AT5G44840.14.5e-3545.45 Pectin lyase-like superfamily protein[more]
AT4G35670.17.7e-3547.55 Pectin lyase-like superfamily protein[more]
BLAST of CmoCh16G003380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697492|ref|XP_011654334.1|5.3e-4660.14PREDICTED: probable polygalacturonase At3g15720 [Cucumis sativus][more]
gi|659108957|ref|XP_008454473.1|7.0e-4660.14PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo][more]
gi|1009123377|ref|XP_015878509.1|4.8e-3951.97PREDICTED: probable polygalacturonase At3g15720 [Ziziphus jujuba][more]
gi|502092038|ref|XP_004489698.1|1.4e-3855.24PREDICTED: probable polygalacturonase At3g15720 [Cicer arietinum][more]
gi|645271605|ref|XP_008240992.1|2.4e-3854.55PREDICTED: LOW QUALITY PROTEIN: probable polygalacturonase At3g15720 [Prunus mum... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR006626PbH1
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003380.1CmoCh16G003380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 6..148
score: 6.2
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 84..104
score: 6900.0coord: 34..60
score: 1100.0coord: 114..135
score: 39.0coord: 61..82
score: 2
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 6..148
score: 9.1
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 6..148
score: 6.6
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 6..148
score: 1.3
NoneNo IPR availablePANTHERPTHR31375:SF42SUBFAMILY NOT NAMEDcoord: 6..148
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G003380CmaCh16G003200Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G003380Lsi03G010210Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G003380Cp4.1LG14g04560Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G003380Cla97C10G193300Watermelon (97103) v2cmowmbB316
CmoCh16G003380Carg19686Silver-seed gourdcarcmoB0402
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G003380Cucumber (Gy14) v2cgybcmoB732
CmoCh16G003380Melon (DHL92) v3.6.1cmomedB349
CmoCh16G003380Melon (DHL92) v3.6.1cmomedB317
CmoCh16G003380Melon (DHL92) v3.6.1cmomedB341
CmoCh16G003380Melon (DHL92) v3.6.1cmomedB342
CmoCh16G003380Silver-seed gourdcarcmoB0258
CmoCh16G003380Silver-seed gourdcarcmoB0509
CmoCh16G003380Cucumber (Chinese Long) v3cmocucB0369
CmoCh16G003380Cucumber (Chinese Long) v3cmocucB0385
CmoCh16G003380Cucumber (Chinese Long) v3cmocucB0391
CmoCh16G003380Cucumber (Chinese Long) v3cmocucB0408
CmoCh16G003380Cucumber (Chinese Long) v3cmocucB0409
CmoCh16G003380Watermelon (97103) v2cmowmbB333
CmoCh16G003380Wax gourdcmowgoB0405
CmoCh16G003380Wax gourdcmowgoB0444
CmoCh16G003380Cucurbita moschata (Rifu)cmocmoB010
CmoCh16G003380Cucurbita moschata (Rifu)cmocmoB096
CmoCh16G003380Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G003380Cucurbita moschata (Rifu)cmocmoB296
CmoCh16G003380Cucumber (Gy14) v1cgycmoB0190
CmoCh16G003380Cucumber (Gy14) v1cgycmoB0219
CmoCh16G003380Cucumber (Gy14) v1cgycmoB0625
CmoCh16G003380Cucumber (Gy14) v1cgycmoB0964
CmoCh16G003380Cucurbita maxima (Rimu)cmacmoB133
CmoCh16G003380Cucurbita maxima (Rimu)cmacmoB502
CmoCh16G003380Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G003380Wild cucumber (PI 183967)cmocpiB329
CmoCh16G003380Wild cucumber (PI 183967)cmocpiB336
CmoCh16G003380Wild cucumber (PI 183967)cmocpiB344
CmoCh16G003380Cucumber (Chinese Long) v2cmocuB322
CmoCh16G003380Cucumber (Chinese Long) v2cmocuB328
CmoCh16G003380Cucumber (Chinese Long) v2cmocuB337
CmoCh16G003380Cucumber (Chinese Long) v2cmocuB338
CmoCh16G003380Melon (DHL92) v3.5.1cmomeB304
CmoCh16G003380Melon (DHL92) v3.5.1cmomeB280
CmoCh16G003380Melon (DHL92) v3.5.1cmomeB298
CmoCh16G003380Watermelon (Charleston Gray)cmowcgB273
CmoCh16G003380Watermelon (97103) v1cmowmB287
CmoCh16G003380Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G003380Cucurbita pepo (Zucchini)cmocpeB321
CmoCh16G003380Bottle gourd (USVL1VR-Ls)cmolsiB291
CmoCh16G003380Bottle gourd (USVL1VR-Ls)cmolsiB298
CmoCh16G003380Cucumber (Gy14) v2cgybcmoB465
CmoCh16G003380Cucumber (Gy14) v2cgybcmoB471