CmoCh16G002930 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002930
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1334654 .. 1335025 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATCGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGACGGTAACGGAGGCAAGGCTGCTCCGGCCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGGGCTTAGAGAGCGATGGAATACTCGATCCGGTTGTTGGGTTTGGCAATATGGGCGATGCAGGAAGAGGGGGTAGCGCAGATGGGTTAGGAAGCGATGGCATTGGTGGTAGAGTTGGGAGCGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACTAGCGTAG

mRNA sequence

ATGAAAACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATCGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGACGGTAACGGAGGCAAGGCTGCTCCGGCCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGGGCTTAGAGAGCGATGGAATACTCGATCCGGTTGTTGGGTTTGGCAATATGGGCGATGCAGGAAGAGGGGGTAGCGCAGATGGGTTAGGAAGCGATGGCATTGGTGGTAGAGTTGGGAGCGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACTAGCGTAG

Coding sequence (CDS)

ATGAAAACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATCGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGACGGTAACGGAGGCAAGGCTGCTCCGGCCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGGGCTTAGAGAGCGATGGAATACTCGATCCGGTTGTTGGGTTTGGCAATATGGGCGATGCAGGAAGAGGGGGTAGCGCAGATGGGTTAGGAAGCGATGGCATTGGTGGTAGAGTTGGGAGCGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACTAGCGTAG
Homology
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BLAST of CmoCh16G002930 vs. NCBI nr
Match: gi|659125953|ref|XP_008462936.1| (PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 57/118 (48.31%), Postives = 70/118 (59.32%), Query Frame = 1 

Query: 9   NYSI-----PAQGEEVAGGG-KNGSDGSVVGIDGRDGKVGSEDDGNGGKAAPAGMFIGEL 68
           NY+I     P   EEVAGGG KNG +G+ VG+ G DGK G    G+GG A+P GMF GEL
Sbjct: 2   NYNIKPLTTPPGEEEVAGGGDKNGMEGNEVGMVGIDGKFGRAMFGSGGNASPLGMFTGEL 61

Query: 69  GSGGSVGLESDGILDPVVGFGNMGDAGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVA 121
           GSGG + L +       VG G  G  G   + +G    GI GR G++GGAVC+R R A
Sbjct: 62  GSGGRLTLGN-------VGCGKFGRVGFDKAGNGGIPVGITGRFGTKGGAVCKRWRAA 112

The following BLAST results are available for this feature:
BLAST of CmoCh16G002930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002930 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125953|ref|XP_008462936.1|3.1e-0948.31PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002930.1CmoCh16G002930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002930CmaCh16G002740Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002930Lsi03G009710Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G002930Cla97C10G192670Watermelon (97103) v2cmowmbB316
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002930Melon (DHL92) v3.6.1cmomedB317
CmoCh16G002930Melon (DHL92) v3.6.1cmomedB339
CmoCh16G002930Melon (DHL92) v3.6.1cmomedB342
CmoCh16G002930Silver-seed gourdcarcmoB0402
CmoCh16G002930Silver-seed gourdcarcmoB0509
CmoCh16G002930Cucumber (Chinese Long) v3cmocucB0390
CmoCh16G002930Wax gourdcmowgoB0405
CmoCh16G002930Cucurbita moschata (Rifu)cmocmoB096
CmoCh16G002930Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002930Cucumber (Gy14) v1cgycmoB0908
CmoCh16G002930Cucurbita maxima (Rimu)cmacmoB133
CmoCh16G002930Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002930Wild cucumber (PI 183967)cmocpiB334
CmoCh16G002930Cucumber (Chinese Long) v2cmocuB327
CmoCh16G002930Watermelon (Charleston Gray)cmowcgB273
CmoCh16G002930Watermelon (97103) v1cmowmB287
CmoCh16G002930Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002930Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002930Cucurbita pepo (Zucchini)cmocpeB321