CmaCh16G002740 (gene) Cucurbita maxima (Rimu)

NameCmaCh16G002740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 1278335 .. 1278751 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATGGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGTCGGTAATGGAGGCAAGGCTGCTCCGGTCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGAGCTTAGGGAGCGATGGAGTACTCGGTCCAGTTGTTGGGTTTGGCAATATGGGCAATGCAGGTAGAGGGGGTAGCGCAGATGGGTTAGGAAGCGATGGCATTGGTGGTAGAGTTGGGAGTGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACCAAGGTCCACGCTTGAAAATGCCAAAGCGACCATGATGGCTAAGGTCAAGTAG

mRNA sequence

ATGAAGACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATGGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGTCGGTAATGGAGGCAAGGCTGCTCCGGTCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGAGCTTAGGGAGCGATGGAGTACTCGGTCCAGTTGTTGGGTTTGGCAATATGGGCAATGCAGGTAGAGGGGGTAGCGCAGATGGGTTAGGAAGCGATGGCATTGGTGGTAGAGTTGGGAGTGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACCAAGGTCCACGCTTGAAAATGCCAAAGCGACCATGATGGCTAAGGTCAAGTAG

Coding sequence (CDS)

ATGAAGACAATAGGAAAGAACAACAACTATTCTATACCAGCTCAAGGGGAAGAAGTTGCAGGTGGAGGAAAGAACGGGAGCGACGGAAGTGTAGTCGGGATGGATGGAAGGGATGGCAAGGTTGGAAGCGAAGATGTCGGTAATGGAGGCAAGGCTGCTCCGGTCGGGATGTTCATCGGGGAGCTTGGAAGTGGAGGAAGTGTGAGCTTAGGGAGCGATGGAGTACTCGGTCCAGTTGTTGGGTTTGGCAATATGGGCAATGCAGGTAGAGGGGGTAGCGCAGATGGGTTAGGAAGCGATGGCATTGGTGGTAGAGTTGGGAGTGAAGGCGGAGCAGTCTGCAGAAGATGTCGAGTGGCTCGACCAAGGTCCACGCTTGAAAATGCCAAAGCGACCATGATGGCTAAGGTCAAGTAG

Protein sequence

MKTIGKNNNYSIPAQGEEVAGGGKNGSDGSVVGMDGRDGKVGSEDVGNGGKAAPVGMFIGELGSGGSVSLGSDGVLGPVVGFGNMGNAGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARPRSTLENAKATMMAKVK
BLAST of CmaCh16G002740 vs. TrEMBL
Match: A0A0A0L0M4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374620 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 1

Query: 28  DGSVVGMDGRDGKVGSEDVGNGGKAAPVGMFIGELGSGGSVSLGSDGVLGPVVGFGNMGN 87
           +G+ +GM G DGK GS  VG+GG A+P+G       SGG +  G+       VG GN G 
Sbjct: 2   EGNEIGMVGIDGKFGSVIVGSGGNASPIG-------SGGKLIFGN-------VGCGNFGR 61

Query: 88  AGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARPRSTLENAKATMMAKVK 139
            G G   +G    GI GR G++GG VC R R A P+  LE AK  + A +K
Sbjct: 62  VGFGKPGNGGIRVGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIK 98

BLAST of CmaCh16G002740 vs. NCBI nr
Match: gi|659125953|ref|XP_008462936.1| (PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 67/136 (49.26%), Postives = 83/136 (61.03%), Query Frame = 1

Query: 9   NYSI-----PAQGEEVAGGG-KNGSDGSVVGMDGRDGKVGSEDVGNGGKAAPVGMFIGEL 68
           NY+I     P   EEVAGGG KNG +G+ VGM G DGK G    G+GG A+P+GMF GEL
Sbjct: 2   NYNIKPLTTPPGEEEVAGGGDKNGMEGNEVGMVGIDGKFGRAMFGSGGNASPLGMFTGEL 61

Query: 69  GSGGSVSLGSDGVLGPVVGFGNMGNAGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARP 128
           GSGG ++LG+       VG G  G  G   + +G    GI GR G++GGAVC+R R A P
Sbjct: 62  GSGGRLTLGN-------VGCGKFGRVGFDKAGNGGIPVGITGRFGTKGGAVCKRWRAAWP 121

Query: 129 RSTLENAKATMMAKVK 139
            S LE AK  + A +K
Sbjct: 122 TSMLERAKVAIKAMIK 130

BLAST of CmaCh16G002740 vs. NCBI nr
Match: gi|731384700|ref|XP_010648231.1| (PREDICTED: glycine, alanine and asparagine-rich protein-like [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 8.5e-08
Identity = 64/149 (42.95%), Postives = 82/149 (55.03%), Query Frame = 1

Query: 11  SIPAQGEEVAGGG-KNGSDGSVVGMDGRDGKVGSEDVGNGGKAA-PVGMFIGELGSGGSV 70
           ++ +QG  VAGGG +NG +G VVG+ G +G VG   VG GG  +  +    G LGSGGSV
Sbjct: 22  TVSSQGLVVAGGGERNGIEGIVVGIVGIEGMVGKV-VGRGGNVSFGIEGMAGMLGSGGSV 81

Query: 71  SLGSDGVLG-------------PVVGFGNMGNAGRGGSADGLGSD------GIGGRVGSE 130
           +LG DG +G              +V  G+ G  GR GS +G G +      GI G VG+E
Sbjct: 82  ALGKDGNVGCGIVGRDGKGGNVGLVRVGSEGTVGRVGSDEGKGGNVGFGRLGITGVVGTE 141

Query: 131 GGAVCRRCRVARPRSTLENAKATMMAKVK 139
           GGAV +R R AR  S LEN   T   K+K
Sbjct: 142 GGAVSKRRRAARLTSMLENDNRTKRDKIK 169

BLAST of CmaCh16G002740 vs. NCBI nr
Match: gi|700199436|gb|KGN54594.1| (hypothetical protein Csa_4G374620 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 1

Query: 28  DGSVVGMDGRDGKVGSEDVGNGGKAAPVGMFIGELGSGGSVSLGSDGVLGPVVGFGNMGN 87
           +G+ +GM G DGK GS  VG+GG A+P+G       SGG +  G+       VG GN G 
Sbjct: 2   EGNEIGMVGIDGKFGSVIVGSGGNASPIG-------SGGKLIFGN-------VGCGNFGR 61

Query: 88  AGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARPRSTLENAKATMMAKVK 139
            G G   +G    GI GR G++GG VC R R A P+  LE AK  + A +K
Sbjct: 62  VGFGKPGNGGIRVGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIK 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0M4_CUCSA2.5e-0642.34Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659125953|ref|XP_008462936.1|4.2e-1549.26PREDICTED: uncharacterized protein LOC103501198 [Cucumis melo][more]
gi|731384700|ref|XP_010648231.1|8.5e-0842.95PREDICTED: glycine, alanine and asparagine-rich protein-like [Vitis vinifera][more]
gi|700199436|gb|KGN54594.1|3.6e-0642.34hypothetical protein Csa_4G374620 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002740.1CmaCh16G002740.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 130..138
scor

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G002740CmoCh16G002930Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G002740Cla97C10G192670Watermelon (97103) v2cmawmbB332
The following gene(s) are paralogous to this gene:

None