CmoCh16G000360 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAATACAATTATATATAAGCATCGACATTATATGTTGGCCATTTTCTTTCAGTTGATTTCACTGGACGAAGATCCTAAAGATGGCTGCTTTCGCCCCGCTGCCGTTAACTTCGCCTTCTTTACATCCTGTTGTCCAATTCTCACCTCTTGTGTTCTCCTCAAAAGTTCTATATGACCCAAGTTCCCATTGCCTCACCGTCGGATCAATAAGACCTGCAAGGCAAAAATTCACCTCTCAAACTAACCCGAGGAGCCTGATAATCCTTGGTGCAGCAACAAAACGAGCAAAAACACCAGGTATTCTCTTCTAGTTGAATATTTAATCAGACTGTGTTCTTTTTCCAGGTAATATGGTAGAAATTTCAATCTTTTTAGTTTTAATTCACTAGCATAAAAGTGGGTTTATTCTCGTCTATCTGGAGGATTCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTGCAGAAAAGGGTTCGACTCTCTATCTACCACTTGAGTGAATATTGGATGAGTGTTCGGTTTCATTAATCTAAAACTACATGGAAACACATTACACTTGTTTTCGTCACAACATCCAAGGTTTGGTTATAACAAAGCTTGAAATTTTATGAACATGAGAATTAAGATCTTTACTGCAGGTTAGGAGTGTGGATGCGAATGAAGCTCTGCGCCTTCAGAAGGAAAATAACTTCGTGATTCTTGATGTGAGGCCAGAAGCAGAATTCAAAGAGGTTATTAGAGTATTTTTTTTTCCTTTAAGTCTATAACAACCAATGAAATGTTACATCTTATGTCCACTTTTTGGTGTAGGGCCATCCACCAGGGGCCATTAATGTGCAAATTTACAGGCTTATAAAGGAGTGGACAGCATGGGACATAGCCAGGCGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACAGAAGAAAACCCAGAATTCTTGCAAAGTAAGTTGCTTATGAACCCCTTCCTCACTTGACGCCTTGTTCTGAAGTGATATGGAGAAGTGAATGACAGAGTGTATTCTACAGGTGTAGAATCTAAAATAGCTAAAGATGCGAAAATAATAGTAGCATGCTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTACTTGAGCTCTTGACAGCAACTCTTTGAGTTTCTCAACTTTGCAGAGTAATATGCATATTATATGAGCATTACATGTTTTTTATATTTTACAAGTATCACTCATCGTTTGGTTAACACTGTTAAACGGGTAGAACGGTGCAAATAATGATTTGTTCAACGAGTATTAACAAGATGAAGAATCAATAAGATGAATCTGCAGTCCAAAATCGCATGTGCCTTCTGTTTGTTGCCCGAGGATTATTTGCTTTTTCGCTGAAGTTTAAGTTTTGATGCTTTTAACAGGTCATTGATAGCAGCCTACTTGTTGGTTCTCAACGGCTACAACAACGTATTTCACTTAGAAGGTGGTCTCTATAATTGGTTCAAAGAAGGATTGCCTGTAGATTCAGAAGAGTAAGGTGGTCTCTGCAAGATTTTCGGAAGTAAAATAGGTTGTCATTTTTGGTGGGCGCCCATTAGAGAACAGAGCCAAGTGCTGCTCTGGCAAGACTTGCTTGGGTTGTGAGTGTTAACTACGACAGCATCGCCAGGATCCTCCTTTGTAAACGTTCAATTATAAGTTGGACAGAATAGAAGACTAGATTTTGTTTCACTGCGGAAACACCCACTCCCGTTTGATGTTTAGTTTGTAATGAAAAATGTGTATGCATAAGTTTTCGTTGTAATGCTGCAACTAATATGATATTCCAGTTGAGGTATTGAACTCTTAAATCTGTAAATCCGTTCAGCTTATTAAAAGCTAGAAGATTGCATGTCCTATGAATCATACAGTCACCGAAAGTTATCAGTTATCAGGCAGC AGAATACAATTATATATAAGCATCGACATTATATGTTGGCCATTTTCTTTCAGTTGATTTCACTGGACGAAGATCCTAAAGATGGCTGCTTTCGCCCCGCTGCCGTTAACTTCGCCTTCTTTACATCCTGTTGTCCAATTCTCACCTCTTGTGTTCTCCTCAAAAGTTCTATATGACCCAAGTTCCCATTGCCTCACCGTCGGATCAATAAGACCTGCAAGGCAAAAATTCACCTCTCAAACTAACCCGAGGAGCCTGATAATCCTTGGTGCAGCAACAAAACGAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTGCAGAAAAGGGTTAGGAGTGTGGATGCGAATGAAGCTCTGCGCCTTCAGAAGGAAAATAACTTCGTGATTCTTGATGTGAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGGGCCATTAATGTGCAAATTTACAGGCTTATAAAGGAGTGGACAGCATGGGACATAGCCAGGCGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACAGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTAAAATAGCTAAAGATGCGAAAATAATAGTAGCATGCTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCATTGATAGCAGCCTACTTGTTGGTTCTCAACGGCTACAACAACGTATTTCACTTAGAAGGTGGTCTCTATAATTGGTTCAAAGAAGGATTGCCTGTAGATTCAGAAGAGTAAGGTGGTCTCTGCAAGATTTTCGGAAGTAAAATAGGTTGTCATTTTTGGTGGGCGCCCATTAGAGAACAGAGCCAAGTGCTGCTCTGGCAAGACTTGCTTGGGTTGTGAGTGTTAACTACGACAGCATCGCCAGGATCCTCCTTTGTAAACGTTCAATTATAAGTTGGACAGAATAGAAGACTAGATTTTGTTTCACTGCGGAAACACCCACTCCCGTTTGATGTTTAGTTTGTAATGAAAAATGTGTATGCATAAGTTTTCGTTGTAATGCTGCAACTAATATGATATTCCAGTTGAGGTATTGAACTCTTAAATCTGTAAATCCGTTCAGCTTATTAAAAGCTAGAAGATTGCATGTCCTATGAATCATACAGTCACCGAAAGTTATCAGTTATCAGGCAGC ATGGCTGCTTTCGCCCCGCTGCCGTTAACTTCGCCTTCTTTACATCCTGTTGTCCAATTCTCACCTCTTGTGTTCTCCTCAAAAGTTCTATATGACCCAAGTTCCCATTGCCTCACCGTCGGATCAATAAGACCTGCAAGGCAAAAATTCACCTCTCAAACTAACCCGAGGAGCCTGATAATCCTTGGTGCAGCAACAAAACGAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTGCAGAAAAGGGTTAGGAGTGTGGATGCGAATGAAGCTCTGCGCCTTCAGAAGGAAAATAACTTCGTGATTCTTGATGTGAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGGGCCATTAATGTGCAAATTTACAGGCTTATAAAGGAGTGGACAGCATGGGACATAGCCAGGCGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACAGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTAAAATAGCTAAAGATGCGAAAATAATAGTAGCATGCTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCATTGATAGCAGCCTACTTGTTGGTTCTCAACGGCTACAACAACGTATTTCACTTAGAAGGTGGTCTCTATAATTGGTTCAAAGAAGGATTGCCTGTAGATTCAGAAGAGTAA
BLAST of CmoCh16G000360 vs. Swiss-Prot
Match: STR14_ARATH (Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 2.4e-79 Identity = 144/181 (79.56%), Postives = 160/181 (88.40%), Query Frame = 1
BLAST of CmoCh16G000360 vs. Swiss-Prot
Match: STR9_ARATH (Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08 Identity = 49/183 (26.78%), Postives = 82/183 (44.81%), Query Frame = 1
BLAST of CmoCh16G000360 vs. Swiss-Prot
Match: STR11_ARATH (Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07 Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 1
BLAST of CmoCh16G000360 vs. Swiss-Prot
Match: STR18_ARATH (Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.7e-06 Identity = 44/151 (29.14%), Postives = 63/151 (41.72%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TrEMBL
Match: A0A0A0LC69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238120 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 1.5e-120 Identity = 222/237 (93.67%), Postives = 227/237 (95.78%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TrEMBL
Match: B9IDL2_POPTR (Rhodanese-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0015s01040g PE=4 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 8.4e-95 Identity = 177/229 (77.29%), Postives = 194/229 (84.72%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TrEMBL
Match: A0A067EX39_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026264mg PE=4 SV=1) HSP 1 Score: 352.8 bits (904), Expect = 3.2e-94 Identity = 177/225 (78.67%), Postives = 195/225 (86.67%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TrEMBL
Match: V4T2K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021946mg PE=4 SV=1) HSP 1 Score: 352.8 bits (904), Expect = 3.2e-94 Identity = 177/225 (78.67%), Postives = 195/225 (86.67%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TrEMBL
Match: J7FWP1_ROSRU (Rhodanese-like domain-containing protein OS=Rosa rugosa PE=4 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 1.2e-93 Identity = 181/229 (79.04%), Postives = 198/229 (86.46%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TAIR10
Match: AT4G27700.1 (AT4G27700.1 Rhodanese/Cell cycle control phosphatase superfamily protein) HSP 1 Score: 296.6 bits (758), Expect = 1.4e-80 Identity = 144/181 (79.56%), Postives = 160/181 (88.40%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TAIR10
Match: AT2G42220.1 (AT2G42220.1 Rhodanese/Cell cycle control phosphatase superfamily protein) HSP 1 Score: 62.0 bits (149), Expect = 5.7e-10 Identity = 49/183 (26.78%), Postives = 82/183 (44.81%), Query Frame = 1
BLAST of CmoCh16G000360 vs. TAIR10
Match: AT4G24750.1 (AT4G24750.1 Rhodanese/Cell cycle control phosphatase superfamily protein) HSP 1 Score: 58.5 bits (140), Expect = 6.3e-09 Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 1
BLAST of CmoCh16G000360 vs. NCBI nr
Match: gi|449457001|ref|XP_004146237.1| (PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Cucumis sativus]) HSP 1 Score: 440.3 bits (1131), Expect = 2.2e-120 Identity = 222/237 (93.67%), Postives = 227/237 (95.78%), Query Frame = 1
BLAST of CmoCh16G000360 vs. NCBI nr
Match: gi|659111966|ref|XP_008456000.1| (PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Cucumis melo]) HSP 1 Score: 427.9 bits (1099), Expect = 1.1e-116 Identity = 217/237 (91.56%), Postives = 223/237 (94.09%), Query Frame = 1
BLAST of CmoCh16G000360 vs. NCBI nr
Match: gi|224135067|ref|XP_002321975.1| (rhodanese-like domain-containing family protein [Populus trichocarpa]) HSP 1 Score: 354.8 bits (909), Expect = 1.2e-94 Identity = 177/229 (77.29%), Postives = 194/229 (84.72%), Query Frame = 1
BLAST of CmoCh16G000360 vs. NCBI nr
Match: gi|568877237|ref|XP_006491648.1| (PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic isoform X2 [Citrus sinensis]) HSP 1 Score: 352.8 bits (904), Expect = 4.6e-94 Identity = 177/225 (78.67%), Postives = 195/225 (86.67%), Query Frame = 1
BLAST of CmoCh16G000360 vs. NCBI nr
Match: gi|567897390|ref|XP_006441183.1| (hypothetical protein CICLE_v10021946mg [Citrus clementina]) HSP 1 Score: 352.8 bits (904), Expect = 4.6e-94 Identity = 177/225 (78.67%), Postives = 195/225 (86.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |