CmoCh15G008750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G008750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ileal sodium/bile acid cotransporter, putative
Location	Cmo_Chr15 : 4434986 .. 4435474 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCACACCACACCTGTTTAAATATGAATGTCCTTTCTTCCTCGGTCCACACAATCAAGCAAAGATGCTATGAAATCATGTCTTTCTCCACCCCACGAGATTGTTTACCAATTTGGAGGGCAAGGGAACAGAGGCTTGAGCCAGACAAAGGGCATTCCAATGTTGGGAAGGCAATTATTGGGCTTACTTTTCAAGCACTTCTAGCCATGTTCATCAGCTCACCAAGCTCATCTCCTCCACTTTTGAGGGTCCTTTTTGGAGCTACTATGTTCATTAGCTTTTTACTTTCATTTGCTGGTATTTTCCTTCGAAATGCCTTCCCGAAAGCTGCACGTTTGTTCGAAAAGCTCGGAGCGCTTTTTGCCGCAATTGGTGTGTCCATCATTGCAAGCTTTCTTCTTATGCACGAGAACTATGCTTGGATCAGTGGTTTAGCATGTGTCTTCTCCTTGATTGTCTTTGGTCTTTCATACAACTGA

mRNA sequence

ATGGCTTCAACTTCACACCACACCTGTTTAAATATGAATGTCCTTTCTTCCTCGGTCCACACAATCAAGCAAAGATGCTATGAAATCATGTCTTTCTCCACCCCACGAGATTGTTTACCAATTTGGAGGGCAAGGGAACAGAGGCTTGAGCCAGACAAAGGGCATTCCAATGTTGGGAAGGCAATTATTGGGCTTACTTTTCAAGCACTTCTAGCCATGTTCATCAGCTCACCAAGCTCATCTCCTCCACTTTTGAGGGTCCTTTTTGGAGCTACTATGTTCATTAGCTTTTTACTTTCATTTGCTGGTATTTTCCTTCGAAATGCCTTCCCGAAAGCTGCACGTTTGTTCGAAAAGCTCGGAGCGCTTTTTGCCGCAATTGGTGTGTCCATCATTGCAAGCTTTCTTCTTATGCACGAGAACTATGCTTGGATCAGTGGTTTAGCATGTGTCTTCTCCTTGATTGTCTTTGGTCTTTCATACAACTGA

Coding sequence (CDS)

ATGGCTTCAACTTCACACCACACCTGTTTAAATATGAATGTCCTTTCTTCCTCGGTCCACACAATCAAGCAAAGATGCTATGAAATCATGTCTTTCTCCACCCCACGAGATTGTTTACCAATTTGGAGGGCAAGGGAACAGAGGCTTGAGCCAGACAAAGGGCATTCCAATGTTGGGAAGGCAATTATTGGGCTTACTTTTCAAGCACTTCTAGCCATGTTCATCAGCTCACCAAGCTCATCTCCTCCACTTTTGAGGGTCCTTTTTGGAGCTACTATGTTCATTAGCTTTTTACTTTCATTTGCTGGTATTTTCCTTCGAAATGCCTTCCCGAAAGCTGCACGTTTGTTCGAAAAGCTCGGAGCGCTTTTTGCCGCAATTGGTGTGTCCATCATTGCAAGCTTTCTTCTTATGCACGAGAACTATGCTTGGATCAGTGGTTTAGCATGTGTCTTCTCCTTGATTGTCTTTGGTCTTTCATACAACTGA

Homology

[Close]

BLAST of CmoCh15G008750 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.3e-37
Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 1


Query: 1   MASTSHHTCLNMNVLSSSVHTIKQRCYEIMSFSTPRDCLPIWRAREQRLEPDKGHSN-VG 60
           MASTSH T L+M+  SS + TI QR Y +    TP +CLP++   +Q  +     S  +G
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KAIIGLTFQALLAMFISSPSSSPPLLRV-LFGATMFISFLLSFAGIFLRNAFPKAARLFE 120
           K I+ L+FQA+LA+FISSP +SPP L +  F A +FISF +SFA +FL N+FP+ A LFE
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KLGALFAAIGVSIIASFLLMHENYAWISGLACVFSLIVFGLSY 162
           K+GALF+A GV  IASFLL+H+N+AWI  +AC FS+IVF LS+
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSF 163

[Close]

BLAST of CmoCh15G008750 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-29
Identity = 82/161 (50.93%), Postives = 109/161 (67.70%), Query Frame = 1


Query: 1   MASTSHHTCLNMNVLSSSVHTIKQRCYEIMSFSTPRDCLPIWRAREQRLEPDKGHSNVGK 60
           M S+S    ++MN L S + +I +R  EI        C+ +  A        K  +NVG 
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPI---CIIMQTASPAN--SSKTENNVGT 60

Query: 61  AIIGLTFQALLAMFISSPSSSPPLLRVLFGATMFISFLLSFAGIFLRNAFPKAARLFEKL 120
            I+GLTFQA+LA+FI+S +SSPPLL  LFGA + ISF +SF G+FL++ FP+ A LFEK+
Sbjct: 61  TILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKI 120

Query: 121 GALFAAIGVSIIASFLLMHENYAWISGLACVFSLIVFGLSY 162
           GAL AAIGV I+AS LL+H+N+AWIS LAC FSL+ F LS+
Sbjct: 121 GALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSF 155

[Close]

BLAST of CmoCh15G008750 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 69/166 (41.57%), Postives = 93/166 (56.02%), Query Frame = 1


Query: 1   MASTS-HHTCLNMNVLSSSVHTIKQRCYEIMSFS---TPRDCLPIWRAREQRLEPDKGHS 60
           MA T  H   L+MN L+S +  +  R   I S +      DCLPI+  + QR  P     
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIY-IKMQRPSPVNS-P 60

Query: 61  NVGKAIIGLTFQALLAMFIS-SPSSSPPLLRVLFGATMFISFLLSFAGIFLRNAFPKAAR 120
             G   + LTFQA++ +F+S +PSSS PL   LF A M  SF+ S+ G+ L+  FPK A+
Sbjct: 61  QFGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQ 120

Query: 121 LFEKLGALFAAIGVSIIASFLLMHENYAWISGLACVFSLIVFGLSY 162
           L +  GALFAAIG  II S LL++ N+ WI  LA    L  F +S+
Sbjct: 121 LLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISF 163

[Close]

BLAST of CmoCh15G008750 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 45/127 (35.43%), Postives = 76/127 (59.84%), Query Frame = 1


Query: 37  DCLPI----WRAREQRLEPDKGHSNVGKAIIGLTFQALLAMFISSP-SSSPPLLRV-LFG 96
           DC+P+         Q  +P +   ++GK I+ L+FQ ++A+ +SS    +  +L + +  
Sbjct: 78  DCIPLSINSLEIEMQSYQP-RPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVK 137

Query: 97  ATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWISGLAC 156
            +M ++F  SF+GIFLR+++PK A + E +G+L AA+G  I+ S  L    Y W++ LAC
Sbjct: 138 ISMIMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLAC 197

Query: 157 VFSLIVF 158
            FSL+ F
Sbjct: 198 AFSLLAF 202

[Close]

BLAST of CmoCh15G008750 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 1


Query: 1   MASTSHHTCLNMNVLSSSVHTIKQRCYEIMSFSTPRDCLPIWRAREQRLEPDKGHSN-VG 60
           MASTSH T L+M+  SS + TI QR Y +    TP +CLP++   +Q  +     S  +G
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KAIIGLTFQALLAMFISSPSSSPPLLRV-LFGATMFISFLLSFAGIFLRNAFPKAARLFE 120
           K I+ L+FQA+LA+FISSP +SPP L +  F A +FISF +SFA +FL N+FP+ A LFE
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KLGALFAAIGVSIIASFLLMHENYAWISGLACVFSLIVFGLSY 162
           K+GALF+A GV  IASFLL+H+N+AWI  +AC FS+IVF LS+
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSF 163

[Close]

BLAST of CmoCh15G008750 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 82/161 (50.93%), Postives = 109/161 (67.70%), Query Frame = 1


Query: 1   MASTSHHTCLNMNVLSSSVHTIKQRCYEIMSFSTPRDCLPIWRAREQRLEPDKGHSNVGK 60
           M S+S    ++MN L S + +I +R  EI        C+ +  A        K  +NVG 
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPI---CIIMQTASPAN--SSKTENNVGT 60

Query: 61  AIIGLTFQALLAMFISSPSSSPPLLRVLFGATMFISFLLSFAGIFLRNAFPKAARLFEKL 120
            I+GLTFQA+LA+FI+S +SSPPLL  LFGA + ISF +SF G+FL++ FP+ A LFEK+
Sbjct: 61  TILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKI 120

Query: 121 GALFAAIGVSIIASFLLMHENYAWISGLACVFSLIVFGLSY 162
           GAL AAIGV I+AS LL+H+N+AWIS LAC FSL+ F LS+
Sbjct: 121 GALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSF 155

[Close]

BLAST of CmoCh15G008750 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-17
Identity = 69/166 (41.57%), Postives = 93/166 (56.02%), Query Frame = 1


Query: 1   MASTS-HHTCLNMNVLSSSVHTIKQRCYEIMSFS---TPRDCLPIWRAREQRLEPDKGHS 60
           MA T  H   L+MN L+S +  +  R   I S +      DCLPI+  + QR  P     
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIY-IKMQRPSPVNS-P 60

Query: 61  NVGKAIIGLTFQALLAMFIS-SPSSSPPLLRVLFGATMFISFLLSFAGIFLRNAFPKAAR 120
             G   + LTFQA++ +F+S +PSSS PL   LF A M  SF+ S+ G+ L+  FPK A+
Sbjct: 61  QFGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQ 120

Query: 121 LFEKLGALFAAIGVSIIASFLLMHENYAWISGLACVFSLIVFGLSY 162
           L +  GALFAAIG  II S LL++ N+ WI  LA    L  F +S+
Sbjct: 121 LLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISF 163

[Close]

BLAST of CmoCh15G008750 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 1


Query: 37  DCLPIWRAR---EQRLEPDKGHSNVGKAIIGLTFQALLAMFISS-------PSSSPPLLR 96
           DCLPI+      E +    K   ++GK ++GLTFQA++ + ++S           P LL 
Sbjct: 75  DCLPIYLHGCQIEVQSYQSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLP 134

Query: 97  V-LFGATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWI 156
           + + G  M I+F   F+ IFL  A+P+AA L EK+G++ AA+G  ++ S  L +  + WI
Sbjct: 135 LHMVGVAMVIAFAACFSAIFLTRAYPRAASLIEKIGSVSAALGFFLMTSIFLSN-IFIWI 194

Query: 157 SGLACVFSLIVFGLSY 162
             LAC FSL+ F L++
Sbjct: 195 CWLACAFSLLAFTLAF 209

[Close]

BLAST of CmoCh15G008750 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 45/127 (35.43%), Postives = 76/127 (59.84%), Query Frame = 1


Query: 37  DCLPI----WRAREQRLEPDKGHSNVGKAIIGLTFQALLAMFISSP-SSSPPLLRV-LFG 96
           DC+P+         Q  +P +   ++GK I+ L+FQ ++A+ +SS    +  +L + +  
Sbjct: 78  DCIPLSINSLEIEMQSYQP-RPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVK 137

Query: 97  ATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWISGLAC 156
            +M ++F  SF+GIFLR+++PK A + E +G+L AA+G  I+ S  L    Y W++ LAC
Sbjct: 138 ISMIMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLAC 197

Query: 157 VFSLIVF 158
            FSL+ F
Sbjct: 198 AFSLLAF 202

The following BLAST results are available for this feature:

BLAST of CmoCh15G008750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G008750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJP2_CUCSA	9.3e-37	53.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1	[more]
A0A0A0KJN8_CUCSA	9.3e-29	50.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1	[more]
A0A0A0KQ03_CUCSA	3.7e-17	41.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1	[more]
A0A061EGV0_THECC	2.8e-09	35.43	Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ...	[more]

BLAST of CmoCh15G008750 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G008750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194631\|gb\|KGN49808.1\|	1.3e-36	53.37	hypothetical protein Csa_5G137410 [Cucumis sativus]	[more]
gi\|700194626\|gb\|KGN49803.1\|	1.3e-28	50.93	hypothetical protein Csa_5G136870 [Cucumis sativus]	[more]
gi\|700194629\|gb\|KGN49806.1\|	5.3e-17	41.57	hypothetical protein Csa_5G136900 [Cucumis sativus]	[more]
gi\|645277436\|ref\|XP_008243769.1\|	2.5e-11	36.76	PREDICTED: uncharacterized protein LOC103341994 [Prunus mume]	[more]
gi\|590698393\|ref\|XP_007045702.1\|	4.1e-09	35.43	Ileal sodium/bile acid cotransporter, putative [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008750.1	CmoCh15G008750.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G008750	Cucsa.374360	Cucumber (Gy14) v1	cgycmoB1031
CmoCh15G008750	CmaCh15G008430	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G008750	MELO3C005175	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G008750	MELO3C005175.2	Melon (DHL92) v3.6.1	cmomedB272
CmoCh15G008750	Cla97C01G007730	Watermelon (97103) v2	cmowmbB271
CmoCh15G008750	Bhi12G000922	Wax gourd	cmowgoB0370
CmoCh15G008750	CsGy5G012670	Cucumber (Gy14) v2	cgybcmoB587

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G008750	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G008750	Watermelon (97103) v1	cmowmB268
CmoCh15G008750	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G008750	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G008750	Bottle gourd (USVL1VR-Ls)	cmolsiB256
CmoCh15G008750	Silver-seed gourd	carcmoB0647
CmoCh15G008750	Silver-seed gourd	carcmoB1118
CmoCh15G008750	Cucumber (Chinese Long) v3	cmocucB0351
CmoCh15G008750	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G008750	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G008750	Wild cucumber (PI 183967)	cmocpiB299
CmoCh15G008750	Cucumber (Chinese Long) v2	cmocuB290