CmoCh15G007100 (gene) Cucurbita moschata (Rifu)

NameCmoCh15G007100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGlycine-rich family protein
LocationCmo_Chr15 : 3451977 .. 3453672 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTGGTTTCGATTTTGAGCTTAGTAGGTTAGATCCAGTATTTTTTTATGGAAGACGTGGTATTCTTACGGCGCTTTGATTTGATTGCATATCTCTCGGTCTCTTTTCTAACTAATTGTTAGAAGCTTCGTGAATATTATGTTATCAAATATGAAATGGAAAAATTGTACGCAAAAGATCAAACCATAGGAATGGAAATAAACGTAGGTCATGAATTTAATCACGAAAAGGGGAAAAATCCTCGAATTTTAGTTGAAAAGAGAGCGATGTTCTACGACCTAATGGAATGATAGGGAAAATAGAGAAATATGGTGAATGAGTTCGGGAAAATTTTAGTCATTTAATTACATAGATCAGACACATTGCTTGATGGTTTTATTATGTTGTATGAGTTGAATTCTTATTTCATTACCTTGAACTTCAAATTTAATGGTGCCATTTTCTCAAGCTGTTACTGCCACTTCAAAGATGAAGGTATTTGGTTCTTTCTCTGAGTGTGTGGATAAAGTGACAGCGGGTTTATTACTTCTCCACTCTAGTTCTTGCTCTACACTTTGTTTATCATTTATATGGTCATAGACTTTAGGGAATTTAATCAAGAATAAAAGGCCTGGAAAATGGCTCTTCATTCGAAGGGTTACCATTCGTTTAAGAGGAACTTTTTGTCTTTTTATTATGAAATGCTGCTGGTCAATGTAAACTTTAAAATTGCATTTGCTTTTTGTTTATCTGGTTCTTCAGTGTTAGTGTTCAATGTTAAGTCCATGTCTTAAAGCATGATATATTGCTTCTTTATGGCATATATTTGTTAATCTCTACCTGATTGGGAGCAATCGACAAGGATCTTGTTAAATTTTGTGAAATCACCATAATTTCAACTGAATCAATGAGCTAAAAATGTATTAGATTCCCATGGTTTGGCAGTTTTTTCTTCATTCTCTGCAAGTGCTGGTTAAGAATTTGAATTTTTTTCATGCACCCTTGAAAATGTGCCATCGACATTAGGAGGCTATCAGGAAAAGTTTAATGTTCTCAACTTGTTATTGGGATTTCTCCTTTTGGTTGTCTGTTTAGCAGGATTCTCTAAGTGGGTTTTTGGGACAAGAAGTTGTTTAGCATAGGTTTATTGATCGTGGATGTTTCTCCGAGTTGTTGATTCTGTTGAGCATTACTGACCAACTGTGCACTTGCGTGATATCTTGTAGGCGTTGTGAAATCCCAGAGATCATTCTGGCGTCTCAAAACCATCACTGATTTCTTCTGGGCCATCGTAAACATAATTGGTGTGTTCTTTACCACCTTGTTTTCGGTAAGTTGTTCCTTATTCTTGCGCTGGAAAAAAGTTAGCATTCAGAACAGCCATCATCTTGGGAAGGAAGATTAAGTTTCCATACTTCTTTGTAGATGGAAAAATCAGAGGCTTATAGAAAAGGATCCGGTTCTGGAAAGAAATGGGACGGTGGCGGCCCTGGAGGTCCTGGATCAGGGCCTTACGGTGGTGGTCGTCCACGCGGTCCACCTCGCGGTCTCGATAACGTTCGAGGGATCGATCATAGTAAGTTGAATGCTTATTTTTTTGGAACTCTTTTCCCCCATACATGGATTTGATTTGATTTGATATATTTACTGCTCTGCAATCTTAACTTATTGCAATCAGGTTCATTACCTGCTTGTGGCTCGTGCTGTGGCTAA

mRNA sequence

ATGATTCTGGTTTCGATTTTGAGCTTAGTAGGCGTTGTGAAATCCCAGAGATCATTCTGGCGTCTCAAAACCATCACTGATTTCTTCTGGGCCATCGTAAACATAATTGGTGTGTTCTTTACCACCTTGTTTTCGATGGAAAAATCAGAGGCTTATAGAAAAGGATCCGGTTCTGGAAAGAAATGGGACGGTGGCGGCCCTGGAGGTCCTGGATCAGGGCCTTACGGTGGTGGTCGTCCACGCGGTCCACCTCGCGGTCTCGATAACGTTCGAGGGATCGATCATAGTTCATTACCTGCTTGTGGCTCGTGCTGTGGCTAA

Coding sequence (CDS)

ATGATTCTGGTTTCGATTTTGAGCTTAGTAGGCGTTGTGAAATCCCAGAGATCATTCTGGCGTCTCAAAACCATCACTGATTTCTTCTGGGCCATCGTAAACATAATTGGTGTGTTCTTTACCACCTTGTTTTCGATGGAAAAATCAGAGGCTTATAGAAAAGGATCCGGTTCTGGAAAGAAATGGGACGGTGGCGGCCCTGGAGGTCCTGGATCAGGGCCTTACGGTGGTGGTCGTCCACGCGGTCCACCTCGCGGTCTCGATAACGTTCGAGGGATCGATCATAGTTCATTACCTGCTTGTGGCTCGTGCTGTGGCTAA
BLAST of CmoCh15G007100 vs. TrEMBL
Match: A0A0A0KDW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040550 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.5e-46
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           GSGPY GGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPY-GGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

BLAST of CmoCh15G007100 vs. TrEMBL
Match: A0A068V5M5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016673001 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.3e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1

Query: 7   LSLVGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGG 66
           L LVGVVKS+RS WRL+TITDFFWAIVN IGVFFTT+FSMEK++AYRKGSG  KKWDGGG
Sbjct: 14  LMLVGVVKSKRSLWRLRTITDFFWAIVNFIGVFFTTMFSMEKTDAYRKGSGGSKKWDGGG 73

Query: 67  PGGPGSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           PGGPGSGPYG G PRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 74  PGGPGSGPYGRG-PRGPPRGLDNVRGIDHSSLPACGSCCG 112

BLAST of CmoCh15G007100 vs. TrEMBL
Match: M5XZ42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013824mg PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-41
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKS+RS WRLKTITDFFWAIVN+IGVFF T+FSMEKS+AYRKG  SGKKWDGGGPGGP
Sbjct: 7   GVVKSKRSIWRLKTITDFFWAIVNLIGVFFATMFSMEKSDAYRKGLASGKKWDGGGPGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           G GPY GGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GGGPY-GGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

BLAST of CmoCh15G007100 vs. TrEMBL
Match: A5CA43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015657 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.3e-41
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKS RS WRL+TITDFFWAIVN IGVFF T+FSMEKS+AYRK SGSGKKWDGGGPGGP
Sbjct: 7   GVVKSNRSIWRLRTITDFFWAIVNFIGVFFVTMFSMEKSDAYRKSSGSGKKWDGGGPGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           G GPYGGG PRGPPRGLDNVRGIDHS+LPACGSCCG
Sbjct: 67  GRGPYGGG-PRGPPRGLDNVRGIDHSALPACGSCCG 101

BLAST of CmoCh15G007100 vs. TrEMBL
Match: A9PDX9_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0005s15960g PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKSQRS WRL+TITDFFWAIVN IGVFF+T+FSMEK++AYRKGSGS KKWDGG PGGP
Sbjct: 7   GVVKSQRSIWRLRTITDFFWAIVNFIGVFFSTMFSMEKTDAYRKGSGSSKKWDGG-PGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           GSGPYGGG PRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPYGGG-PRGPPRGLDNVRGIDHSSLPACGSCCG 100

BLAST of CmoCh15G007100 vs. TAIR10
Match: AT4G08230.1 (AT4G08230.1 glycine-rich protein)

HSP 1 Score: 123.6 bits (309), Expect = 7.1e-29
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKW----DGGG 70
           GVVK++R  WRL+TI DFF +I+N+I VFF T+FSMEKS+AYRKGS   KKW     GGG
Sbjct: 7   GVVKAKRPIWRLRTIKDFFLSIINLIQVFFVTMFSMEKSDAYRKGSKPNKKWGGGMGGGG 66

Query: 71  PGGPGSGPYGGGRPRGPPR-GLDNVRGI------DHSSLPACGSCCG 107
            GG GSG  GGGR  GPPR GLDNVRG+      DH+SLPACGSCCG
Sbjct: 67  GGGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGADHNSLPACGSCCG 113

BLAST of CmoCh15G007100 vs. NCBI nr
Match: gi|449446207|ref|XP_004140863.1| (PREDICTED: selenoprotein K [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.9e-46
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           GSGPY GGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPY-GGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

BLAST of CmoCh15G007100 vs. NCBI nr
Match: gi|659089743|ref|XP_008445670.1| (PREDICTED: selenoprotein K [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 7.9e-46
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKSQRSFWRLKTITDFFWAI+NIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP
Sbjct: 7   GVVKSQRSFWRLKTITDFFWAIINIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           GSGPY GGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GSGPY-GGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

BLAST of CmoCh15G007100 vs. NCBI nr
Match: gi|661880528|emb|CDP15814.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 177.9 bits (450), Expect = 9.0e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1

Query: 7   LSLVGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGG 66
           L LVGVVKS+RS WRL+TITDFFWAIVN IGVFFTT+FSMEK++AYRKGSG  KKWDGGG
Sbjct: 14  LMLVGVVKSKRSLWRLRTITDFFWAIVNFIGVFFTTMFSMEKTDAYRKGSGGSKKWDGGG 73

Query: 67  PGGPGSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           PGGPGSGPYG G PRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 74  PGGPGSGPYGRG-PRGPPRGLDNVRGIDHSSLPACGSCCG 112

BLAST of CmoCh15G007100 vs. NCBI nr
Match: gi|470109096|ref|XP_004290838.1| (PREDICTED: selenoprotein K [Fragaria vesca subsp. vesca])

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-41
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKS+RS WRLKTITDFFWAIVN+IGVFF T+FSMEKS+AYRKGSG+ KKWDGGGPGGP
Sbjct: 7   GVVKSKRSIWRLKTITDFFWAIVNLIGVFFATMFSMEKSDAYRKGSGASKKWDGGGPGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           G GPYGGG PRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GGGPYGGG-PRGPPRGLDNVRGIDHSSLPACGSCCG 101

BLAST of CmoCh15G007100 vs. NCBI nr
Match: gi|596288663|ref|XP_007225974.1| (hypothetical protein PRUPE_ppa013824mg [Prunus persica])

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-41
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1

Query: 11  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGP 70
           GVVKS+RS WRLKTITDFFWAIVN+IGVFF T+FSMEKS+AYRKG  SGKKWDGGGPGGP
Sbjct: 7   GVVKSKRSIWRLKTITDFFWAIVNLIGVFFATMFSMEKSDAYRKGLASGKKWDGGGPGGP 66

Query: 71  GSGPYGGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 107
           G GPY GGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 67  GGGPY-GGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDW6_CUCSA5.5e-4697.92Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040550 PE=4 SV=1[more]
A0A068V5M5_COFCA6.3e-4288.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016673001 PE=4 SV=1[more]
M5XZ42_PRUPE1.1e-4189.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013824mg PE=4 SV=1[more]
A5CA43_VITVI5.3e-4188.54Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015657 PE=4 SV=1[more]
A9PDX9_POPTR1.6e-4089.58Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0005s15960g PE=2 SV=... [more]
Match NameE-valueIdentityDescription
AT4G08230.17.1e-2965.42 glycine-rich protein[more]
Match NameE-valueIdentityDescription
gi|449446207|ref|XP_004140863.1|7.9e-4697.92PREDICTED: selenoprotein K [Cucumis sativus][more]
gi|659089743|ref|XP_008445670.1|7.9e-4697.92PREDICTED: selenoprotein K [Cucumis melo][more]
gi|661880528|emb|CDP15814.1|9.0e-4288.00unnamed protein product [Coffea canephora][more]
gi|470109096|ref|XP_004290838.1|1.2e-4189.58PREDICTED: selenoprotein K [Fragaria vesca subsp. vesca][more]
gi|596288663|ref|XP_007225974.1|1.5e-4189.58hypothetical protein PRUPE_ppa013824mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024491Se_SelK/SelG
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051716 cellular response to stimulus
biological_process GO:0050789 regulation of biological process
biological_process GO:0032469 endoplasmic reticulum calcium ion homeostasis
biological_process GO:0006816 calcium ion transport
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0009644 response to high light intensity
biological_process GO:0009408 response to heat
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0006457 protein folding
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0006984 ER-nucleus signaling pathway
biological_process GO:0006950 response to stress
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G007100.1CmoCh15G007100.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024491Selenoprotein SelK/SelGPFAMPF10961DUF2763coord: 11..80
score: 1.6
NoneNo IPR availablePRODOMPD353114coord: 17..53
score: 0
NoneNo IPR availablePANTHERPTHR16875FAMILY NOT NAMEDcoord: 7..106
score: 4.0
NoneNo IPR availablePANTHERPTHR16875:SF0SELENOPROTEIN Kcoord: 7..106
score: 4.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh15G007100CmoCh04G024570Cucurbita moschata (Rifu)cmocmoB262