CmoCh15G005440 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G005440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRestricted tev movement 2
LocationCmo_Chr15 : 2586023 .. 2586784 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAAATAGAAAGAGCCATATATAAATGCTTCTTCTCTTGCATGTACAAACACCCAATTCCATAGCCATCTAGCTCATTCTTTGGTGGTGGATAGAAGCACTTTCAAAGATAAAATTACCATTTTACCCTTCTCCTCGAATTTTTTCACATCTTCGAACGTAAGCTAGAAAGCTCTTTCGATGTCGAGCCAGATCGTGGAACAAGATTGGGGAGACGTAACTCGCTCAGATCAACCGTTTTCCCCCGATACAAAATGGGCAGAAGAGGAACACAGTCGAATACTGAGCATGAAACTTCCAGGTAAATTCAACTAAGATTATAAACATACATATACGTGTGTGTGTGTATATAGGTGGTTAAATTAATATATTTCATCGATCTTGTTTAGGGTTTCCAAAGAATCAACTACAAATCACCTTGAATGCAGCAACAAGGACTCTTACAGTTACTGGACAGAAACAAGATGGCCTATTCAACATTATTCGTTTGAACGAACGTATATCGATCGACGACACATGCTCCCTAGACGGAGTGTTTGCAAGACTGCATGATCAGACTCTTTTTGTTACCTTTTCCAAGAAGAAATAAATCGTCATTTCAATCGAAATGAAGATTTACGTTCATAACGAATAATGATCATCTTCTATGTACATAATAGAGTTTATGTATTTCGATACCTGTAATTGAATCGTGTGTGAAGAACGATGTTATTGTGCACTTGAATATGAATAAATTGAATATTTACATTTATGTACCGGAAA

mRNA sequence

CTAAAATAGAAAGAGCCATATATAAATGCTTCTTCTCTTGCATGTACAAACACCCAATTCCATAGCCATCTAGCTCATTCTTTGGTGGTGGATAGAAGCACTTTCAAAGATAAAATTACCATTTTACCCTTCTCCTCGAATTTTTTCACATCTTCGAACGTAAGCTAGAAAGCTCTTTCGATGTCGAGCCAGATCGTGGAACAAGATTGGGGAGACGTAACTCGCTCAGATCAACCGTTTTCCCCCGATACAAAATGGGCAGAAGAGGAACACAGTCGAATACTGAGCATGAAACTTCCAGGGTTTCCAAAGAATCAACTACAAATCACCTTGAATGCAGCAACAAGGACTCTTACAGTTACTGGACAGAAACAAGATGGCCTATTCAACATTATTCGTTTGAACGAACGTATATCGATCGACGACACATGCTCCCTAGACGGAGTGTTTGCAAGACTGCATGATCAGACTCTTTTTGTTACCTTTTCCAAGAAGAAATAAATCGTCATTTCAATCGAAATGAAGATTTACGTTCATAACGAATAATGATCATCTTCTATGTACATAATAGAGTTTATGTATTTCGATACCTGTAATTGAATCGTGTGTGAAGAACGATGTTATTGTGCACTTGAATATGAATAAATTGAATATTTACATTTATGTACCGGAAA

Coding sequence (CDS)

ATGTCGAGCCAGATCGTGGAACAAGATTGGGGAGACGTAACTCGCTCAGATCAACCGTTTTCCCCCGATACAAAATGGGCAGAAGAGGAACACAGTCGAATACTGAGCATGAAACTTCCAGGGTTTCCAAAGAATCAACTACAAATCACCTTGAATGCAGCAACAAGGACTCTTACAGTTACTGGACAGAAACAAGATGGCCTATTCAACATTATTCGTTTGAACGAACGTATATCGATCGACGACACATGCTCCCTAGACGGAGTGTTTGCAAGACTGCATGATCAGACTCTTTTTGTTACCTTTTCCAAGAAGAAATAA
Homology
[Close]
BLAST of CmoCh15G005440 vs. TrEMBL
Match: A0A0A0KB53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046370 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-22
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 1 

Query: 1   MSSQIVEQDWGDV-TRSDQPFSPDTKW--AEEEHSRILSMKLPGFPKNQLQITLNAATRT 60
           MSSQIV QDW +V T+ +Q F P   +  +EE++    SMKLPGF K++L+I LN  TR 
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 60

Query: 61  LTVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
           + VTGQK DGLFNI RLNER++I + C L+GV A+L + TL VTF K+K
Sbjct: 61  IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 109

[Close]
BLAST of CmoCh15G005440 vs. TrEMBL
Match: A0A078DST4_BRANA (BnaA10g14590D protein OS=Brassica napus GN=BnaA10g14590D PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTSEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I+I  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEINIPMTVDIDSVSAMFKDNKLYIRHSKVK 95

[Close]
BLAST of CmoCh15G005440 vs. TrEMBL
Match: A0A078FVZ1_BRANA (BnaC09g36900D protein OS=Brassica napus GN=BnaC09g36900D PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTSEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I++  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEITVPMTVDIDSVSAMFKDNKLYIRHSKVK 95

[Close]
BLAST of CmoCh15G005440 vs. TrEMBL
Match: A0A0D3EDK7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTSEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I++  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEITVPMTVDIDSVSAMFKDNKLYIRHSKVK 95

[Close]
BLAST of CmoCh15G005440 vs. TrEMBL
Match: M4CDR7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTFEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I+I  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEINIPMTVDIDSVSAMFKDNKLYIRHSKVK 95

[Close]
BLAST of CmoCh15G005440 vs. TAIR10
Match: AT5G20970.1 (AT5G20970.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1 

Query: 13  VTRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNII 72
           + R  Q F P T+W  E  + +L   LPGF K QL++++  ATR L +TG++  G    I
Sbjct: 6   IERVYQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSV-TATRKLRLTGERPTGGNKWI 65

Query: 73  RLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
           R ++ I +  T  +D V A   D  L++   K K
Sbjct: 66  RFHQEIPVPLTVDIDSVSAMFKDNKLYIRHPKLK 98

[Close]
BLAST of CmoCh15G005440 vs. TAIR10
Match: AT5G04890.1 (AT5G04890.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 22/88 (25.00%), Postives = 46/88 (52.27%), Query Frame = 1 

Query: 18  QPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIRLNER 77
           + F P ++W ++  + IL++ L GF K Q+++T   +++ + VTG++        R NE 
Sbjct: 17  EDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEV 76

Query: 78  ISIDDTCSLDGVFARLHDQTLFVTFSKK 106
            ++   C +D +     +  L +T  K+
Sbjct: 77  FTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]
BLAST of CmoCh15G005440 vs. NCBI nr
Match: gi|700190855|gb|KGN46059.1| (hypothetical protein Csa_6G046370 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-22
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 1 

Query: 1   MSSQIVEQDWGDV-TRSDQPFSPDTKW--AEEEHSRILSMKLPGFPKNQLQITLNAATRT 60
           MSSQIV QDW +V T+ +Q F P   +  +EE++    SMKLPGF K++L+I LN  TR 
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 60

Query: 61  LTVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
           + VTGQK DGLFNI RLNER++I + C L+GV A+L + TL VTF K+K
Sbjct: 61  IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 109

[Close]
BLAST of CmoCh15G005440 vs. NCBI nr
Match: gi|674940906|emb|CDX92420.1| (BnaA10g14590D [Brassica napus])

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTSEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I+I  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEINIPMTVDIDSVSAMFKDNKLYIRHSKVK 95

[Close]
BLAST of CmoCh15G005440 vs. NCBI nr
Match: gi|922557902|ref|XP_013607051.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Brassica oleracea var. oleracea])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTSEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I++  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEITVPMTVDIDSVSAMFKDNKLYIRHSKVK 95

[Close]
BLAST of CmoCh15G005440 vs. NCBI nr
Match: gi|674916619|emb|CDY16583.1| (BnaC09g36900D [Brassica napus])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTSEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I++  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEITVPMTVDIDSVSAMFKDNKLYIRHSKVK 95

[Close]
BLAST of CmoCh15G005440 vs. NCBI nr
Match: gi|923893210|ref|XP_013717549.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Brassica napus])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 14  TRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIR 73
           TR  Q F P T+W  E  + IL + LPGF K Q+++ +   TR L +TG++  G    IR
Sbjct: 4   TRIYQEFEPATRWTSEPDAEILVVDLPGFKKEQVKVAV-TTTRKLRLTGERPTGGNKWIR 63

Query: 74  LNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 107
               I++  T  +D V A   D  L++  SK K
Sbjct: 64  FRHEITVPMTVDIDSVSAMFKDNKLYIRHSKVK 95

The following BLAST results are available for this feature:
BLAST of CmoCh15G005440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G005440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB53_CUCSA1.9e-2255.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046370 PE=4 SV=1[more]
A0A078DST4_BRANA1.7e-0737.63BnaA10g14590D protein OS=Brassica napus GN=BnaA10g14590D PE=3 SV=1[more]
A0A078FVZ1_BRANA2.3e-0736.56BnaC09g36900D protein OS=Brassica napus GN=BnaC09g36900D PE=3 SV=1[more]
A0A0D3EDK7_BRAOL2.3e-0736.56Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1[more]
M4CDR7_BRARP3.9e-0737.63Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1[more]
BLAST of CmoCh15G005440 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20970.12.5e-1035.11 HSP20-like chaperones superfamily protein[more]
AT5G04890.11.3e-0625.00 HSP20-like chaperones superfamily protein[more]
BLAST of CmoCh15G005440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190855|gb|KGN46059.1|2.7e-2255.05hypothetical protein Csa_6G046370 [Cucumis sativus][more]
gi|674940906|emb|CDX92420.1|2.5e-0737.63BnaA10g14590D [Brassica napus][more]
gi|922557902|ref|XP_013607051.1|3.2e-0736.56PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Brassica oleracea va... [more]
gi|674916619|emb|CDY16583.1|3.2e-0736.56BnaC09g36900D [Brassica napus][more]
gi|923893210|ref|XP_013717549.1|3.2e-0736.56PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G005440.1CmoCh15G005440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 5..65
score: 2.
IPR008978HSP20-like chaperoneunknownSSF49764HSP20-like chaperonescoord: 18..105
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G005440Cucsa.364460Cucumber (Gy14) v1cgycmoB0996
CmoCh15G005440CmaCh15G005360Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G005440Csa6G046370Cucumber (Chinese Long) v2cmocuB297
CmoCh15G005440ClCG08G008460Watermelon (Charleston Gray)cmowcgB263
CmoCh15G005440CsaV3_6G004450Cucumber (Chinese Long) v3cmocucB0359
CmoCh15G005440Cla97C08G151220Watermelon (97103) v2cmowmbB300
CmoCh15G005440Bhi04G001302Wax gourdcmowgoB0393
CmoCh15G005440Carg01663Silver-seed gourdcarcmoB1118
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh15G005440CmoCh04G026180Cucurbita moschata (Rifu)cmocmoB262
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G005440Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G005440Wild cucumber (PI 183967)cmocpiB306
CmoCh15G005440Melon (DHL92) v3.5.1cmomeB262
CmoCh15G005440Watermelon (97103) v1cmowmB248
CmoCh15G005440Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G005440Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G005440Bottle gourd (USVL1VR-Ls)cmolsiB282
CmoCh15G005440Cucumber (Gy14) v2cgybcmoB721
CmoCh15G005440Melon (DHL92) v3.6.1cmomedB297
CmoCh15G005440Silver-seed gourdcarcmoB0092