Cla97C08G151220 (gene) Watermelon (97103) v2

Overview
NameCla97C08G151220
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionInactive protein RESTRICTED TEV MOVEMENT 2
LocationCla97Chr08 : 19584820 .. 19585223 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGCCAGATCGTAACTCCAAATCGGAGATCCGTAACTCAACCAAATCAACAGTTTTTTCCAGATAAAAGATGGGAGGATGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGGTAAATTTGGCTAAAGTTAACTAGATTGATATAGATTTGTGTGTATAAATTAATTACGTTCGTTCGATTTGGTGTAGGTTTTTCAAAAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGACAAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTATATTACATTTCCCAAAAACAGATAA

mRNA sequence

ATGTCAAGCCAGATCGTAACTCCAAATCGGAGATCCGTAACTCAACCAAATCAACAGTTTTTTCCAGATAAAAGATGGGAGGATGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGACAAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTATATTACATTTCCCAAAAACAGATAA

Coding sequence (CDS)

ATGTCAAGCCAGATCGTAACTCCAAATCGGAGATCCGTAACTCAACCAAATCAACAGTTTTTTCCAGATAAAAGATGGGAGGATGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGACAAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTATATTACATTTCCCAAAAACAGATAA

Protein sequence

MSSQIVTPNRRSVTQPNQQFFPDKRWEDDEENNQMSLSMVLPDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
Homology
[Close]
BLAST of Cla97C08G151220 vs. NCBI nr
Match: KGN46059.1 (hypothetical protein Csa_6G046370 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 6.6e-25
Identity = 68/109 (62.39%), Postives = 79/109 (72.48%), Query Frame = 0 

Query: 1   MSSQIVTPN-RRSVTQPNQQFFPDKRWEDDEENNQMSLSMVLP----DRLRINLNTRTRT 60
           MSSQIV  + R  VTQ NQQFFP   +E+ EE N+ S SM LP    DRLRINLNTRTR 
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 60

Query: 61  LIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR 105
           ++VTGQKSDGLFNI RLNER+ I E C L+GV AKL N+ L +TF K +
Sbjct: 61  IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 109

[Close]
BLAST of Cla97C08G151220 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 0 

Query: 1   MSSQIVTPNRRSVTQPNQQFFPDKRWEDDEENNQMSLSMVLP----DRLRINLNTRTRTL 60
           MSSQIV  +   VT+ +Q F PD +W   EE +   LSM LP    ++L+I LN  TRTL
Sbjct: 1   MSSQIVEQDWGDVTRSDQPFSPDTKWA--EEEHSRILSMKLPGFPKNQLQITLNAATRTL 60

Query: 61  IVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR 105
            VTGQK DGLFNI+RLNERI I++ CSLDGV A+L +  L++TF K +
Sbjct: 61  TVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 106

[Close]
BLAST of Cla97C08G151220 vs. TrEMBL
Match: tr|A0A0A0KB53|A0A0A0KB53_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-25
Identity = 68/109 (62.39%), Postives = 79/109 (72.48%), Query Frame = 0 

Query: 1   MSSQIVTPN-RRSVTQPNQQFFPDKRWEDDEENNQMSLSMVLP----DRLRINLNTRTRT 60
           MSSQIV  + R  VTQ NQQFFP   +E+ EE N+ S SM LP    DRLRINLNTRTR 
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 60

Query: 61  LIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR 105
           ++VTGQKSDGLFNI RLNER+ I E C L+GV AKL N+ L +TF K +
Sbjct: 61  IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 109

The following BLAST results are available for this feature:
BLAST of Cla97C08G151220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46059.16.6e-2562.39hypothetical protein Csa_6G046370 [Cucumis sativus][more]
XP_022939359.14.1e-1953.70uncharacterized protein LOC111445297 [Cucurbita moschata][more]
BLAST of Cla97C08G151220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KB53|A0A0A0KB53_CUCSA4.4e-2562.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1[more]
BLAST of Cla97C08G151220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C08G151220 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G151220.1Cla97C08G151220.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C08G151220Csa6G046370Cucumber (Chinese Long) v2cuwmbB488
Cla97C08G151220ClCG08G008460Watermelon (Charleston Gray)wcgwmbB336
Cla97C08G151220Cucsa.364460Cucumber (Gy14) v1cgywmbB629
Cla97C08G151220CmaCh15G005360Cucurbita maxima (Rimu)cmawmbB317
Cla97C08G151220CmoCh15G005440Cucurbita moschata (Rifu)cmowmbB300
Cla97C08G151220Carg01663Silver-seed gourdcarwmbB0864
Cla97C08G151220CsaV3_6G004450Cucumber (Chinese Long) v3cucwmbB506
Cla97C08G151220Bhi04G001302Wax gourdwgowmbB329
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C08G151220Watermelon (97103) v2wmbwmbB143
Cla97C08G151220Silver-seed gourdcarwmbB0064
Cla97C08G151220Cucumber (Gy14) v2cgybwmbB464
Cla97C08G151220Cucurbita maxima (Rimu)cmawmbB788
Cla97C08G151220Cucurbita moschata (Rifu)cmowmbB762
Cla97C08G151220Wild cucumber (PI 183967)cpiwmbB514
Cla97C08G151220Bottle gourd (USVL1VR-Ls)lsiwmbB448
Cla97C08G151220Melon (DHL92) v3.6.1medwmbB295
Cla97C08G151220Melon (DHL92) v3.5.1mewmbB307
Cla97C08G151220Watermelon (97103) v1wmwmbB100
Cla97C08G151220Wax gourdwgowmbB541