CmoCh04G026180 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRestricted tev movement 2
LocationCmo_Chr04 : 19079629 .. 19080652 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTACACAAAATTAAATTATTTGAAGTTTTGAAGATTTTCAATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTAATTTCTAACTTCGTTCTTATTTAATTTCATGTTAAAACGCTACTTTGATCTTCGTACGTTATGTTTAAACGTCAAATTTTTGTTTTTGAATATTATCTTGTGATCTGTGAATTGTTTTTTAGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAATTTCCATCCAAATCGAGATTTACTTTCTTAATGAATAAACACGGACTTCCTAGGTTTGTGTAAAACACTATATATACATACATATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACGTACACGTGCTATGTATTATTTTTATCAAATTTGATTATGTTATGGTCGGTGATATGTGAGAAACTCGAGTAGTTTGGAGTACGTGAAATCTCATGTGAATCAAGAAGGACCATCTTGCAAAGCTAAACACTTATGGTGACCGATGGTCTTCAGAACAGTAGGAAGAGGTAAGGACTCTGACCGTGTGCCTGTTGAAGAATGAGTCGGTGACTCATAAGCAGTGGCTTGGTTAAGGGAACCTACTGTGAGAAACTACAAAATATATATATCTATATATATATATATATATGTAAATGTTTTCTATTGGCTTCAGATTCTCAAGCTCGTCTTGAGTTGCTTTTACGAGTGAAAATAATACGGAGTCTTTCAA

mRNA sequence

ATTCATTACACAAAATTAAATTATTTGAAGTTTTGAAGATTTTCAATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAATTTCCATCCAAATCGAGATTTACTTTCTTAATGAATAAACACGGACTTCCTAGGTTTGTGTAAAACACTATATATACATACGTACACGTGCTATGTATTATTTTTATCAAATTTGATTATGTTATGGTCGGTGATATGTGAGAAACTCGAGTAGTTTGGAGTACGTGAAATCTCATGTGAATCAAGAAGGACCATCTTGCAAAGCTAAACACTTATGGTGACCGATGGTCTTCAGAACAGTAGGAAGAGGTAAGGACTCTGACCGTGTGCCTGTTGAAGAATGAGTCGGTGACTCATAAGCAGTGGCTTGGTTAAGGGAACCTACTGTGAGAAACTACAAAATATATATATCTATATATATATATATATATGTAAATGTTTTCTATTGGCTTCAGATTCTCAAGCTCGTCTTGAGTTGCTTTTACGAGTGAAAATAATACGGAGTCTTTCAA

Coding sequence (CDS)

ATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAA
Homology
[Close]
BLAST of CmoCh04G026180 vs. TrEMBL
Match: A0A0A0KB53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046370 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-06
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 1 

Query: 1   MSRQVFGWD---EMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSREL 60
           MS Q+   D    + QQ + + P + ++E +E NK  + M +   G S+++L+I+++   
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLP--GFSKDRLRINLNTRT 60

Query: 61  KTIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           + I +   K +G +NI R+NE + IK +C L+ V A    + LI+TF K+
Sbjct: 61  RIIVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKE 108

[Close]
BLAST of CmoCh04G026180 vs. NCBI nr
Match: gi|700190855|gb|KGN46059.1| (hypothetical protein Csa_6G046370 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-06
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 1 

Query: 1   MSRQVFGWD---EMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSREL 60
           MS Q+   D    + QQ + + P + ++E +E NK  + M +   G S+++L+I+++   
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLP--GFSKDRLRINLNTRT 60

Query: 61  KTIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           + I +   K +G +NI R+NE + IK +C L+ V A    + LI+TF K+
Sbjct: 61  RIIVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKE 108

The following BLAST results are available for this feature:
BLAST of CmoCh04G026180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB53_CUCSA5.7e-0631.82Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046370 PE=4 SV=1[more]
BLAST of CmoCh04G026180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190855|gb|KGN46059.1|8.2e-0631.82hypothetical protein Csa_6G046370 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026180.1CmoCh04G026180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 8..106
score: 6.
IPR008978HSP20-like chaperoneunknownSSF49764HSP20-like chaperonescoord: 14..107
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G026180Cucsa.364460Cucumber (Gy14) v1cgycmoB1004
CmoCh04G026180Csa6G046370Cucumber (Chinese Long) v2cmocuB760
CmoCh04G026180CsaV3_6G004450Cucumber (Chinese Long) v3cmocucB0898
CmoCh04G026180Bhi04G001302Wax gourdcmowgoB0858
CmoCh04G026180Carg01663Silver-seed gourdcarcmoB1121
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G026180CmoCh15G005440Cucurbita moschata (Rifu)cmocmoB262
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G026180Silver-seed gourdcarcmoB0094
CmoCh04G026180Silver-seed gourdcarcmoB1136
CmoCh04G026180Watermelon (97103) v2cmowmbB741
CmoCh04G026180Watermelon (97103) v2cmowmbB762
CmoCh04G026180Wax gourdcmowgoB0894
CmoCh04G026180Cucurbita moschata (Rifu)cmocmoB345
CmoCh04G026180Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G026180Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G026180Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G026180Wild cucumber (PI 183967)cmocpiB769
CmoCh04G026180Melon (DHL92) v3.5.1cmomeB667
CmoCh04G026180Watermelon (Charleston Gray)cmowcgB682
CmoCh04G026180Watermelon (97103) v1cmowmB663
CmoCh04G026180Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G026180Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G026180Bottle gourd (USVL1VR-Ls)cmolsiB676
CmoCh04G026180Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G026180Cucumber (Gy14) v2cgybcmoB635
CmoCh04G026180Cucumber (Gy14) v2cgybcmoB815
CmoCh04G026180Melon (DHL92) v3.6.1cmomedB754