CmoCh04G026180.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026180.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRestricted tev movement 2
LocationCmo_Chr04 : 19079629 .. 19080652 (-)
Sequence length827
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTACACAAAATTAAATTATTTGAAGTTTTGAAGATTTTCAATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTAATTTCTAACTTCGTTCTTATTTAATTTCATGTTAAAACGCTACTTTGATCTTCGTACGTTATGTTTAAACGTCAAATTTTTGTTTTTGAATATTATCTTGTGATCTGTGAATTGTTTTTTAGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAATTTCCATCCAAATCGAGATTTACTTTCTTAATGAATAAACACGGACTTCCTAGGTTTGTGTAAAACACTATATATACATACATATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACGTACACGTGCTATGTATTATTTTTATCAAATTTGATTATGTTATGGTCGGTGATATGTGAGAAACTCGAGTAGTTTGGAGTACGTGAAATCTCATGTGAATCAAGAAGGACCATCTTGCAAAGCTAAACACTTATGGTGACCGATGGTCTTCAGAACAGTAGGAAGAGGTAAGGACTCTGACCGTGTGCCTGTTGAAGAATGAGTCGGTGACTCATAAGCAGTGGCTTGGTTAAGGGAACCTACTGTGAGAAACTACAAAATATATATATCTATATATATATATATATATGTAAATGTTTTCTATTGGCTTCAGATTCTCAAGCTCGTCTTGAGTTGCTTTTACGAGTGAAAATAATACGGAGTCTTTCAA

mRNA sequence

ATTCATTACACAAAATTAAATTATTTGAAGTTTTGAAGATTTTCAATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAATTTCCATCCAAATCGAGATTTACTTTCTTAATGAATAAACACGGACTTCCTAGGTTTGTGTAAAACACTATATATACATACGTACACGTGCTATGTATTATTTTTATCAAATTTGATTATGTTATGGTCGGTGATATGTGAGAAACTCGAGTAGTTTGGAGTACGTGAAATCTCATGTGAATCAAGAAGGACCATCTTGCAAAGCTAAACACTTATGGTGACCGATGGTCTTCAGAACAGTAGGAAGAGGTAAGGACTCTGACCGTGTGCCTGTTGAAGAATGAGTCGGTGACTCATAAGCAGTGGCTTGGTTAAGGGAACCTACTGTGAGAAACTACAAAATATATATATCTATATATATATATATATATGTAAATGTTTTCTATTGGCTTCAGATTCTCAAGCTCGTCTTGAGTTGCTTTTACGAGTGAAAATAATACGGAGTCTTTCAA

Coding sequence (CDS)

ATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAA
Homology
[Close]
BLAST of CmoCh04G026180.1 vs. TrEMBL
Match: A0A0A0KB53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046370 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-06
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 1 

Query: 1   MSRQVFGWD---EMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSREL 60
           MS Q+   D    + QQ + + P + ++E +E NK  + M +   G S+++L+I+++   
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLP--GFSKDRLRINLNTRT 60

Query: 61  KTIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           + I +   K +G +NI R+NE + IK +C L+ V A    + LI+TF K+
Sbjct: 61  RIIVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKE 108

[Close]
BLAST of CmoCh04G026180.1 vs. NCBI nr
Match: gi|700190855|gb|KGN46059.1| (hypothetical protein Csa_6G046370 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-06
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 1 

Query: 1   MSRQVFGWD---EMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSREL 60
           MS Q+   D    + QQ + + P + ++E +E NK  + M +   G S+++L+I+++   
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLP--GFSKDRLRINLNTRT 60

Query: 61  KTIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           + I +   K +G +NI R+NE + IK +C L+ V A    + LI+TF K+
Sbjct: 61  RIIVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKE 108

The following BLAST results are available for this feature:
BLAST of CmoCh04G026180.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026180.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB53_CUCSA5.7e-0631.82Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046370 PE=4 SV=1[more]
BLAST of CmoCh04G026180.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026180.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190855|gb|KGN46059.1|8.2e-0631.82hypothetical protein Csa_6G046370 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G026180CmoCh04G026180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G026180.1CmoCh04G026180.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G026180.1.three_prime_UTR.2CmoCh04G026180.1.three_prime_UTR.2three_prime_UTR
CmoCh04G026180.1.three_prime_UTR.1CmoCh04G026180.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G026180.1.CDS.2CmoCh04G026180.1.CDS.2CDS
CmoCh04G026180.1.CDS.1CmoCh04G026180.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G026180.1.five_prime_UTR.1CmoCh04G026180.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G026180.1.exon.3CmoCh04G026180.1.exon.3exon
CmoCh04G026180.1.exon.2CmoCh04G026180.1.exon.2exon
CmoCh04G026180.1.exon.1CmoCh04G026180.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 8..106
score: 6.
IPR008978HSP20-like chaperoneunknownSSF49764HSP20-like chaperonescoord: 14..107
score: 5.2