CmoCh14G019130 (gene) Cucurbita moschata (Rifu)

NameCmoCh14G019130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSelf-incompatibility family protein
LocationCmo_Chr14 : 14230057 .. 14230491 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATGAAGATTCTCGTTAGCATTCTGATGCTCATTTTATTTCCATTCTTCACTGTTTTCATGTCATTGTTACCTCCAGAGCAACTGTATGGCATAGAATACGAAGTCCGTGTGATCAACGGCTTCACAAACAACTCCTCACTACCTCTGGTGATATGGTGCGCGTCCAAAGACTGTGATATCGGCGGGCGTGCGCTCCAGGAGCACGATGATTTCAGTTGGCCCGTCAGGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAGCTTGATCGTACAAGGAAGAGTTTTGACGCATTCAAGGTACCAAGAGATATATATCGCTGTAGTGCCCTCAGGAAATGCACTTGGTTGGTTTTAGAAGATGGGTTTTATTTCAGTGACGACGAAGTAAACTGGAAGAAGGATTTCTCGTGGTGA

mRNA sequence

ATGATCATGAAGATTCTCGTTAGCATTCTGATGCTCATTTTATTTCCATTCTTCACTGTTTTCATGTCATTGTTACCTCCAGAGCAACTGTATGGCATAGAATACGAAGTCCGTGTGATCAACGGCTTCACAAACAACTCCTCACTACCTCTGGTGATATGGTGCGCGTCCAAAGACTGTGATATCGGCGGGCGTGCGCTCCAGGAGCACGATGATTTCAGTTGGCCCGTCAGGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAGCTTGATCGTACAAGGAAGAGTTTTGACGCATTCAAGGTACCAAGAGATATATATCGCTGTAGTGCCCTCAGGAAATGCACTTGGTTGGTTTTAGAAGATGGGTTTTATTTCAGTGACGACGAAGTAAACTGGAAGAAGGATTTCTCGTGGTGA

Coding sequence (CDS)

ATGATCATGAAGATTCTCGTTAGCATTCTGATGCTCATTTTATTTCCATTCTTCACTGTTTTCATGTCATTGTTACCTCCAGAGCAACTGTATGGCATAGAATACGAAGTCCGTGTGATCAACGGCTTCACAAACAACTCCTCACTACCTCTGGTGATATGGTGCGCGTCCAAAGACTGTGATATCGGCGGGCGTGCGCTCCAGGAGCACGATGATTTCAGTTGGCCCGTCAGGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAGCTTGATCGTACAAGGAAGAGTTTTGACGCATTCAAGGTACCAAGAGATATATATCGCTGTAGTGCCCTCAGGAAATGCACTTGGTTGGTTTTAGAAGATGGGTTTTATTTCAGTGACGACGAAGTAAACTGGAAGAAGGATTTCTCGTGGTGA
BLAST of CmoCh14G019130 vs. TrEMBL
Match: A0A0A0L6V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133250 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.6e-62
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 1

Query: 28  EQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTT- 87
           EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTT 
Sbjct: 82  EQLFGIEYEVRVINGFTNNSSLPLVIWCASKDGDIGGRALQEHDDFSWPVKTNFWITTTT 141

Query: 88  SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW 145
           SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Sbjct: 142 SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCSWLVMEDGFYFSDDEVNWKKDFSW 199

BLAST of CmoCh14G019130 vs. TrEMBL
Match: M5XJ42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024197mg PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 1

Query: 3   MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDI 62
           MKIL SIL++     F +FMS+L P+  YGIEY++RVINGFTNNSSLPLVIWCAS+  D+
Sbjct: 1   MKILTSILLICGLASFVIFMSILQPQNFYGIEYDIRVINGFTNNSSLPLVIWCASEHSDL 60

Query: 63  GGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTW 122
           GGRALQEHDDFSW +RTNFW  T   F CT+K DRTR+SF+AFK PRD  RC   RKC+W
Sbjct: 61  GGRALQEHDDFSWSLRTNFW-GTNDHFKCTMKWDRTRRSFEAFKAPRDTQRCGPFRKCSW 120

Query: 123 LVLEDGFYFSDDEVNWKKDFSW 145
           LV EDGFYFS+DEVNW+KDFSW
Sbjct: 121 LVREDGFYFSNDEVNWRKDFSW 141

BLAST of CmoCh14G019130 vs. TrEMBL
Match: B9H006_POPTR (Self-incompatibility family protein OS=Populus trichocarpa GN=POPTR_0003s17380g PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-48
Identity = 92/142 (64.79%), Postives = 110/142 (77.46%), Query Frame = 1

Query: 3   MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDI 62
           MK+L +I ++       +FMS+  PE  YG+EY+VRVINGF NNSSLPLVIWC+S + D+
Sbjct: 1   MKVLTNIFLVASLAIGIIFMSIYQPEYFYGLEYDVRVINGFKNNSSLPLVIWCSSNNDDL 60

Query: 63  GGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTW 122
           GGRALQE DDFSW ++TNFW TT   F CT+K D  R+ FDAFKVPRD+ RCS  RKC+W
Sbjct: 61  GGRALQEGDDFSWSLKTNFWGTT--HFLCTMKWDAMRRKFDAFKVPRDLQRCSLFRKCSW 120

Query: 123 LVLEDGFYFSDDEVNWKKDFSW 145
            V EDGFYFS+DEVNWKKDFSW
Sbjct: 121 SVREDGFYFSNDEVNWKKDFSW 140

BLAST of CmoCh14G019130 vs. TrEMBL
Match: B9GMH5_POPTR (Self-incompatibility family protein OS=Populus trichocarpa GN=POPTR_0001s14170g PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 89/142 (62.68%), Postives = 108/142 (76.06%), Query Frame = 1

Query: 3   MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDI 62
           MK+L  I +++      +FMS+  PE   G+EY+VRVINGFTNNSSLPLVIWC+S   D+
Sbjct: 1   MKVLTKIFLVVSLAIGMIFMSIYQPEYFCGLEYDVRVINGFTNNSSLPLVIWCSSDSDDL 60

Query: 63  GGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTW 122
           GGRALQE DDFSW ++ NFW   ++ F CT+K D  R+ FDAFKVPRD+ RCS  R C+W
Sbjct: 61  GGRALQEGDDFSWRLQINFW--CSNHFRCTMKWDAMRRKFDAFKVPRDLQRCSPFRMCSW 120

Query: 123 LVLEDGFYFSDDEVNWKKDFSW 145
           LV EDGFYFS+DEVNWKKDFSW
Sbjct: 121 LVREDGFYFSNDEVNWKKDFSW 140

BLAST of CmoCh14G019130 vs. TrEMBL
Match: A0A0A0LNI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G153590 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = 1

Query: 22  MSLLPPEQLY--GIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRT 81
           M ++ P++LY  G+ +EVRVINGF NNSSLPLVIWC+SK+ D+GGRALQEHDDFSW V T
Sbjct: 1   MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTT 60

Query: 82  NFWITTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWK 141
             W   ++QFSCT+K D  R+SFDAFKVPRD YRC   +KC+WLV EDGFYFS DE+NWK
Sbjct: 61  KLW--KSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCSWLVTEDGFYFSSDEINWK 120

Query: 142 KDFSW 145
           KDF W
Sbjct: 121 KDFQW 123

BLAST of CmoCh14G019130 vs. TAIR10
Match: AT3G24060.1 (AT3G24060.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 157.1 bits (396), Expect = 7.9e-39
Identity = 74/141 (52.48%), Postives = 98/141 (69.50%), Query Frame = 1

Query: 5   ILVSILMLILFPFFTVFMSLLPPEQLY-GIEYEVRVINGFTNNSSLPLVIWCASKDCDIG 64
           I++ + MLI      +F  +L P+ ++ G E++VRVIN F +NSSLPLVIWC S   D+G
Sbjct: 7   IILLLFMLIAISLTIIFTLMLQPQTMFLGEEFDVRVINSFRDNSSLPLVIWCTSPQGDLG 66

Query: 65  GRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWL 124
           GRALQE DDF W  + + W +  ++++CT+K D  RK F+AFKV RD  RC + +KC+W 
Sbjct: 67  GRALQEGDDFEWTAKIDLW-SWMAEYTCTMKWDSKRKQFEAFKVSRDSNRCGSTKKCSWS 126

Query: 125 VLEDGFYFSDDEVNWKKDFSW 145
           V EDGFYFS DEV W KDFSW
Sbjct: 127 VREDGFYFSSDEVYWTKDFSW 146

BLAST of CmoCh14G019130 vs. NCBI nr
Match: gi|449432460|ref|XP_004134017.1| (PREDICTED: uncharacterized protein LOC101218823 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73
Identity = 136/145 (93.79%), Postives = 141/145 (97.24%), Query Frame = 1

Query: 1   MIMKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDC 60
           MIMKILVSILMLI FPFFTVF+SLLP EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD 
Sbjct: 1   MIMKILVSILMLIFFPFFTVFVSLLPAEQLFGIEYEVRVINGFTNNSSLPLVIWCASKDG 60

Query: 61  DIGGRALQEHDDFSWPVRTNFWI-TTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRK 120
           DIGGRALQEHDDFSWPV+TNFWI TTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRK
Sbjct: 61  DIGGRALQEHDDFSWPVKTNFWITTTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRK 120

Query: 121 CTWLVLEDGFYFSDDEVNWKKDFSW 145
           C+WLV+EDGFYFSDDEVNWKKDFSW
Sbjct: 121 CSWLVMEDGFYFSDDEVNWKKDFSW 145

BLAST of CmoCh14G019130 vs. NCBI nr
Match: gi|700201641|gb|KGN56774.1| (hypothetical protein Csa_3G133250 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.7e-62
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 1

Query: 28  EQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTT- 87
           EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTT 
Sbjct: 82  EQLFGIEYEVRVINGFTNNSSLPLVIWCASKDGDIGGRALQEHDDFSWPVKTNFWITTTT 141

Query: 88  SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW 145
           SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Sbjct: 142 SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCSWLVMEDGFYFSDDEVNWKKDFSW 199

BLAST of CmoCh14G019130 vs. NCBI nr
Match: gi|659075914|ref|XP_008438399.1| (PREDICTED: uncharacterized protein LOC103483510 isoform X2 [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 3.7e-62
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 1

Query: 28  EQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTT- 87
           EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTT 
Sbjct: 37  EQLFGIEYEVRVINGFTNNSSLPLVIWCASKDGDIGGRALQEHDDFSWPVKTNFWITTTT 96

Query: 88  SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW 145
           SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Sbjct: 97  SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCSWLVMEDGFYFSDDEVNWKKDFSW 154

BLAST of CmoCh14G019130 vs. NCBI nr
Match: gi|659075912|ref|XP_008438398.1| (PREDICTED: uncharacterized protein LOC103483510 isoform X1 [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 3.7e-62
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 1

Query: 28  EQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDIGGRALQEHDDFSWPVRTNFWITTT- 87
           EQL+GIEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTT 
Sbjct: 41  EQLFGIEYEVRVINGFTNNSSLPLVIWCASKDGDIGGRALQEHDDFSWPVKTNFWITTTT 100

Query: 88  SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTWLVLEDGFYFSDDEVNWKKDFSW 145
           SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKC+WLV+EDGFYFSDDEVNWKKDFSW
Sbjct: 101 SQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCSWLVMEDGFYFSDDEVNWKKDFSW 158

BLAST of CmoCh14G019130 vs. NCBI nr
Match: gi|596253311|ref|XP_007224750.1| (hypothetical protein PRUPE_ppa024197mg [Prunus persica])

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 1

Query: 3   MKILVSILMLILFPFFTVFMSLLPPEQLYGIEYEVRVINGFTNNSSLPLVIWCASKDCDI 62
           MKIL SIL++     F +FMS+L P+  YGIEY++RVINGFTNNSSLPLVIWCAS+  D+
Sbjct: 1   MKILTSILLICGLASFVIFMSILQPQNFYGIEYDIRVINGFTNNSSLPLVIWCASEHSDL 60

Query: 63  GGRALQEHDDFSWPVRTNFWITTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCTW 122
           GGRALQEHDDFSW +RTNFW  T   F CT+K DRTR+SF+AFK PRD  RC   RKC+W
Sbjct: 61  GGRALQEHDDFSWSLRTNFW-GTNDHFKCTMKWDRTRRSFEAFKAPRDTQRCGPFRKCSW 120

Query: 123 LVLEDGFYFSDDEVNWKKDFSW 145
           LV EDGFYFS+DEVNW+KDFSW
Sbjct: 121 LVREDGFYFSNDEVNWRKDFSW 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6V3_CUCSA2.6e-6294.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133250 PE=4 SV=1[more]
M5XJ42_PRUPE1.3e-5369.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024197mg PE=4 SV=1[more]
B9H006_POPTR2.1e-4864.79Self-incompatibility family protein OS=Populus trichocarpa GN=POPTR_0003s17380g ... [more]
B9GMH5_POPTR1.2e-4662.68Self-incompatibility family protein OS=Populus trichocarpa GN=POPTR_0001s14170g ... [more]
A0A0A0LNI8_CUCSA1.5e-4668.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G153590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G24060.17.9e-3952.48 Plant self-incompatibility protein S1 family[more]
Match NameE-valueIdentityDescription
gi|449432460|ref|XP_004134017.1|7.9e-7393.79PREDICTED: uncharacterized protein LOC101218823 [Cucumis sativus][more]
gi|700201641|gb|KGN56774.1|3.7e-6294.92hypothetical protein Csa_3G133250 [Cucumis sativus][more]
gi|659075914|ref|XP_008438399.1|3.7e-6294.92PREDICTED: uncharacterized protein LOC103483510 isoform X2 [Cucumis melo][more]
gi|659075912|ref|XP_008438398.1|3.7e-6294.92PREDICTED: uncharacterized protein LOC103483510 isoform X1 [Cucumis melo][more]
gi|596253311|ref|XP_007224750.1|1.8e-5369.72hypothetical protein PRUPE_ppa024197mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G019130.1CmoCh14G019130.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 37..144
score: 1.3
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 1..144
score: 4.3
NoneNo IPR availablePANTHERPTHR31232:SF8SUBFAMILY NOT NAMEDcoord: 1..144
score: 4.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh14G019130CmoCh06G012770Cucurbita moschata (Rifu)cmocmoB224
CmoCh14G019130CmoCh08G010080Cucurbita moschata (Rifu)cmocmoB233