CmoCh14G014760 (gene) Cucurbita moschata (Rifu)

NameCmoCh14G014760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitochondrial ribosomal protein L51/S25/CI-B8 family protein
LocationCmo_Chr14 : 11926748 .. 11929588 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTTCACGTTCAGCCACCCCCTCCACTCCATTACCAGCCGCCGCCGCCGCACTCTCAGCTGCCACAGTCTCAGCCTTCCGAGAGTTTCTAATCTCTGTTCCCCAGAAACCCAGTGGTTCGCCGTTGGTGCGATCGCGCCGCCGCCGCTCGTTTTCCAAATTCCCAAGGTTTTATTGTTATTTGTTTCGTTGGATTATGTTGGTTTATTCTGTTCACCTACGGAGAAGGAAAATCAAGAACGAATCATTTATTAAGATTGAAATTATTGCTTTCAATTTTAGAAAAGAAAAAAAAAAAATTGAATTAATGGTGTTGAGTCTTCTTGAATAGAGAAGAAACTATCAATGCGTATGAACTAGCTAGGCATAATATAGATGCCTTTCCTTTTTGCAGAATATAGATGGCTTTCCAAGGTGTATGGCAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATTATCAGGTTTGTTGGATTTCTTATTTCATTACTGAGAATTCACTTTTAACTGATGGAGACCTAAGTTTTAACCTGGAAGTAGTTTGTACCTTCATTTTCCAGCATAATTATCTCAAATTCATACTTATATTAACTAGCAACCTTGTCTACTAACGCATGAATCATCACTATATAGGTTCTGGTAGAGTGCATTTGTCGCACCTTCAATTTGTAGATGATGACACTCTTTTTTTTCTGCTTAGAGAAGGAGAATTCCAATAGGAAACTCAATGGTTTTATGTTCTTCTTTGAAGCTAATTAAGGCCCAAAAATTAACAATGGAGTGAACTGAGAGTCTTCTAAAATTACTTATTGGGTCTGTTTGGTGGGGTGTGAAGCGAGTCAGCTTCTTGGATCTTACTTCGATCTTTCTTTGGGAGATAATCCGAGATCTGTGTGTTTTTGAAACCTGGTGGTGGAGAAACTTCAAAAACAGTCAAGATTAACCTTGATTCAATGTGTTGAGTGTAATTGCAATCTTTTTAGGATGCCCGTCTTGATTAGTCAGAACGTTGAAACGTTAACGAGGAATTTCTTGTGGGTAGGGGTTAGAAGGAGGATGGGGGAGTTCATTGAGAGATGGTCTGCAATTATGTATTGAGACGTTTTTGTTGAAATGGTTGCTATTTTGGAGGTAGTCCTATGATAGTTTTGTTTTTGGAAATTTTGTGGGGCATCTAGCCTGCTTACCTTACAGCACAGCCGAAATATTGCATCTCAGTTTCTTTGGAATTTCTTGATATATAGTTATGTTCGGTTGTTGTTACTATTACCAATATGTAGCTTTTACAGCCGAACATATTTTCCTGAACGATTTGGATGTTATCATTGAATTTGCAGGGCATTTATGGACTCAGAATTGCCAACTTTTAAAGAGAAATCCTCAGCTACAAATAGTTACTGAACTCATAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTTTGGTAGTTATAATTTTCAAAGTACTTTTAACATTGGGTTTTCCCGTATTCCTTCTCTTTTACAGAAAGCAGTAATCATCGGGTGATATGTGTGAAGAACATGGATCCGGAAGACATACATTTACATGCAACCAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATGTAACCAAAAATCCTAGTGCGCAAGGTACTTGGAACACTGATTTAAGATTTTGGGCCCTGCATACATAATTCCTAAAGAGCTTGATTGTCGTTTGGAGGTTGTTTTTTCGATCCATTGCTAGATGTTTAAGCCAAGCTCTATCTTGCTTGAATTTGTAGTTTCTAGTGAGTCCCATGTAACTTTTTCGAGGTTGTTAATGTCCCATGAGCTTCTCTTGAAGAATTACATGAAACAGAACAGGATTCTGATTTGATTTGTTAACTTGTCATGATTCATCAAAGCGATAATGTCCCGAGAATAAATTGTTCCCGTGGACGGGTTGGGACTACCTCGCATTTAAGCTTCTACATAGTTGCGTCTAAGAATATAGAGCCAAACATGATTTCCGTTGATAAACCATGCTATTAACCTAGTTTGGCTCAAAGCATTTCCAAAATACACCTCTAGAACACACATATATATATAAAATCAGAGAGAAATCCAAACGGCTTATTCCTTCATTCAACTCATTAGATAGTATATTCCAACCGGATAACTGCAGCTCAGGACGGTTAAAGCCATACAGGCATGAAGAAAGCTAAGTACTCAACAGACTCTAAGACTTGTATAACATTTAAATTTTTTTTCTCAAAATTTTTGAAGGATTGAACGTACCAAATGTCTCCCTTGGCAGTTAATATTTCATTTGAATCAGATGTTGAATGGCATTTCTGAGAAAGCTAAACCTCAACTCAAATTCTCCAGGAGCAAATGCTAG

mRNA sequence

TTTCTTTCACGTTCAGCCACCCCCTCCACTCCATTACCAGCCGCCGCCGCCGCACTCTCAGCTGCCACAGTCTCAGCCTTCCGAGAGTTTCTAATCTCTGTTCCCCAGAAACCCAGTGGTTCGCCGTTGGTGCGATCGCGCCGCCGCCGCTCGTTTTCCAAATTCCCAAGAATATAGATGGCTTTCCAAGGTGTATGGCAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATTATCAGGGCATTTATGGACTCAGAATTGCCAACTTTTAAAGAGAAATCCTCAGCTACAAATAAAAGCAGTAATCATCGGGTGATATGTGTGAAGAACATGGATCCGGAAGACATACATTTACATGCAACCAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATTTAATATTTCATTTGAATCAGATGTTGAATGGCATTTCTGAGAAAGCTAAACCTCAACTCAAATTCTCCAGGAGCAAATGCTAG

Coding sequence (CDS)

ATGGCTTTCCAAGGTGTATGGCAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATTATCAGGGCATTTATGGACTCAGAATTGCCAACTTTTAAAGAGAAATCCTCAGCTACAAATAAAAGCAGTAATCATCGGGTGATATGTGTGAAGAACATGGATCCGGAAGACATACATTTACATGCAACCAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATTTAATATTTCATTTGAATCAGATGTTGAATGGCATTTCTGAGAAAGCTAAACCTCAACTCAAATTCTCCAGGAGCAAATGCTAG
BLAST of CmoCh14G014760 vs. TrEMBL
Match: A0A0S3R580_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G354200 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 69/107 (64.49%), Postives = 77/107 (71.96%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-------------- 60
           MA +GVWQL KL+VSYC+WGGSSRGI RAFM+S LP FKEK+                  
Sbjct: 1   MALRGVWQLNKLVVSYCNWGGSSRGI-RAFMESHLPAFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ---KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
              K+ N RVICVKNMDPEDIHLHATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  GFYKNKNQRVICVKNMDPEDIHLHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. TrEMBL
Match: V7CEQ8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G238300g PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 69/107 (64.49%), Postives = 77/107 (71.96%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-------------- 60
           MA +GVWQL KL+VSYC+WGGSSRGI RAFM+S LP FKEK+                  
Sbjct: 1   MALRGVWQLDKLVVSYCNWGGSSRGI-RAFMESHLPAFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ---KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
              K+ N RVICVKNMDPEDIHLHATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  GFYKNRNQRVICVKNMDPEDIHLHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. TrEMBL
Match: I1MVQ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G164900 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 71/107 (66.36%), Postives = 78/107 (72.90%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------S 60
           MA +GVWQL KLIVSYC+WGGSSRGI RAFM+S LPTFKEK+                  
Sbjct: 1   MALRGVWQLNKLIVSYCNWGGSSRGI-RAFMESHLPTFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
           A  K+ N RVICVKNMDPEDI LHATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  AYYKNKNQRVICVKNMDPEDILLHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. TrEMBL
Match: A0A0B2SGQ7_GLYSO (60S ribosomal protein L51, mitochondrial OS=Glycine soja GN=glysoja_040956 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 71/107 (66.36%), Postives = 78/107 (72.90%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------S 60
           MA +GVWQL KLIVSYC+WGGSSRGI RAFM+S LPTFKEK+                  
Sbjct: 1   MALRGVWQLNKLIVSYCNWGGSSRGI-RAFMESHLPTFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
           A  K+ N RVICVKNMDPEDI LHATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  AYYKNKNQRVICVKNMDPEDILLHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. TrEMBL
Match: A0A0D2VLX0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G136700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.2e-28
Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-------------- 60
           MA +GVWQLKKLIVSYCDWGGSSRGI RAFM+SELPTFKEK+                  
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGI-RAFMESELPTFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ---KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
              K+ N RV+CVKNM PEDI L+ATRLRNALGRKV+KL+TRH+  H
Sbjct: 61  GFYKNKNERVVCVKNMTPEDILLYATRLRNALGRKVVKLKTRHVTKH 106

BLAST of CmoCh14G014760 vs. TAIR10
Match: AT3G59650.2 (AT3G59650.2 mitochondrial ribosomal protein L51/S25/CI-B8 family protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-13
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1

Query: 1  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS 43
          MA +GVWQLKKL+VSYC+WGGSSRG IRAFM+SELP  KEK+
Sbjct: 1  MALRGVWQLKKLVVSYCNWGGSSRG-IRAFMESELPALKEKN 41

BLAST of CmoCh14G014760 vs. NCBI nr
Match: gi|951003289|ref|XP_014507563.1| (PREDICTED: 54S ribosomal protein L51, mitochondrial-like [Vigna radiata var. radiata])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------S 60
           MA +GVWQL KL+VSYC+WGGSSRGI RAFM+S LP FKEK+                  
Sbjct: 1   MALRGVWQLNKLVVSYCNWGGSSRGI-RAFMESHLPAFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
           A  K+ N RVICVKNMDPEDIH+HATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  AFYKNKNQRVICVKNMDPEDIHMHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. NCBI nr
Match: gi|965659228|dbj|BAT75647.1| (hypothetical protein VIGAN_01354200 [Vigna angularis var. angularis])

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 69/107 (64.49%), Postives = 77/107 (71.96%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-------------- 60
           MA +GVWQL KL+VSYC+WGGSSRGI RAFM+S LP FKEK+                  
Sbjct: 1   MALRGVWQLNKLVVSYCNWGGSSRGI-RAFMESHLPAFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ---KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
              K+ N RVICVKNMDPEDIHLHATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  GFYKNKNQRVICVKNMDPEDIHLHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. NCBI nr
Match: gi|593785647|ref|XP_007155864.1| (hypothetical protein PHAVU_003G238300g [Phaseolus vulgaris])

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28
Identity = 69/107 (64.49%), Postives = 77/107 (71.96%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-------------- 60
           MA +GVWQL KL+VSYC+WGGSSRGI RAFM+S LP FKEK+                  
Sbjct: 1   MALRGVWQLDKLVVSYCNWGGSSRGI-RAFMESHLPAFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ---KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
              K+ N RVICVKNMDPEDIHLHATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  GFYKNRNQRVICVKNMDPEDIHLHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. NCBI nr
Match: gi|356563552|ref|XP_003550025.1| (PREDICTED: 54S ribosomal protein L51, mitochondrial-like [Glycine max])

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28
Identity = 71/107 (66.36%), Postives = 78/107 (72.90%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------S 60
           MA +GVWQL KLIVSYC+WGGSSRGI RAFM+S LPTFKEK+                  
Sbjct: 1   MALRGVWQLNKLIVSYCNWGGSSRGI-RAFMESHLPTFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
           A  K+ N RVICVKNMDPEDI LHATRLRNALGRKV+KLRTRH+  H
Sbjct: 61  AYYKNKNQRVICVKNMDPEDILLHATRLRNALGRKVVKLRTRHVTKH 106

BLAST of CmoCh14G014760 vs. NCBI nr
Match: gi|823245810|ref|XP_012455575.1| (PREDICTED: 54S ribosomal protein L51, mitochondrial-like [Gossypium raimondii])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 1

Query: 1   MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-------------- 60
           MA +GVWQLKKLIVSYCDWGGSSRGI RAFM+SELPTFKEK+                  
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGI-RAFMESELPTFKEKNPQLEVVTELIRGQHPHLK 60

Query: 61  ---KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH 91
              K+ N RV+CVKNM PEDI L+ATRLRNALGRKV+KL+TRH+  H
Sbjct: 61  GFYKNKNERVVCVKNMTPEDILLYATRLRNALGRKVVKLKTRHVTKH 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0S3R580_PHAAN1.1e-2864.49Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G354200 PE=... [more]
V7CEQ8_PHAVU1.9e-2864.49Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G238300g PE=4 SV=1[more]
I1MVQ6_SOYBN1.9e-2866.36Uncharacterized protein OS=Glycine max GN=GLYMA_17G164900 PE=4 SV=1[more]
A0A0B2SGQ7_GLYSO1.9e-2866.3660S ribosomal protein L51, mitochondrial OS=Glycine soja GN=glysoja_040956 PE=4 ... [more]
A0A0D2VLX0_GOSRA7.2e-2864.49Uncharacterized protein OS=Gossypium raimondii GN=B456_011G136700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G59650.21.5e-1378.57 mitochondrial ribosomal protein L51/S25/CI-B8 family protein[more]
Match NameE-valueIdentityDescription
gi|951003289|ref|XP_014507563.1|1.2e-2864.49PREDICTED: 54S ribosomal protein L51, mitochondrial-like [Vigna radiata var. rad... [more]
gi|965659228|dbj|BAT75647.1|1.6e-2864.49hypothetical protein VIGAN_01354200 [Vigna angularis var. angularis][more]
gi|593785647|ref|XP_007155864.1|2.7e-2864.49hypothetical protein PHAVU_003G238300g [Phaseolus vulgaris][more]
gi|356563552|ref|XP_003550025.1|2.7e-2866.36PREDICTED: 54S ribosomal protein L51, mitochondrial-like [Glycine max][more]
gi|823245810|ref|XP_012455575.1|1.0e-2764.49PREDICTED: 54S ribosomal protein L51, mitochondrial-like [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G014760.1CmoCh14G014760.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 8..42
score: 4.
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 8..74
score: 2.9
NoneNo IPR availablePANTHERPTHR2139639S RIBOSOMAL PROTEIN L43coord: 1..88
score: 1.8