Carg15449 (gene) Silver-seed gourd

Overview
NameCarg15449
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description54S ribosomal protein L51, mitochondrial-like
LocationCucurbita_argyrosperma_scaffold_069 : 239639 .. 241924 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCGCTCGAGCCTCCCTCCATCATTTGCTCTCCCGCTCTTTGTCGCTCTTTGGGTCTCTTCGTTGGTAGCCGCACCGATCCTCTGTCTCAGGTATGTCGTTCGTTCTTATTGAAGCTAGAGAGCTTCAGTACTTTGTACAATTCGGATATTACAGCTTCTTCTTAGATTCTCATGAGCTGCTTCTTCCATTGTTGCTCTTTTCGGTGGAGGGTAGTAGAGATCGTCAAATTTTGATATTCGTTTTTCTTCTTAAGCTTCTAGTATCTTTCTTTTTGGATAACCTTATGTTTCCTTATTCATGGATTCTGTAAATCATTTGATGATTATTGATTTATTCGTTTAGATTTGAGCTCTTGGTTGTGTGAGTTAAGTTCGTATTCGTATATTTCTTTTTCATTTCTTCGATTGCTATTTGGGACTTGATTTTTTTAATCCCTTTTGCAGATATAAAGATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGTTTGTTGGATTGCTAAACCATTATCTACTTGATTATTTCATTACTACTCAGATTTCATTTCTTAACTGACGGAGGTTTAAATTTTGACCTCAAAATACTTTGTATTTCCATGTTCCAGCATAATTATTTTATACTCATCTTGCTTTCTTTTAGCTTACTGGTTTGAGTTGGGTAAAAAGTTAAGGAAATTGCTTGGATTTTTTGAAATGGACTGTGCAAAGAAAAGGTGGGTTTTTTAGGGCTAGGGTTCTTGGAGAGTGCAGTAAGACCCTTACTCCTTTCTCCACCCATTTTTTCTTTTACCTAAAGCTGAATTCCTTTATTATTTTTATTTATTATTGTGAGATCCCACGTCGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGAGTGTGGAAACATCTCCCTTGTAGACGCGTTTTAAAAACCTTGAGGGGAAGTCCAGAAGTAAAAGTCCAAGGAGAACAATATTTGCTAGCGGTGGGCTTGAGCTGTTACATTTACCTACCTTAAACCTAGAATATGAGATCATCCTAGTTTTCTAGGAATAAGCTCGATGCTTCTGTAGTTTTATTTGATTGTTGTTATAATTATTATCTAGCTTTTACAGTGAATCAAATACTGTTTCACATGTCCTGAATGATTTGTATCTTATCATTGAACTTTCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAGAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAGTAATTCTCTTTCCCTCTCTCAGCTTCTTGCAGTTATAATTTAATAGTGTTTGAACATGGAATTTCCCATATTTCATTGCCTTCACAGAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGAGGATGCTTCCTAAAGTGCCTGATTTTCTTTCGAGATTGTCTTTTTCCATCAAGATTATGAGATTCCTTAATATGACGTTGTTGAAACAAAACTTCTTTTTAGAGTAGCTTGAGTTTGTAGTTTGTAGTAGTCCAACGTAAACTTTTGAGGCTATTTTGTTCCAATTCTCTGAATACTCTCTCTGGAGAAAGTCTTTCCATGAAACATGCAACAATTGCGAACTTATCTTGAATTGATGAAGCAAAACAGGATTCTGAATTTATTTGTGAACATATTTATAGGTTGTTGTGATGTTAATTAAATGAGATCCAAGAGTAAATGATATGAACTTGGTTCATATCAGTAAATGCAGCAGCTAGTCCTTGTATGGTATTCTTGGTTGGGGTATTGTCCTTTTCTTTGCCATGTTATAATAATGAATGCAAGAGTTGTTGTTTCATTTTAGATTGGTTATGTGGTTTTTTCCAGTCTTAAATGTCGATGAAAGGTTCGACCAAAATGGAGCGAAAACGGGAAGTTGGATGAAAAGAAGTGAAGGAAAGAATTACTAGTAGAAGGGGGAAAAAAAAAACTAGCAAACAATAAAAGAAAAAAGATCCCGTTAGGAATCACGAACTTTCACAATAATATTGTCCACTTTGAGCATAAACTCTCATGACTTTGCTTTTGGTTTGCCCAAAGGGTCTCACGTCAATGGAGAGATTAAAGTTCGGCC

mRNA sequence

AATCGCTCGAGCCTCCCTCCATCATTTGCTCTCCCGCTCTTTGTCGCTCTTTGGGTCTCTTCGTTGGTAGCCGCACCGATCCTCTGTCTCAGATATAAAGATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAGAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGAGGATGCTTCCTAAAGTGCCTGATTTTCTTTCGAGATTGTCTTTTTCCATCAAGATTATGAGATTCCTTAATATGACGTTGTTGAAACAAAACTTCTTTTTAGAGTAGCTTGAGTTTGTAGTTTGTAGTAGTCCAACGTAAACTTTTGAGGCTATTTTGTTCCAATTCTCTGAATACTCTCTCTGGAGAAAGTCTTTCCATGAAACATGCAACAATTGCGAACTTATCTTGAATTGATGAAGCAAAACAGGATTCTGAATTTATTTGTGAACATATTTATAGGTTGTTGTGATGTTAATTAAATGAGATCCAAGAGTAAATGATATGAACTTGGTTCATATCAGTAAATGCAGCAGCTAGTCCTTGTATGGTATTCTTGGTTGGGGTATTGTCCTTTTCTTTGCCATGTTATAATAATGAATGCAAGAGTTGTTGTTTCATTTTAGATTGGTTATGTGGTTTTTTCCAGTCTTAAATGTCGATGAAAGGTTCGACCAAAATGGAGCGAAAACGGGAAGTTGGATGAAAAGAAGTGAAGGAAAGAATTACTAGTAGAAGGGGGAAAAAAAAAACTAGCAAACAATAAAAGAAAAAAGATCCCGTTAGGAATCACGAACTTTCACAATAATATTGTCCACTTTGAGCATAAACTCTCATGACTTTGCTTTTGGTTTGCCCAAAGGGTCTCACGTCAATGGAGAGATTAAAGTTCGGCC

Coding sequence (CDS)

ATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAGAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGA

Protein sequence

MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Homology
[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_022932626.1 (54S ribosomal protein L51, mitochondrial [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 1.6e-62
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_022972093.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 246.5 bits (628), Expect = 4.5e-62
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_023538941.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 2.2e-61
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDW GSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWSGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_022158383.1 (54S ribosomal protein L51, mitochondrial [Momordica charantia])

HSP 1 Score: 230.7 bits (587), Expect = 2.6e-57
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLP FK+KNPQLEVV ELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNN+RVVCV+NLD EEI+LHA RLRNALGRKVIKL+TRHVTKNPSVQGTW TDVRF
Sbjct: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_022979453.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 2.0e-54
Identity = 99/119 (83.19%), Postives = 112/119 (94.12%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFMDS+LP F++KNPQL++V ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYK+NN RV+CV+N+D E+IHLHATRLRNALGRKV+KL+TRHVTKNPS QGTW TDVRF
Sbjct: 61  FYKSNNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]
BLAST of Carg15449 vs. TAIR10
Match: AT3G59650.2 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein)

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-46
Identity = 89/146 (60.96%), Postives = 107/146 (73.29%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYC+WGGSSRGIRAFM+S+LP  K+KNPQLEV+ EL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYK---------------------------NNNQRVVCVRNLDAEEIHLHATRLRNALGR 120
            Y                            N N+RVVCV+N+D EE+ L+ATRLRN+LGR
Sbjct: 61  IYSMYISPLLNTILIQRLLILAISLAQFIGNRNERVVCVKNMDPEEVLLNATRLRNSLGR 120

[Close]
BLAST of Carg15449 vs. Swiss-Prot
Match: sp|Q9UUC8|RM51_SCHPO (54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl51 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 34/104 (32.69%), Postives = 61/104 (58.65%), Query Frame = 0 

Query: 10  QKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYKNNNQRV 69
           +++  SYC+WGGSS+G++ F+ ++L    K++  +E      +G+HP ++A+Y    ++V
Sbjct: 24  RRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKV 83

Query: 70  VCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           +C R + A  I   A   R++ G K   +K    + NPSV+G W
Sbjct: 84  ICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRGIW 127

[Close]
BLAST of Carg15449 vs. Swiss-Prot
Match: sp|Q758S3|RM51_ASHGO (54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-12
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 0 

Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPDFKKKNPQLEVVRELIRGQHPHLKAFYKN 65
           ++  +K+ + YC+WGGSS+G+R F+ S +L  + +K PQ++    + +  HP LKA Y N
Sbjct: 20  IFPCKKITLQYCNWGGSSQGLRDFLTSKRLAKWAEKYPQIQ-FEVVAKAGHPVLKAEYIN 79

Query: 66  NNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTK-------NPSVQGTW 114
              + +CVRNL+ + + L    LR + G ++     RH  K       N SV+G W
Sbjct: 80  GLNKAICVRNLNVDHVELKLKLLRESSGAQL-----RHYPKNANVLSLNQSVRGVW 129

[Close]
BLAST of Carg15449 vs. Swiss-Prot
Match: sp|Q06090|RM51_YEAST (54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL51 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 38/114 (33.33%), Postives = 70/114 (61.40%), Query Frame = 0 

Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPDFKKKNP--QLEVVRELIRGQHPHLKAFY 65
           V+  +K+ + +C+WGGSS G+R F+ S +L  + ++ P  Q EV+R   +  HP L+A Y
Sbjct: 20  VFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEVMR---KSGHPLLRAEY 79

Query: 66  KNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRH---VTKNPSVQGTW 114
            N  ++V+CVRNL+ + +      L+++ G  +++ +T++    + N SV+G W
Sbjct: 80  TNGREKVICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIW 129

[Close]
BLAST of Carg15449 vs. Swiss-Prot
Match: sp|Q99N89|RM43_MOUSE (39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 0 

Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYK 63
           R V QLQ+L +S      SSRG R F++ ++ DF ++NP + V         P + A Y 
Sbjct: 21  RYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAEYL 80

Query: 64  NNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           N   R   V +   EEI     +L +  G  VI+++    T NPS+QG W
Sbjct: 81  NGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

[Close]
BLAST of Carg15449 vs. Swiss-Prot
Match: sp|Q8N983|RM43_HUMAN (39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 37/110 (33.64%), Postives = 54/110 (49.09%), Query Frame = 0 

Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYK 63
           R V QLQ+L  S    G SSRG R F++ ++ DF ++NP + +         P + A Y 
Sbjct: 21  RYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYL 80

Query: 64  NNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           N   R   +     EEI     +L +  G  VI+++    T NPS+QG W
Sbjct: 81  NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

[Close]
BLAST of Carg15449 vs. TrEMBL
Match: tr|A0A061EJZ0|A0A061EJZ0_THECC (Mitochondrial ribosomal protein L51/S25/CI-B8 family protein OS=Theobroma cacao OX=3641 GN=TCM_019878 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 100/119 (84.03%), Postives = 111/119 (93.28%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFM+SQLP FK+KNPQLEVV ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMESQLPTFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKN N+RV+CV+N+  E+I LHA+RLRNALGRKV+KLKTRHVTK+PSVQGTW TDV+F
Sbjct: 61  FYKNKNERVICVKNMTPEDILLHASRLRNALGRKVVKLKTRHVTKHPSVQGTWTTDVKF 119

[Close]
BLAST of Carg15449 vs. TrEMBL
Match: tr|A0A1U8IMF4|A0A1U8IMF4_GOSHI (54S ribosomal protein L51, mitochondrial-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107896795 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 99/119 (83.19%), Postives = 111/119 (93.28%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFM+S+LP FK+KNPQLEVV ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMESELPTFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKN N+RVVCV+N+  E+I L+ATRLRNALGRKV+KLKTRHVTK+PSVQGTW TDV+F
Sbjct: 61  FYKNKNERVVCVKNMTPEDILLYATRLRNALGRKVVKLKTRHVTKHPSVQGTWTTDVKF 119

[Close]
BLAST of Carg15449 vs. TrEMBL
Match: tr|A0A1U8K992|A0A1U8K992_GOSHI (54S ribosomal protein L51, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107914614 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 99/119 (83.19%), Postives = 111/119 (93.28%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFM+S+LP FK+KNPQLEVV ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMESELPTFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKN N+RVVCV+N+  E+I L+ATRLRNALGRKV+KLKTRHVTK+PSVQGTW TDV+F
Sbjct: 61  FYKNKNERVVCVKNMTPEDILLYATRLRNALGRKVVKLKTRHVTKHPSVQGTWATDVKF 119

[Close]
BLAST of Carg15449 vs. TrEMBL
Match: tr|A0A0D2VLX0|A0A0D2VLX0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G136700 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 99/119 (83.19%), Postives = 111/119 (93.28%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFM+S+LP FK+KNPQLEVV ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMESELPTFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKN N+RVVCV+N+  E+I L+ATRLRNALGRKV+KLKTRHVTK+PSVQGTW TDV+F
Sbjct: 61  FYKNKNERVVCVKNMTPEDILLYATRLRNALGRKVVKLKTRHVTKHPSVQGTWTTDVKF 119

[Close]
BLAST of Carg15449 vs. TrEMBL
Match: tr|A0A0D2USP7|A0A0D2USP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G136700 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 99/119 (83.19%), Postives = 111/119 (93.28%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFM+S+LP FK+KNPQLEVV ELIRGQHPHLK 
Sbjct: 32  MALRGVWQLKKLIVSYCDWGGSSRGIRAFMESELPTFKEKNPQLEVVTELIRGQHPHLKG 91

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKN N+RVVCV+N+  E+I L+ATRLRNALGRKV+KLKTRHVTK+PSVQGTW TDV+F
Sbjct: 92  FYKNKNERVVCVKNMTPEDILLYATRLRNALGRKVVKLKTRHVTKHPSVQGTWTTDVKF 150

The following BLAST results are available for this feature:
BLAST of Carg15449 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932626.11.6e-6299.1654S ribosomal protein L51, mitochondrial [Cucurbita moschata][more]
XP_022972093.14.5e-6298.3254S ribosomal protein L51, mitochondrial-like [Cucurbita maxima][more]
XP_023538941.12.2e-6197.4854S ribosomal protein L51, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
XP_022158383.12.6e-5791.6054S ribosomal protein L51, mitochondrial [Momordica charantia][more]
XP_022979453.12.0e-5483.1954S ribosomal protein L51, mitochondrial-like [Cucurbita maxima][more]
BLAST of Carg15449 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G59650.21.5e-4660.96mitochondrial ribosomal protein L51/S25/CI-B8 family protein[more]
BLAST of Carg15449 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9UUC8|RM51_SCHPO2.0e-1332.6954S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
sp|Q758S3|RM51_ASHGO3.8e-1234.4854S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /... [more]
sp|Q06090|RM51_YEAST1.6e-1033.3354S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
sp|Q99N89|RM43_MOUSE1.5e-0834.5539S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1... [more]
sp|Q8N983|RM43_HUMAN2.6e-0833.6439S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 ... [more]
BLAST of Carg15449 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A061EJZ0|A0A061EJZ0_THECC2.5e-5384.03Mitochondrial ribosomal protein L51/S25/CI-B8 family protein OS=Theobroma cacao ... [more]
tr|A0A1U8IMF4|A0A1U8IMF4_GOSHI2.1e-5283.1954S ribosomal protein L51, mitochondrial-like isoform X2 OS=Gossypium hirsutum O... [more]
tr|A0A1U8K992|A0A1U8K992_GOSHI2.1e-5283.1954S ribosomal protein L51, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=L... [more]
tr|A0A0D2VLX0|A0A0D2VLX0_GOSRA2.1e-5283.19Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G136700 PE=4 ... [more]
tr|A0A0D2USP7|A0A0D2USP7_GOSRA2.1e-5283.19Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G136700 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR007741Ribosome/NADH_DH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15449-RACarg15449-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007741Ribosomal protein/NADH dehydrogenase domainSMARTSM00916L51_S25_CI_B8_2coord: 18..91
e-value: 2.1E-18
score: 77.1
IPR007741Ribosomal protein/NADH dehydrogenase domainPFAMPF05047L51_S25_CI-B8coord: 26..76
e-value: 2.2E-10
score: 40.2
NoneNo IPR availableGENE3DG3DSA:3.40.30.10coord: 2..118
e-value: 4.1E-37
score: 129.2
NoneNo IPR availablePANTHERPTHR2139639S RIBOSOMAL PROTEIN L43coord: 1..118
IPR036249Thioredoxin-like superfamilySUPERFAMILYSSF52833Thioredoxin-likecoord: 8..90

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15449Cla010888Watermelon (97103) v1carwmB0690
Carg15449Csa4G011700Cucumber (Chinese Long) v2carcuB0716
Carg15449MELO3C017759Melon (DHL92) v3.5.1carmeB0694
Carg15449ClCG07G015230Watermelon (Charleston Gray)carwcgB0670
Carg15449CSPI04G02870Wild cucumber (PI 183967)carcpiB0730
Carg15449Cucsa.095260Cucumber (Gy14) v1carcgyB0775
Carg15449CmaCh06G016820Cucurbita maxima (Rimu)carcmaB0974
Carg15449CmaCh14G014400Cucurbita maxima (Rimu)carcmaB0972
Carg15449CmoCh06G016740Cucurbita moschata (Rifu)carcmoB0947
Carg15449CmoCh14G014760Cucurbita moschata (Rifu)carcmoB0946
Carg15449Lsi07G003370Bottle gourd (USVL1VR-Ls)carlsiB635
Carg15449Cp4.1LG03g13040Cucurbita pepo (Zucchini)carcpeB0973
Carg15449Cp4.1LG08g06020Cucurbita pepo (Zucchini)carcpeB0974
Carg15449CsGy4G002740Cucumber (Gy14) v2carcgybB0693
Carg15449MELO3C017759.2Melon (DHL92) v3.6.1carmedB0707
Carg15449CsaV3_4G002820Cucumber (Chinese Long) v3carcucB0733
Carg15449Cla97C07G142210Watermelon (97103) v2carwmbB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15449Carg06590Silver-seed gourdcarcarB142
The following block(s) are covering this gene:
GeneOrganismBlock
Carg15449Silver-seed gourdcarcarB013
Carg15449Cucumber (Gy14) v1carcgyB0778
Carg15449Cucurbita maxima (Rimu)carcmaB0973
Carg15449Wild cucumber (PI 183967)carcpiB0731
Carg15449Cucumber (Chinese Long) v3carcucB0734
Carg15449Bottle gourd (USVL1VR-Ls)carlsiB631
Carg15449Melon (DHL92) v3.5.1carmeB0691
Carg15449Melon (DHL92) v3.6.1carmedB0704
Carg15449Watermelon (Charleston Gray)carwcgB0669
Carg15449Watermelon (97103) v1carwmB0693
Carg15449Watermelon (97103) v2carwmbB0721
Carg15449Wax gourdcarwgoB0813