CmoCh14G009280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G009280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NADH dehydrogenase (Ubiquinone) Fe-S protein 5
Location	Cmo_Chr14 : 4917853 .. 4921570 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCATTTTTGCCACTGTTACCCCGGAAACCCGAACCAGACTCCGATTACATTTTAGTAACTTCCACTCGGCCTCAGCGGCTGCAGCCACACTAAACGTAGCTCACAAATCAGAGATTCCGATTCAGCGGTGACCTCGAAAGGTTCAGACGATGGCGTCAGGGTGGGGAATAACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGATTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTACTCTACTCCGTGAAGATTATCTCGAGTGCCTCCACCATTCCAAGGAGGTCAGACCTTCCATTTCCCCTTGCTTTCTTGCATCTATTTCAATTTTCTTCCTATTTCTTATGTATAAGTTAGATTGATTGCCTGAATTGGGATTAGATATGTGGTTCCTTGTTCATTAGAGCTTTTGATGCCTAATTTGATCTCGGCTCATGTTTTCAACGTCGCATCCGAAGTCGGTTGCGTGAGATTTGGATTAGGTCTGTTTATATATGCAACTTGTTGATTGACAAAATTTCTGGAGAAATTTGAATTTATGAATACTTGGAATTTTGTGGCTTTTGATGATAGTGATTGATTAGGGAAAGGTCATGTCATGTCGAAGAAGAAATAAGGTTTTGTGGCTTCTGTTTCCAGTTCCACATAGTTTTTCCATATTTTGATGAACTTTTTAGATTTCTTATCAACAAGAAAGAATGTTTTAGAGAAGCATGGTGGAGACCTCAGTCTCAACCTATTACATATTGAGTTTTGTGTATAATGAGGGAGAGGGACAGGTCAACTTTATTGTTTCAAGCGAGCAGCTTGCCATACATAGCTTGTGATATAATATGTTTAGGCAAATCCAAGCATAGTTCAATGTATAAGATACCAATTAACATCCCAAAGATAGTTTGATCCCCCACTTTTAATGGTTTGAACTAAAAAAAGAAAAGTTATATTTTGTTTAGGTGTTTCTGCTGAAACACAATTGTGTGATTTTATGTTTCTGAACATTCATCTTCCCTATGAAGATATGGATCTATATACACTTACTCTAACAACATTGAGTTTTGCCTTCTAAGTTTAATGTGAAGAGTTTGTTTTATTCTAAAAATAAATAAATAAATAAAATAAAAACGGAAGTGGGATATGTTTATGGTAAGCTGAATATATAGATGCTTGATCGTTAAAAGTAAGCTTCTATGCTGTAGGAGTCAACGGGCATTCTTTCTATGAGCATTTTAATAAGTAAACTGGTAGTCTCAACATATCAAGCTTTGCAACTACAGTGTTTCAATATTATCATCTTGGTGATGAAATCCTCCTCCCGAATCTCATTTTCATAAGTTGTTCTCTGATGCTCTGCCGATTTTCAACGGTTGATTTTTAGCTATTGGGGGCATTTGGATCTCTTTCCACGTCCTAAATTTCCATTTTCTTTTGTTATATCTTTGATAGATCCTTTCTTTCAATGTTCACGTTGTCACCATCAGCTTTGCATATGTGAAAATCTAAATAAACCTCAGCTAAATTTGTTAGTTTTTATGGGTCTAAATATGTGCAAATCTCTAATATTTGATTGTTTCTTCAATTCAATCTATTATGTTTTTTTCAGTTATGTCCTTTACATCGGTAAATGTTAGAATTGACTTATGATAAGTTTAGATTGTATGATATTTGGTGAGTTGACAAAAATTTAAATTTAGAAAAGGAATTACGGCATTTAAGTAAGGAAATTTTCTAACTTGACCTCCATATTTTTAAGAAGTTGGTAAAAATTTTGACATTTGCATAGTTTCCATTTTAAATTTTTGCCAACTCTCTAAATATCATATCATGAAAACTTATCATCAGTAAATTTTAACATTTATGGATGAGAATGATATAATTGAAAAATATTAAATCAAAAGGAACTAAGTTGAGACTAAATTATTGAAAAATGCATAAACACTAGGGTAGTTGTTTAAATTTGTCTTCGTTGTTATTTCTAAATGATTACGCCCTATGCATGTGACTTCTGGAAAGCACATGCAACTATGGATTGTTTTGGTTTACAAGAATAGCATTCAACTTGCCGTCTCTTGTTGGTAATGACACGCCCTATTAATTTGGCACCGATCATTTGAATTTGAGAACTCCCGTTGCTTAATATCTCCGTGTTTGGTATCAACCCCTTGACTAGTTTACACCTGTTTTTTCCTTTATTCTTTTTCCTTCTCCAGTAGCTTCTCTCTCGATTGTACTTTAATTTATCTTGACGATAGGTGGATTCTGCTAAAATTGACTTTATTTTTATATCCAAACCCACCAAGTAACAAAAATCACAGTGCTAGGTTTTTGTAGGAATATGGTTAACTTTTTTTCACCATACAATCAGATGATCTTTTCTGATTTTTCCTGGGATATGTTTCTCACTTGAGTCAGAAATGAATCTCAATCCAATTACTATTTTTGGTGCCACCTTATATTGTAATGTTTTAATCGTTCCTTGTGTGCGTGTCTTTGAGTGGTGTGGTCTCTGCTTTGCTATTGCTATCACGTCATACAGATAAGTTTGTTATATCACTTGTACGTTCAGTTTGATTGCTCATGTGGAAAAGGGTAGACAGGTGGATTTTTTTTTAATTTAATTAATTTATTTTATTTTTTGCATTCTAAAACCATCATAGGTTGGTTCACTAGTCCCAAGTGCAAGCGGTTATCTTAAATGCATTTGAGGTCTCAATCATGGTTCAAAACTTAAATTATAGCCGCCGTCTACCTAACATTCTAGAAATATTTATCTAGTATCCTGACACAACATAGTACTTGCGATTATTCCATAGAATTAGTCATGCACCACGTCTTTAAAGAAACAAAAATTAAGACTACTGCTGTTTAGAGTGAGTGGAGCTGGTATTTGATTCTTTCAACTACTAATTTGACCTTGACACATAAATTGGTTAGATTATGTTTGTTGTGTTATTCTTGCTGTTGTATTTATTAACATATAAATTAGTTAAATGAATTTGTGGAACAAGATAAAAGCAGTTAAACATGTTTTGATGGTGACTTGAATTCTAATATTTACTAATTGAGTGAGGTATTCAATCATGATGATTCTAGAGGGTATGTTTAAAATCATAGTTTATAGAAATCGAACTTCTAAGCTTATGTACATTTCTTTTGCATCATTTCTTTTTGCAAAATCGTTATATCATTCACTTAAGACAACTCTTCCATTTTTGAATAATGAGGTATATATCTGGACATGGAGCTCAGATTTCTAAGTTGTACCTATCATATTTGTTATTTATCTCTCTACTCAATATGAATATATTAGTGAGTTGATTTATGGAAGGCTCTTAAGAATTACTTTTTTAGGCTTGATAAGAGAATGGTTTCATTGTTAACGAATAGGAACACATGGATAAAAAATGATTCTGCCCGCTTTGCAAGAATCCGTTCTAATTCCATTTGTTTGTTTGGGCCATACCTTACAGTTCCAAAGAAGAAACCGTGTCTACAAGGAGGAGAAGCGTAAGCTAAGAGCAGCCGAACGGGAGGCCAAAGAGGGTAAACAAGTTGAAGCTGCTCATGCATAGTCATAATCATCGTTCTTCAAAGATTGAATAATGAAGAATGCATGGACATGCGTTGTTATTTGAACAATTTTTGACTTGTTAATGACATTCTTTTCTGTCTTTCCTGAATCCGGTATGAAATTCACAAGCCA

mRNA sequence

ATTCCATTTTTGCCACTGTTACCCCGGAAACCCGAACCAGACTCCGATTACATTTTAGTAACTTCCACTCGGCCTCAGCGGCTGCAGCCACACTAAACGTAGCTCACAAATCAGAGATTCCGATTCAGCGGTGACCTCGAAAGGTTCAGACGATGGCGTCAGGGTGGGGAATAACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGATTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTACTCTACTCCGTGAAGATTATCTCGAGTGCCTCCACCATTCCAAGGAGTTCCAAAGAAGAAACCGTGTCTACAAGGAGGAGAAGCGTAAGCTAAGAGCAGCCGAACGGGAGGCCAAAGAGGGTAAACAAGTTGAAGCTGCTCATGCATAGTCATAATCATCGTTCTTCAAAGATTGAATAATGAAGAATGCATGGACATGCGTTGTTATTTGAACAATTTTTGACTTGTTAATGACATTCTTTTCTGTCTTTCCTGAATCCGGTATGAAATTCACAAGCCA

Coding sequence (CDS)

ATGGCGTCAGGGTGGGGAATAACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGATTTCAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTACTCTACTCCGTGAAGATTATCTCGAGTGCCTCCACCATTCCAAGGAGTTCCAAAGAAGAAACCGTGTCTACAAGGAGGAGAAGCGTAAGCTAAGAGCAGCCGAACGGGAGGCCAAAGAGGGTAAACAAGTTGAAGCTGCTCATGCATAG

Homology

[Close]

BLAST of CmoCh14G009280 vs. Swiss-Prot
Match: NDS5A_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana GN=At2g47690 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.4e-34
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1   MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
           MASGWGITGNKGRCYDFW+DFS+CMS CREPKDCTLLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 61  EKRKLRAAEREAKE 75
           E+RKLRAA R+ +E
Sbjct: 96  EQRKLRAASRKGEE 109

[Close]

BLAST of CmoCh14G009280 vs. Swiss-Prot
Match: NDS5B_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana GN=At3g62790 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.4e-34
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDCTLLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKE 75
          E+RKLRAA R+ +E
Sbjct: 61 EQRKLRAASRKGEE 74

[Close]

BLAST of CmoCh14G009280 vs. TrEMBL
Match: A0A0A0KTA7_CUCSA (Fiber protein Fb14 OS=Cucumis sativus GN=Csa_4G001750 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.6e-38
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH KEFQRRNRVYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHFKEFQRRNRVYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAAEREAKEGK V+AAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of CmoCh14G009280 vs. TrEMBL
Match: A0A067JZD5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13929 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-33
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAA+R+A+ G  V   HA
Sbjct: 61 EQRKLRAAKRKAEGGDNVVNHHA 83

[Close]

BLAST of CmoCh14G009280 vs. TrEMBL
Match: Q4TZT1_GOSHI (Fb14 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.1e-33
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI GNKGRCYDFW+DFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGINGNKGRCYDFWVDFSECMSRCREPKDCGLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAA R+ KEG+ V   HA
Sbjct: 61 EQRKLRAAARKDKEGENVVHHHA 83

[Close]

BLAST of CmoCh14G009280 vs. TrEMBL
Match: Q7X9S6_GOSBA (Fiber protein Fb14 OS=Gossypium barbadense PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.1e-33
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI GNKGRCYDFW+DFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGINGNKGRCYDFWVDFSECMSRCREPKDCGLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAA R+ KEG+ V   HA
Sbjct: 61 EQRKLRAAARKDKEGENVVHHHA 83

[Close]

BLAST of CmoCh14G009280 vs. TrEMBL
Match: A0A061DQI1_THECC (NADH-ubiquinone oxidoreductase-related OS=Theobroma cacao GN=TCM_004651 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.3e-33
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI GNKGRCYDFW+DFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGINGNKGRCYDFWVDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAA R+ KEG+     HA
Sbjct: 61 EQRKLRAATRKGKEGEDGVGHHA 83

[Close]

BLAST of CmoCh14G009280 vs. TAIR10
Match: AT2G47690.1 (AT2G47690.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-35
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1   MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
           MASGWGITGNKGRCYDFW+DFS+CMS CREPKDCTLLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 61  EKRKLRAAEREAKE 75
           E+RKLRAA R+ +E
Sbjct: 96  EQRKLRAASRKGEE 109

[Close]

BLAST of CmoCh14G009280 vs. TAIR10
Match: AT3G62790.1 (AT3G62790.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-35
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDCTLLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKE 75
          E+RKLRAA R+ +E
Sbjct: 61 EQRKLRAASRKGEE 74

[Close]

BLAST of CmoCh14G009280 vs. NCBI nr
Match: gi|778689295|ref|XP_011652934.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 164.5 bits (415), Expect = 8.1e-38
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH KEFQRRNRVYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHFKEFQRRNRVYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAAEREAKEGK V+AAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of CmoCh14G009280 vs. NCBI nr
Match: gi|659108705|ref|XP_008454345.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-36
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI G+KGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH+KEFQRRNR+YKE
Sbjct: 1  MASGWGIDGSKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHTKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAAEREAKEGK V+ AHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDTAHA 83

[Close]

BLAST of CmoCh14G009280 vs. NCBI nr
Match: gi|1009148330|ref|XP_015891880.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 151.0 bits (380), Expect = 9.3e-34
Identity = 69/79 (87.34%), Postives = 76/79 (96.20%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFS+CMSRCREPKDC+LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSECMSRCREPKDCSLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVE 80
          E+RKLRAA R+ KEG+ V+
Sbjct: 61 EQRKLRAAARKGKEGEDVD 79

[Close]

BLAST of CmoCh14G009280 vs. NCBI nr
Match: gi|802688815|ref|XP_012082763.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGITGNKGRCYDFWIDFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAA+R+A+ G  V   HA
Sbjct: 61 EQRKLRAAKRKAEGGDNVVNHHA 83

[Close]

BLAST of CmoCh14G009280 vs. NCBI nr
Match: gi|30841446|gb|AAP34361.1| (fiber protein Fb14 [Gossypium barbadense])

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-32
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60
          MASGWGI GNKGRCYDFW+DFS+CMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGINGNKGRCYDFWVDFSECMSRCREPKDCGLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EKRKLRAAEREAKEGKQVEAAHA 84
          E+RKLRAA R+ KEG+ V   HA
Sbjct: 61 EQRKLRAAARKDKEGENVVHHHA 83

The following BLAST results are available for this feature:

BLAST of CmoCh14G009280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDS5A_ARATH	5.4e-34	87.84	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana ...	[more]
NDS5B_ARATH	5.4e-34	87.84	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana ...	[more]

BLAST of CmoCh14G009280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTA7_CUCSA	5.6e-38	93.98	Fiber protein Fb14 OS=Cucumis sativus GN=Csa_4G001750 PE=4 SV=1	[more]
A0A067JZD5_JATCU	3.2e-33	84.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13929 PE=4 SV=1	[more]
Q4TZT1_GOSHI	7.1e-33	83.13	Fb14 OS=Gossypium hirsutum PE=2 SV=1	[more]
Q7X9S6_GOSBA	7.1e-33	83.13	Fiber protein Fb14 OS=Gossypium barbadense PE=2 SV=1	[more]
A0A061DQI1_THECC	9.3e-33	81.93	NADH-ubiquinone oxidoreductase-related OS=Theobroma cacao GN=TCM_004651 PE=4 SV=...	[more]

BLAST of CmoCh14G009280 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47690.1	3.1e-35	87.84	NADH-ubiquinone oxidoreductase-related	[more]
AT3G62790.1	3.1e-35	87.84	NADH-ubiquinone oxidoreductase-related	[more]

BLAST of CmoCh14G009280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689295\|ref\|XP_011652934.1\|	8.1e-38	93.98	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|659108705\|ref\|XP_008454345.1\|	2.6e-36	89.16	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1009148330\|ref\|XP_015891880.1\|	9.3e-34	87.34	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|802688815\|ref\|XP_012082763.1\|	4.6e-33	84.34	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|30841446\|gb\|AAP34361.1\|	1.0e-32	83.13	fiber protein Fb14 [Gossypium barbadense]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019342	NADH_UbQ_OxRdtase_FeS-su5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0009853	photorespiration
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G009280.1	CmoCh14G009280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019342	NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5	PFAM	PF10200	Ndufs5	coord: 12..64 score: 4.
None	No IPR available	unknown	Coil	Coil	coord: 48..78 scor
None	No IPR available	PANTHER	PTHR15224	FAMILY NOT NAMED	coord: 1..75 score: 7.8
None	No IPR available	PANTHER	PTHR15224:SF1	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5	coord: 1..75 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G009280	Cucsa.097150	Cucumber (Gy14) v1	cgycmoB0187
CmoCh14G009280	CmaCh14G008990	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G009280	CmaCh01G003140	Cucurbita maxima (Rimu)	cmacmoB462
CmoCh14G009280	Cla017414	Watermelon (97103) v1	cmowmB213
CmoCh14G009280	Csa4G001750	Cucumber (Chinese Long) v2	cmocuB246
CmoCh14G009280	MELO3C017960	Melon (DHL92) v3.5.1	cmomeB233
CmoCh14G009280	ClCG10G010880	Watermelon (Charleston Gray)	cmowcgB206
CmoCh14G009280	CSPI04G00800	Wild cucumber (PI 183967)	cmocpiB251
CmoCh14G009280	Lsi03G010700	Bottle gourd (USVL1VR-Ls)	cmolsiB228
CmoCh14G009280	Cp4.1LG02g16280	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G009280	Cp4.1LG03g05300	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G009280	MELO3C017960.2	Melon (DHL92) v3.6.1	cmomedB265
CmoCh14G009280	CsaV3_4G000760	Cucumber (Chinese Long) v3	cmocucB0292
CmoCh14G009280	Cla97C10G193790	Watermelon (97103) v2	cmowmbB229
CmoCh14G009280	Bhi11G001003	Wax gourd	cmowgoB0279
CmoCh14G009280	CsGy4G000700	Cucumber (Gy14) v2	cgybcmoB456
CmoCh14G009280	Carg11131	Silver-seed gourd	carcmoB1102
CmoCh14G009280	Carg07406	Silver-seed gourd	carcmoB1031

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G009280	CmoCh01G003280	Cucurbita moschata (Rifu)	cmocmoB203

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G009280	Cucurbita pepo (Zucchini)	cmocpeB224
CmoCh14G009280	Cucurbita pepo (Zucchini)	cmocpeB232
CmoCh14G009280	Silver-seed gourd	carcmoB0095
CmoCh14G009280	Silver-seed gourd	carcmoB0151
CmoCh14G009280	Watermelon (97103) v2	cmowmbB250
CmoCh14G009280	Cucurbita moschata (Rifu)	cmocmoB196
CmoCh14G009280	Cucurbita moschata (Rifu)	cmocmoB199
CmoCh14G009280	Cucurbita moschata (Rifu)	cmocmoB232
CmoCh14G009280	Cucumber (Gy14) v1	cgycmoB0607
CmoCh14G009280	Cucurbita maxima (Rimu)	cmacmoB351